Works matching AU Seshan, Venkatraman E

Results: 44

False Discovery Rates for Rare Variants From Sequenced Data.

Published in:

Genetic Epidemiology, 2015, v. 39, n. 2, p. 65, doi. 10.1002/gepi.21880

By:

Capanu , Marinela;
Seshan, Venkatraman E.

Publication type:

Article

Feasibility and Predictability of Perioperative PET and Estrogen Receptor Ligand in Patients with Invasive Breast Cancer.

Published in:

Journal of Nuclear Medicine, 2013, v. 54, n. 10, p. 1697, doi. 10.2967/jnumed.112.113373

By:

Gemignani, Mary L.;
Patil, Sujata;
Seshan, Venkatraman E.;
Sampson, Michelle;
Humm, John L.;
Lewis, Jason S.;
Brogi, Edi;
Larson, Steven M.;
Morrow, Monica;
Pandit-Taskar, Neeta

Publication type:

Article

Identifying Etiologically Distinct Sub-Types of Cancer: A Demonstration Project Involving Breast Cancer.

Published in:

Cancer Medicine, 2015, v. 4, n. 9, p. 1432, doi. 10.1002/cam4.456

By:

Begg, Colin B.;
Orlow, Irene;
Zabor, Emily C.;
Arora, Arshi;
Sharma, Ajay;
Seshan, Venkatraman E.;
Bernstein, Jonine L.

Publication type:

Article

Clinical and Genomic Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2) Infections in mRNA Vaccinated Health Care Personnel in New York City.

Published in:

Clinical Infectious Diseases, 2022, v. 75, n. 1, p. e774, doi. 10.1093/cid/ciab886

By:

Robilotti, Elizabeth V;
Whiting, Karissa;
Lucca, Anabella;
Poon, Chester;
Guest, Rebecca;
McMillen, Tracy;
Jani, Krupa;
Solovyov, Alexander;
Kelson, Suzanne;
Browne, Kevin;
Freeswick, Scott;
Hohl, Tobias M;
Korenstein, Deborah;
Ruchnewitz, Denis;
Lässig, Michael;
Łuksza, Marta;
Greenbaum, Benjamin;
Seshan, Venkatraman E;
Babady, N Esther;
Kamboj, Mini

Publication type:

Article

The anti-histaminic cyproheptadine synergizes the antineoplastic activity of bortezomib in mantle cell lymphoma through its effects as a histone deacetylase inhibitor.

Published in:

British Journal of Haematology, 2009, v. 146, n. 6, p. 656, doi. 10.1111/j.1365-2141.2009.07797.x

By:

Paoluzzi, Luca;
Scotto, Luigi;
Marchi, Enrica;
Seshan, Venkatraman E.;
O'Connor, Owen A.

Publication type:

Article

RE: "A MULTINOMIAL REGRESSION APPROACH TO MODEL OUTCOME HETEROGENEITY".

Published in:

2018

By:

Begg, Colin B.;
Seshan, Venkatraman E.;
Zabor, Emily C.

Publication type:

Letter to the Editor

An EM algorithm to improve the estimation of the probability of clonal relatedness of pairs of tumors in cancer patients.

Published in:

BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3148-z

By:

Mauguen, Audrey;
Seshan, Venkatraman E.;
Ostrovnaya, Irina;
Begg, Colin B.

Publication type:

Article

Understanding risk factors for endometrial cancer in young women.

Published in:

JNCI: Journal of the National Cancer Institute, 2025, v. 117, n. 1, p. 76, doi. 10.1093/jnci/djae210

By:

Peeri, Noah Charles;
Bertrand, Kimberly A;
Na, Renhua;
Vivo, Immaculata De;
Setiawan, Veronica Wendy;
Seshan, Venkatraman E;
Alemany, Laia;
Chen, Yu;
Clarke, Megan A;
Clendenen, Tess;
Cook, Linda S;
Costas, Laura;
Maso, Luigino Dal;
Freudenheim, Jo L;
Friedenreich, Christine M;
Gierach, Gretchen L;
Goodman, Marc T;
Vecchia, Carlo La;
Levi, Fabio;
Lopez-Querol, Marta

Publication type:

Article

Testing clonal relatedness of two tumors from the same patient based on their mutational profiles: update of the Clonality R package.

