Works by Seungyeul Yoo

Results: 17

A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis.

Published in:

2017

By:

Seungyeul Yoo;
Wenhui Wang;
Qin Wang;
Fiel, M. Isabel;
Lee, Eunjee;
Hiotis, Spiros P.;
Jun Zhu;
Yoo, Seungyeul;
Wang, Wenhui;
Wang, Qin;
Zhu, Jun

Publication type:

journal article

SiteComp: a server for ligand binding site analysis in protein structures.

Published in:

Bioinformatics, 2012, v. 28, n. 8, p. 1172, doi. 10.1093/bioinformatics/bts095

By:

Lin, Yingjie;
Yoo, Seungyeul;
Sanchez, Roberto

Publication type:

Article

Transcriptional regulatory network analysis identifies GRN as a key regulator bridging chemotherapy and immunotherapy response in small cell lung cancer.

Published in:

Journal of Hematology & Oncology, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13045-025-01667-5

By:

Yoo, Seungyeul;
Patel, Ayushi S.;
Karam, Sarah;
Zhong, Yi;
Wang, Li;
Jiang, Feng;
Kong, Ranran;
Bikvan, Sharon;
Wang, Wenhui;
Sinha, Abhilasha;
Powell, Charles A.;
Zhu, Jun;
Watanabe, Hideo

Publication type:

Article

Global DNA methylation of WTC prostate cancer tissues show signature differences compared to non-exposed cases.

Published in:

Carcinogenesis, 2022, v. 43, n. 6, p. 528, doi. 10.1093/carcin/bgac025

By:

Yu, Haocheng;
Tuminello, Stephanie;
Alpert, Naomi;
Gerwen, Maaike van;
Yoo, Seungyeul;
Mulholland, David J;
Aaronson, Stuart A;
Donovan, Michael;
Oh, William K;
Gong, Yixuan;
Wang, Li;
Zhu, Jun;
Taioli, Emanuela

Publication type:

Article

Integrative network analysis of early-stage lung adenocarcinoma identifies aurora kinase inhibition as interceptor of invasion and progression.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29230-7

By:

Yoo, Seungyeul;
Sinha, Abhilasha;
Yang, Dawei;
Altorki, Nasser K.;
Tandon, Radhika;
Wang, Wenhui;
Chavez, Deebly;
Lee, Eunjee;
Patel, Ayushi S.;
Sato, Takashi;
Kong, Ranran;
Ding, Bisen;
Schadt, Eric E.;
Watanabe, Hideo;
Massion, Pierre P.;
Borczuk, Alain C.;
Zhu, Jun;
Powell, Charles A.

Publication type:

Article

Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 7, p. n/a, doi. 10.15252/msb.20145304

By:

Narayanan, Manikandan;
Huynh, Jimmy L;
Wang, Kai;
Yang, Xia;
Yoo, Seungyeul;
McElwee, Joshua;
Zhang, Bin;
Zhang, Chunsheng;
Lamb, John R;
Xie, Tao;
Suver, Christine;
Molony, Cliona;
Melquist, Stacey;
Johnson, Andrew D;
Fan, Guoping;
Stone, David J;
Schadt, Eric E;
Casaccia, Patrizia;
Emilsson, Valur;
Zhu, Jun

Publication type:

Article

A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-0720-0

By:

Wang, Li;
Sebra, Robert P.;
Sfakianos, John P.;
Allette, Kimaada;
Wang, Wenhui;
Yoo, Seungyeul;
Bhardwaj, Nina;
Schadt, Eric E.;
Yao, Xin;
Galsky, Matthew D.;
Zhu, Jun

Publication type:

Article

Epigenome-wide differences in pathology-free regions of multiple sclerosis-affected brains.

Published in:

Nature Neuroscience, 2014, v. 17, n. 1, p. 121, doi. 10.1038/nn.3588

By:

Huynh, Jimmy L;
Garg, Paras;
Thin, Tin Htwe;
Yoo, Seungyeul;
Dutta, Ranjan;
Trapp, Bruce D;
Haroutunian, Vahram;
Zhu, Jun;
Donovan, Michael J;
Sharp, Andrew J;
Casaccia, Patrizia

Publication type:

Article

Temporal genetic association and temporal genetic causality methods for dissecting complex networks.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06203-3

By:

Lin, Luan;
Chen, Quan;
Hirsch, Jeanne P.;
Yoo, Seungyeul;
Yeung, Kayee;
Bumgarner, Roger E.;
Tu, Zhidong;
Schadt, Eric E.;
Zhu, Jun

Publication type:

Article

Targeting ERRα promotes cytotoxic effects against acute myeloid leukemia through suppressing mitochondrial oxidative phosphorylation.

