Works by Seshadri, Rekha


Results: 42
    1

    CAMERA: A Community Resource for Metagenomics.

    Published in:
    PLoS Biology, 2007, v. 5, n. 3, p. 0394, doi. 10.1371/journal.pbio.0050075
    By:
    • Seshadri, Rekha;
    • Kravitz, Saul A.;
    • Smarr, Larry;
    • Gilna, Paul;
    • Frazier, Marvin
    Publication type:
    Article
    2

    High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76<sup>T</sup>, isolated from Glycine max (L.) Merr.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2
    By:
    • Reeve, Wayne;
    • van Berkum, Peter;
    • Ardley, Julie;
    • Tian, Rui;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Elia, Patrick;
    • Reddy, T. B. K.;
    • Pillay, Manoj;
    • Varghese, Neha;
    • Seshadri, Rekha;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos
    Publication type:
    Article
    3

    High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4
    By:
    • Klonowska, Agnieszka;
    • López-López, Aline;
    • Moulin, Lionel;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Tian, Rui;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Woyke, Tanja;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    4

    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    5
    6
    7
    8
    9
    10
    11
    12
    13
    14

    The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.

    Published in:
    Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.735911
    By:
    • Eardly, Bertrand;
    • Meor Osman, Wan Adnawani;
    • Ardley, Julie;
    • Zandberg, Jaco;
    • Gollagher, Margaret;
    • van Berkum, Peter;
    • Elia, Patrick;
    • Marinova, Dora;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Loedolff, Matthys;
    • Laird, Damian W.;
    • Reeve, Wayne
    Publication type:
    Article
    15
    16
    17

    High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0270-2
    By:
    • Meor Osman, Wan Adnawani;
    • van Berkum, Peter;
    • León-Barrios, Milagros;
    • Velázquez, Encarna;
    • Elia, Patrick;
    • Rui Tian;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Baeshen, Mohamed N.;
    • Nabeeh Baeshen, Naseebh;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    18

    Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.

    Published in:
    Environmental Microbiology, 2016, v. 18, n. 4, p. 1122, doi. 10.1111/1462-2920.13095
    By:
    • Oulas, Anastasis;
    • Polymenakou, Paraskevi N.;
    • Seshadri, Rekha;
    • Tripp, H. James;
    • Mandalakis, Manolis;
    • Paez ‐ Espino, A. David;
    • Pati, Amrita;
    • Chain, Patrick;
    • Nomikou, Paraskevi;
    • Carey, Steven;
    • Kilias, Stephanos;
    • Christakis, Christos;
    • Kotoulas, Georgios;
    • Magoulas, Antonios;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    19
    20

    Author Correction: A genomic catalog of Earth's microbiomes.

    Published in:
    2021
    By:
    • Nayfach, Stephen;
    • Roux, Simon;
    • Seshadri, Rekha;
    • Udwary, Daniel;
    • Varghese, Neha;
    • Schulz, Frederik;
    • Wu, Dongying;
    • Paez-Espino, David;
    • Chen, I-Min;
    • Huntemann, Marcel;
    • Palaniappan, Krishna;
    • Ladau, Joshua;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Nielsen, Torben;
    • Kirton, Edward;
    • Faria, José P.;
    • Edirisinghe, Janaka N.;
    • Henry, Christopher S.;
    • Jungbluth, Sean P.
    Publication type:
    Correction Notice
    21

    Publisher Correction: A genomic catalog of Earth's microbiomes.

    Published in:
    2021
    By:
    • Nayfach, Stephen;
    • Roux, Simon;
    • Seshadri, Rekha;
    • Udwary, Daniel;
    • Varghese, Neha;
    • Schulz, Frederik;
    • Wu, Dongying;
    • Paez-Espino, David;
    • Chen, I-Min;
    • Huntemann, Marcel;
    • Palaniappan, Krishna;
    • Ladau, Joshua;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Nielsen, Torben;
    • Kirton, Edward;
    • Faria, José P.;
    • Edirisinghe, Janaka N.;
    • Henry, Christopher S.;
    • Jungbluth, Sean P.
    Publication type:
    Correction Notice
    22

    A genomic catalog of Earth's microbiomes.