Published in:

Bioinformatics, 2019, v. 35, n. 22, p. 4776, doi. 10.1093/bioinformatics/btz486

By:

Mauguen, Audrey;
Seshan, Venkatraman E;
Begg, Colin B;
Ostrovnaya, Irina

Publication type:

Article

Parent-specific copy number in paired tumor–normal studies using circular binary segmentation.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2038, doi. 10.1093/bioinformatics/btr329

By:

Olshen, Adam B.;
Bengtsson, Henrik;
Neuvial, Pierre;
Spellman, Paul T.;
Olshen, Richard A.;
Seshan, Venkatraman E.

Publication type:

Article

Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1698, doi. 10.1093/bioinformatics/btr267

By:

Ostrovnaya, Irina;
Seshan, Venkatraman E.;
Olshen, Adam B.;
Begg, Colin B.

Publication type:

Article

Landscape of mutations in early stage primary cutaneous melanoma: An InterMEL study.

Published in:

Pigment Cell & Melanoma Research, 2022, v. 35, n. 6, p. 605, doi. 10.1111/pcmr.13058

By:

Luo, Li;
Shen, Ronglai;
Arora, Arshi;
Orlow, Irene;
Busam, Klaus J.;
Lezcano, Cecilia;
Lee, Tim K.;
Hernando, Eva;
Gorlov, Ivan;
Amos, Christopher;
Ernstoff, Marc S.;
Seshan, Venkatraman E.;
Cust, Anne E.;
Wilmott, James;
Scolyer, Richard A.;
Mann, Graham;
Nagore, Eduardo;
Funchain, Pauline;
Ko, Jennifer;
Ngo, Peter

Publication type:

Article

A conceptual and methodological framework for investigating etiologic heterogeneity.

Published in:

Statistics in Medicine, 2013, v. 32, n. 29, p. 5039, doi. 10.1002/sim.5902

By:

Begg, Colin B.;
Zabor, Emily C.;
Bernstein, Jonine L.;
Bernstein, Leslie;
Press, Michael F.;
Seshan, Venkatraman E.

Publication type:

Article

Comparing ROC curves derived from regression models.

Published in:

Statistics in Medicine, 2013, v. 32, n. 9, p. 1483, doi. 10.1002/sim.5648

By:

Seshan, Venkatraman E.;
Gönen, Mithat;
Begg, Colin B.

Publication type:

Article

A metastasis or a second independent cancer? Evaluating the clonal origin of tumors using array copy number data.

Published in:

Statistics in Medicine, 2010, v. 29, n. 15, p. 1608, doi. 10.1002/sim.3866

By:

Ostrovnaya, Irina;
Olshen, Adam B.;
Seshan, Venkatraman E.;
Orlow, Irene;
Albertson, Donna G.;
Begg, Colin B.

Publication type:

Article

Enhancing Radioiodine Incorporation in BRAF-Mutant, Radioiodine-Refractory Thyroid Cancers with Vemurafenib and the Anti-ErbB3 Monoclonal Antibody CDX-3379: Results of a Pilot Clinical Trial.

Published in:

Thyroid, 2022, v. 32, n. 3, p. 273, doi. 10.1089/thy.2021.0565

By:

Tchekmedyian, Vatche;
Dunn, Lara;
Sherman, Eric;
Baxi, Shrujal S.;
Grewal, Ravinder K.;
Larson, Steven M.;
Pentlow, Keith S.;
Haque, Sofia;
Tuttle, R. Michael;
Sabra, Mona M.;
Fish, Stephanie;
Boucai, Laura;
Walters, Jamie;
Ghossein, Ronald A.;
Seshan, Venkatraman E.;
Knauf, Jeffrey A.;
Pfister, David G.;
Fagin, James A.;
Ho, Alan L.

Publication type:

Article

Identification of prognostic molecular biomarkers in 157 HPV‐positive and HPV‐negative squamous cell carcinomas of the oropharynx.

Published in:

International Journal of Cancer, 2019, v. 145, n. 11, p. 3152, doi. 10.1002/ijc.32412

By:

Dogan, Snjezana;
Xu, Bin;
Middha, Sumit;
Vanderbilt, Chad M.;
Bowman, Anita S.;
Migliacci, Jocelyn;
Morris, Luc G.T.;
Seshan, Venkatraman E.;
Ganly, Ian

Publication type:

Article

Contralateral breast cancers: Independent cancers or metastases?