Published in:

Journal of Hematology & Oncology, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13045-022-01372-7

By:

Seo, Wonhyoung;
Yoo, Seungyeul;
Zhong, Yi;
Lee, Sang-Hee;
Woo, Soo-Yeon;
Choi, Hee-Seon;
Won, Minho;
Roh, Taylor;
Jeon, Sang Min;
Kim, Kyeong Tae;
Silwal, Prashanta;
Lee, Min Joung;
Heo, Jun Young;
Lawlor, Nathan;
Kim, Sup;
Lee, Dongjun;
Kim, Jin-Man;
Song, Ik-Chan;
Zhu, Jun;
Jo, Eun-Kyeong

Publication type:

Article

A Network Analysis of Multiple Myeloma Related Gene Signatures.

Published in:

Cancers, 2019, v. 11, n. 10, p. 1452, doi. 10.3390/cancers11101452

By:

Liu, Yu;
Yu, Haocheng;
Yoo, Seungyeul;
Lee, Eunjee;
Laganà, Alessandro;
Parekh, Samir;
Schadt, Eric E.;
Wang, Li;
Zhu, Jun

Publication type:

Article

MODMatcher: Multi-Omics Data Matcher for Integrative Genomic Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003790

By:

Yoo, Seungyeul;
Huang, Tao;
Campbell, Joshua D.;
Lee, Eunjee;
Tu, Zhidong;
Geraci, Mark W.;
Powell, Charles A.;
Schadt, Eric E.;
Spira, Avrum;
Zhu, Jun

Publication type:

Article

Transcriptional Circuitry of NKX2-1 and SOX1 Defines an Unrecognized Lineage Subtype of Small-Cell Lung Cancer.

Published in:

American Journal of Respiratory & Critical Care Medicine, 2022, v. 206, n. 12, p. 1480, doi. 10.1164/rccm.202110-2358OC

By:

Ranran Kong;
Patel, Ayushi S.;
Takashi Sato;
Feng Jiang;
Seungyeul Yoo;
Li Bao;
Abhilasha Sinha;
Yang Tian;
Fridrikh, Maya;
Shuhui Liu;
Jie Feng;
Xijing He;
Jiantao Jiang;
Yuefeng Ma;
Grullon, Karina;
Dawei Yang;
Powell, Charles A.;
Beasley, Mary Beth;
Jun Zhu;
Snyder, Eric L.

Publication type:

Article

Impact of non-neoplastic vs intratumoural hepatitis B viral DNA and replication on hepatocellular carcinoma recurrence.

Published in:

2016

By:

Wang, Qin;
Lin, Luan;
Yoo, Seungyeul;
Wang, Wenhui;
Blank, Sima;
Fiel, M Isabel;
Kadri, Hena;
Luan, Wei;
Warren, Leslie;
Zhu, Jun;
Hiotis, Spiros P

Publication type:

journal article

A probabilistic multi-omics data matching method for detecting sample errors in integrative analysis.

Published in:

GigaScience, 2019, v. 8, n. 7, p. N.PAG, doi. 10.1093/gigascience/giz080

By:

Lee, Eunjee;
Yoo, Seungyeul;
Wang, Wenhui;
Tu, Zhidong;
Zhu, Jun

Publication type:

Article

HBV genome-enriched single cell sequencing revealed heterogeneity in HBV-driven hepatocellular carcinoma (HCC).

Published in:

BMC Medical Genomics, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s12920-022-01264-2

By:

Wang, Wenhui;
Chen, Yan;
Wu, Liang;
Zhang, Yi;
Yoo, Seungyeul;
Chen, Quan;
Liu, Shiping;
Hou, Yong;
Chen, Xiao-ping;
Chen, Qian;
Zhu, Jun

Publication type:

Article

Integrative Analysis of DNA Methylation and Gene Expression Data Identifies EPAS1 as a Key Regulator of COPD.

Published in:

PLoS Genetics, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pgen.1004898

By:

Yoo, Seungyeul;
Takikawa, Sachiko;
Geraghty, Patrick;
Argmann, Carmen;
Campbell, Joshua;
Lin, Luan;
Huang, Tao;
Tu, Zhidong;
Feronjy, Robert;
Spira, Avrum;
Schadt, Eric E.;
Powell, Charles A.;
Zhu, Jun

Publication type:

Article