    Published in:
    Nature Biotechnology, 2021, v. 39, n. 4, p. 499, doi. 10.1038/s41587-020-0718-6
    By:
    • Nayfach, Stephen;
    • Roux, Simon;
    • Seshadri, Rekha;
    • Udwary, Daniel;
    • Varghese, Neha;
    • Schulz, Frederik;
    • Wu, Dongying;
    • Paez-Espino, David;
    • Chen, I-Min;
    • Huntemann, Marcel;
    • Palaniappan, Krishna;
    • Ladau, Joshua;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Nielsen, Torben;
    • Kirton, Edward;
    • Faria, José P.;
    • Edirisinghe, Janaka N.;
    • Henry, Christopher S.;
    • Jungbluth, Sean P.
    Publication type:
    Article
    23

    Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

    Published in:
    Nature Biotechnology, 2018, v. 36, n. 4, p. 368, doi. 10.1038/nbt0418-368c
    By:
    • Mukherjee, Supratim;
    • Seshadri, Rekha;
    • Varghese, Neha J;
    • Eloe-Fadrosh, Emiley A;
    • Meier-Kolthoff, Jan P;
    • Göker, Markus;
    • Coates, R Cameron;
    • Hadjithomas, Michalis;
    • Pavlopoulos, Georgios A;
    • Paez-Espino, David;
    • Yoshikuni, Yasuo;
    • Visel, Axel;
    • Whitman, William B;
    • Garrity, George M;
    • Eisen, Jonathan A;
    • Hugenholtz, Philip;
    • Pati, Amrita;
    • Ivanova, Natalia N;
    • Woyke, Tanja;
    • Klenk, Hans-Peter
    Publication type:
    Article
    24

    Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

    Published in:
    Nature Biotechnology, 2018, v. 36, n. 4, p. 359, doi. 10.1038/nbt.4110
    By:
    • Seshadri, Rekha;
    • Leahy, Sinead C;
    • Attwood, Graeme T;
    • Teh, Koon Hoong;
    • Lambie, Suzanne C;
    • Cookson, Adrian L;
    • Eloe-Fadrosh, Emiley A;
    • Pavlopoulos, Georgios A;
    • Hadjithomas, Michalis;
    • Varghese, Neha J;
    • Paez-Espino, David;
    • Perry, Rechelle;
    • Henderson, Gemma;
    • Creevey, Christopher J;
    • Terrapon, Nicolas;
    • Lapebie, Pascal;
    • Drula, Elodie;
    • Lombard, Vincent;
    • Rubin, Edward;
    • Kyrpides, Nikos C
    Publication type:
    Article
    25

    1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

    Published in:
    Nature Biotechnology, 2017, v. 35, n. 7, p. 676, doi. 10.1038/nbt.3886
    By:
    • Mukherjee, Supratim;
    • Seshadri, Rekha;
    • Varghese, Neha J;
    • Eloe-Fadrosh, Emiley A;
    • Meier-Kolthoff, Jan P;
    • Göker, Markus;
    • Coates, R Cameron;
    • Hadjithomas, Michalis;
    • Pavlopoulos, Georgios A;
    • Paez-Espino, David;
    • Yoshikuni, Yasuo;
    • Visel, Axel;
    • Whitman, William B;
    • Garrity, George M;
    • Eisen, Jonathan A;
    • Hugenholtz, Philip;
    • Pati, Amrita;
    • Ivanova, Natalia N;
    • Woyke, Tanja;
    • Klenk, Hans-Peter
    Publication type:
    Article
    26

    Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.

    Published in:
    BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6623-z
    By:
    • Klonowska, Agnieszka;
    • Moulin, Lionel;
    • Ardley, Julie Kaye;
    • Braun, Florence;
    • Gollagher, Margaret Mary;
    • Zandberg, Jaco Daniel;
    • Marinova, Dora Vasileva;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha Jacob;
    • Woyke, Tanja;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Kyrpides, Nikos;
    • Reeve, Wayne Gerald
    Publication type:
    Article
    27
    28

    Fur-Regulated Genes in Coxiella burnetii.

    Published in:
    Annals of the New York Academy of Sciences, 2005, v. 1063, n. 1, p. 68, doi. 10.1196/annals.1355.008
    By:
    • BRIGGS, HEATHER L.;
    • WILSON, MARY J.;
    • SESHADRI, REKHA;
    • SAMUEL, JAMES E.
    Publication type:
    Article
    29
    30

    A Comparison of Microbial Genome Web Portals.

    Published in:
    Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.00208
    By:
    • Karp, Peter D.;
    • Ivanova, Natalia;
    • Krummenacker, Markus;
    • Kyrpides, Nikos;
    • Latendresse, Mario;
    • Midford, Peter;
    • Ong, Wai Kit;
    • Paley, Suzanne;
    • Seshadri, Rekha
    Publication type:
    Article
    31

    IMG/M data management and analysis system v.7: content updates and new features.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D723, doi. 10.1093/nar/gkac976
    By:
    • Chen, I-Min A;
    • Chu, Ken;
    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Huntemann, Marcel;
    • Hajek, Patrick;
    • Ritter, Stephan J;
    • Webb, Cody;
    • Wu, Dongying;
    • Varghese, Neha J;
    • Reddy, T B K;
    • Mukherjee, Supratim;
    • Ovchinnikova, Galina;
    • Nolan, Matt;
    • Seshadri, Rekha;
    • Roux, Simon;
    • Visel, Axel;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley A
    Publication type:
    Article
    32
    33

    IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901
    By:
    • Chen, I-Min A;
    • Chu, Ken;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • White, James R;
    • Seshadri, Rekha;
    • Smirnova, Tatyana;
    • Kirton, Edward;
    • Jungbluth, Sean P;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley A;
    • Ivanova, Natalia N;
    • Kyrpides, Nikos C
    Publication type:
    Article
    34
    35

    Genome Degradation in Brucella ovis Corresponds with Narrowing of Its Host Range and Tissue Tropism.