Published in:

International Journal of Cancer, 2018, v. 142, n. 2, p. 347, doi. 10.1002/ijc.31051

By:

Begg, Colin B.;
Ostrovnaya, Irina;
Geyer, Felipe C.;
Papanastasiou, Anastasios D.;
Ng, Charlotte K. Y.;
Sakr, Rita A.;
Bernstein, Jonine L.;
Burke, Kathleen A.;
King, Tari A.;
Piscuoglio, Salvatore;
Mauguen, Audrey;
Orlow, Irene;
Weigelt, Britta;
Seshan, Venkatraman E.;
Morrow, Monica;
Reis‐Filho, Jorge S.

Publication type:

Article

Asynchronous fate decisions by single cells collectively ensure consistent lineage composition in the mouse blastocyst.

Published in:

Nature Communications, 2016, v. 7, n. 11, p. 13463, doi. 10.1038/ncomms13463

By:

Saiz, Néstor;
Williams, Kiah M.;
Seshan, Venkatraman E.;
Hadjantonakis, Anna-Katerina

Publication type:

Article

Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00898-8

By:

Tsui, Dana W. Y.;
Cheng, Michael L.;
Shady, Maha;
Yang, Julie L.;
Stephens, Dennis;
Won, Helen;
Srinivasan, Preethi;
Huberman, Kety;
Meng, Fanli;
Jing, Xiaohong;
Patel, Juber;
Hasan, Maysun;
Johnson, Ian;
Gedvilaite, Erika;
Houck-Loomis, Brian;
Socci, Nicholas D.;
Selcuklu, S. Duygu;
Seshan, Venkatraman E.;
Zhang, Hongxin;
Chakravarty, Debyani

Publication type:

Article

Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13073-020-00804-8

By:

Arora, Arshi;
Olshen, Adam B.;
Seshan, Venkatraman E.;
Shen, Ronglai

Publication type:

Article

Validity of a method for identifying disease subtypes that are etiologically heterogeneous.

Published in:

Statistical Methods in Medical Research, 2021, v. 30, n. 9, p. 2045, doi. 10.1177/09622802211032704

By:

Zabor, Emily C;
Seshan, Venkatraman E;
Wang, Shuang;
Begg, Colin B

Publication type:

Article

Estimating the empirical Lorenz curve and Gini coefficient in the presence of error with nested data.

Published in:

Statistics in Medicine, 2008, v. 27, n. 16, p. 3191, doi. 10.1002/sim.3151

By:

Moskowitz, Chaya S.;
Seshan, Venkatraman E.;
Riedel, Elyn R.;
Begg, Colin B.

Publication type:

Article

TALK score: Development and validation of a prognostic model for predicting larynx preservation outcome.

Published in:

Laryngoscope, 2012, v. 122, n. 5, p. 1043, doi. 10.1002/lary.23220

By:

Sherman, Eric J.;
Fisher, Susan G.;
Kraus, Dennis H.;
Zelefsky, Michael J.;
Seshan, Venkatraman E.;
Singh, Bhuvanesh;
Shaha, Ashok R.;
Shah, Jatin P.;
Wolf, Gregory T.;
Pfister, David G.

Publication type:

Article

Inference for the difference in the area under the ROC curve derived from nested binary regression models.

Published in:

2017

By:

HELLER, GLENN;
SESHAN, VENKATRAMAN E.;
MOSKOWITZ, CHAYA S.;
GÖNEN, MITHAT;
Gönen, Mithat

Publication type:

journal article

FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 1, doi. 10.1093/nar/gkw520

By:

Ronglai Shen;
Seshan, Venkatraman E.

Publication type:

Article

Clonal relatedness between lobular carcinoma in situ and synchronous malignant lesions.

Published in:

2012

By:

Andrade, Victor P;
Ostrovnaya, Irina;
Seshan, Venkatraman E;
Morrogh, Mary;
Giri, Dilip;
Olvera, Narciso;
De Brot, Marina;
Morrow, Monica;
Begg, Colin B;
King, Tari A

Publication type:

journal article

Genomic investigation of etiologic heterogeneity: methodologic challenges.

Published in:

BMC Medical Research Methodology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2288-14-138

By:

Begg, Colin B.;
Seshan, Venkatraman E.;
Zabor, Emily C.;
Furberg, Helena;
Arora, Arshi;
Shen, Ronglai;
Maranchie, Jodi K.;
Nielsen, Matthew E.;
Rathmell, W. Kimryn;
Signoretti, Sabina;
Tamboli, Pheroze;
Karam, Jose A.;
Choueiri, Toni K.;
Hakimi, A. Ari;
Hsieh, James J.

Publication type:

Article

A high density assay format for the detection of novel cytotoxic agents in large chemical libraries.

Published in:

Journal of Enzyme Inhibition & Medicinal Chemistry, 2008, v. 23, n. 6, p. 931, doi. 10.1080/14756360701810082

By:

Shum, David;
Radu, Constantin;
Kim, Earl;
Cajuste, Muriel;
Shao, Yufang;
Seshan, Venkatraman E.;
Djaballah, Hakim

Publication type:

Article

The Rho GTPase Rnd1 suppresses mammary tumorigenesis and EMT by restraining Ras-MAPK signalling.

Published in:

Nature Cell Biology, 2015, v. 17, n. 1, p. 81, doi. 10.1038/ncb3082

By:

Okada, Tomoyo;
Sinha, Surajit;
Esposito, Ilaria;
Schiavon, Gaia;
López-Lago, Miguel A.;
Su, Wenjing;
Pratilas, Christine A.;
Abele, Cristina;
Hernandez, Jonathan M.;
Ohara, Masahiro;
Okada, Morihito;
Viale, Agnes;
Heguy, Adriana;
Socci, Nicholas D.;
Sapino, Anna;
Seshan, Venkatraman E.;
Long, Stephen;
Inghirami, Giorgio;
Rosen, Neal;
Giancotti, Filippo G.

Publication type:

Article

Integrative Subtype Discovery in Glioblastoma Using iCluster.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035236

By:

Ronglai Shen;
Qianxing Mo;
Schultz, Nikolaus;
Seshan, Venkatraman E.;
Olshen, Adam B.;
Huse, Jason;
Ladanyi, Marc;
Sander, Chris

Publication type:

Article

Testing tumors from different anatomic sites for clonal relatedness using somatic mutation data.

Published in:

Biometrics, 2021, v. 77, n. 1, p. 283, doi. 10.1111/biom.13256

By:

Ostrovnaya, Irina;
Mauguen, Audrey;
Seshan, Venkatraman E.;
Begg, Colin B.

Publication type:

Article

Estimating the probability of clonal relatedness of pairs of tumors in cancer patients.

Published in:

Biometrics, 2018, v. 74, n. 1, p. 321, doi. 10.1111/biom.12710

By:

Mauguen, Audrey;
Seshan, Venkatraman E.;
Ostrovnaya, Irina;
Begg, Colin B.

Publication type:

Article

Comparison of Properties of Tests for Assessing Tumor Clonality.

Published in:

Biometrics, 2008, v. 64, n. 4, p. 1018, doi. 10.1111/j.1541-0420.2008.00988.x

By:

Ostrovnaya, Irina;
Seshan, Venkatraman E.;
Begg, Colin B.

Publication type:

Article

Vemurafenib Redifferentiation of BRAF Mutant, RAI-Refractory Thyroid Cancers.

Published in:

Journal of Clinical Endocrinology & Metabolism, 2019, v. 104, n. 5, p. 1417, doi. 10.1210/jc.2018-01478

By:

Dunn, Lara A.;
Sherman, Eric J.;
Baxi, Shrujal S.;
Tchekmedyian, Vatche;
Grewal, Ravinder K.;
Larson, Steven M.;
Pentlow, Keith S.;
Haque, Sofia;
Tuttle, R. Michael;
Sabra, Mona M.;
Fish, Stephanie;
Boucai, Laura;
Walters, Jamie;
Ghossein, Ronald A.;
Seshan, Venkatraman E.;
Ai Ni;
Duan Li;
Knauf, Jeffrey A.;
Pfister, David G.;
Fagin, James A.

Publication type:

Article

Vemurafenib Redifferentiation of BRAF Mutant, RAI-Refractory Thyroid Cancers.

Published in:

2018

By:

Dunn, Lara A;
Sherman, Eric J;
Baxi, Shrujal S;
Tchekmedyian, Vatche;
Grewal, Ravinder K;
Larson, Steven M;
Pentlow, Keith S;
Haque, Sofia;
Tuttle, R Michael;
Sabra, Mona M;
Fish, Stephanie;
Boucai, Laura;
Walters, Jamie;
Ghossein, Ronald A;
Seshan, Venkatraman E;
Ni, Ai;
Li, Duan;
Knauf, Jeffrey A;
Pfister, David G;
Fagin, James A

Publication type:

journal article

Mitochondrial DNA copy number variation across human cancers.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.10769

By:

Reznik, Ed;
Miller, Martin L.;
Şenbabaoğlu, Yasin;
Riaz, Nadeem;
Sarungbam, Judy;
Tickoo, Satish K.;
Al-Ahmadie, Hikmat A.;
Lee, William;
Seshan, Venkatraman E.;
Hakimi, A. Ari;
Sander, Chris

Publication type:

Article

Defining Cancer Subtypes With Distinctive Etiologic Profiles: An Application to the Epidemiology of Melanoma.

Published in:

Journal of the American Statistical Association, 2017, v. 112, n. 517, p. 54, doi. 10.1080/01621459.2016.1191499

By:

Mauguen, Audrey;
Zabor, Emily C.;
Thomas, Nancy E.;
Berwick, Marianne;
Seshan, Venkatraman E.;
Begg, Colin B.

Publication type:

Article

Testing the incremental predictive accuracy of new markers.

Published in:

Clinical Trials, 2013, v. 10, n. 5, p. 690, doi. 10.1177/1740774513496490

By:

Begg, Colin B;
Gonen, Mithat;
Seshan, Venkatraman E

Publication type:

Article

Clonal relationships between lobular carcinoma in situ and other breast malignancies.

Published in:

2016

By:

Begg, Colin B.;
Ostrovnaya, Irina;
Carniello, Jose V. Scarpa;
Sakr, Rita A.;
Giri, Dilip;
Towers, Russell;
Schizas, Michail;
De Brot, Marina;
Andrade, Victor P.;
Mauguen, Audrey;
Seshan, Venkatraman E.;
King, Tari A.

Publication type:

journal article

Targeted delivery of a PD-1-blocking scFv by CAR-T cells enhances anti-tumor efficacy in vivo.

Published in:

Nature Biotechnology, 2018, v. 36, n. 10, p. 847, doi. 10.1038/nbt.4195

By:

Rafiq, Sarwish;
Yeku, Oladapo O;
Jackson, Hollie J;
Purdon, Terence J;
van Leeuwen, Dayenne G;
Drakes, Dylan J;
Song, Mei;
Miele, Matthew M;
Li, Zhuoning;
Wang, Pei;
Yan, Su;
Xiang, Jingyi;
Ma, Xiaojing;
Seshan, Venkatraman E;
Hendrickson, Ronald C;
Liu, Cheng;
Brentjens, Renier J

Publication type:

Article

Targeted delivery of a PD-1-blocking scFv by CAR-T cells enhances anti-tumor efficacy in vivo.

Published in:

Nature Biotechnology, 2018, v. 36, n. 9, p. 847, doi. 10.1038/nbt.4195

By:

Rafiq, Sarwish;
Yeku, Oladapo O;
Jackson, Hollie J;
Purdon, Terence J;
van Leeuwen, Dayenne G;
Drakes, Dylan J;
Song, Mei;
Miele, Matthew M;
Li, Zhuoning;
Wang, Pei;
Yan, Su;
Xiang, Jingyi;
Ma, Xiaojing;
Seshan, Venkatraman E;
Hendrickson, Ronald C;
Liu, Cheng;
Brentjens, Renier J

Publication type:

Article

A Critical Analysis of Prognostic Factors in North American Patients With Human T-Cell Lymphotropic Virus Type-1-Associated Adult T-Cell Leukemia/Lymphoma.

Published in:

Cancer (0008543X), 2010, v. 116, n. 14, p. 3438, doi. 10.1002/cncr.25147

By:

Phillips, Adrienne A.;
Shapira, Luliana;
Willim, Robert D.;
Sanmugarajah, Jasotha;
Solomon, William B.;
Horwitz, Steven M.;
Savage, David G.;
Bhagat, Govind;
Soft, Gerald;
Zain, Jasmine M.;
Alobeid, Bachir;
Seshan, Venkatraman E.;
O'Connor, Owen A.

Publication type:

Article

Improved Survival for Fallopian Tube Cancer.

Published in:

Cancer (0008543X), 2008, v. 113, n. 12, p. 3298, doi. 10.1002/cncr.23957

By:

Wethington, Stephanie L.;
Herzog, Thomas J.;
Seshan, Venkatraman E.;
Bansal, Nisha;
Schiff, Peter B.;
Burke, William M.;
Cohen, Carmel J.;
Wright, Jason O.

Publication type:

Article