    Published in:
    PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005519
    By:
    • Tsolis, Renee M.;
    • Seshadri, Rekha;
    • Santos, Renato L.;
    • Sangari, Felix J.;
    • Lobo, Juan M. García;
    • de Jong, Maarten F.;
    • Qinghu Ren;
    • Myers, Garry;
    • Brinkac, Lauren M.;
    • Nelson, William C.;
    • DeBoy, Robert T.;
    • Angiuoli, Samuel;
    • Khouri, Hoda;
    • Dimitrov, George;
    • Robinson, Jeffrey R.;
    • Mulligan, Stephanie;
    • Walker, Richard L.;
    • Elzer, Philip E.;
    • Hassan, Karl A.;
    • Paulsen, Ian T.
    Publication type:
    Article
    36

    Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

    Published in:
    2006
    By:
    • Paulsen, Ian T.;
    • Press, Caroline M.;
    • Ravel, Jacques;
    • Kobayashi, Donald Y.;
    • Myers, Garry S. A.;
    • Mavrodi, Dmitri V.;
    • DeBoy, Robert T.;
    • Seshadri, Rekha;
    • Ren, Qinghu;
    • Madupu, Ramana;
    • Dodson, Robert J.;
    • Durkin, A. Scott;
    • Brinkac, Lauren M.;
    • Daugherty, Sean C.;
    • Sullivan, Stephen A.;
    • Rosovitz, Mary J.;
    • Gwinn, Michelle L.;
    • Zhou, Liwei;
    • Schneider, Davd J.;
    • Cartinhour, Samuel W.
    Publication type:
    Correction Notice
    37

    Bacteria to the rescue.

    Published in:
    Nature Biotechnology, 2005, v. 23, n. 10, p. 1236, doi. 10.1038/nbt1005-1236
    By:
    • Seshadri, Rekha;
    • Heidelberg, John
    Publication type:
    Article
    38

    Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

    Published in:
    Nature Biotechnology, 2005, v. 23, n. 7, p. 873, doi. 10.1038/nbt1110
    By:
    • Paulsen, Ian T.;
    • Press, Caroline M.;
    • Ravel, Jacques;
    • Kobayashi, Donald Y.;
    • Myers, Garry S. A.;
    • Mavrodi, Dmitri V.;
    • DeBoy, Robert T.;
    • Seshadri, Rekha;
    • Ren, Qinghu;
    • Madupu, Ramana;
    • Dodson, Robert J.;
    • Durkin, A. Scott;
    • Brinkac, Lauren M.;
    • Daugherty, Sean C.;
    • Sullivan, Stephen A.;
    • Rosovitz, Mary J.;
    • Gwinn, Michelle L.;
    • Zhou, Liwei;
    • Schneider, Davd J.;
    • Cartinhour, Samuel W.
    Publication type:
    Article
    39

    The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

    Published in:
    Nature Biotechnology, 2004, v. 22, n. 5, p. 554, doi. 10.1038/nbt959
    By:
    • Heidelberg, John F.;
    • Seshadri, Rekha;
    • Haveman, Shelley A.;
    • Hemme, Christopher L.;
    • Paulsen, Ian T.;
    • Kolonay, James F.;
    • Eisen, Jonathan A.;
    • Ward, Naomi;
    • Methe, Barbara;
    • Brinkac, Lauren M.;
    • Daugherty, Sean C.;
    • Deboy, Robert T.;
    • Dodson, Robert J.;
    • Durkin, A. Scott;
    • Madupu, Ramana;
    • Nelson, William C.;
    • Sullivan, Steven A.;
    • Fouts, Derrick;
    • Haft, Daniel H.;
    • Selengut, Jeremy
    Publication type:
    Article
    40

    Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis.

    Published in:
    Nature Biotechnology, 2002, v. 20, n. 11, p. 1118, doi. 10.1038/nbt749
    By:
    • Heidelberg, John F.;
    • Paulsen, Ian T.;
    • Nelson, Karen E.;
    • Gaidos, Eric J.;
    • Nelson, William C.;
    • Read, Timothy D.;
    • Eisen, Jonathan A.;
    • Seshadri, Rekha;
    • Ward, Naomi;
    • Methe, Barbara;
    • Clayton, Rebecca A.;
    • Meyer, Terry;
    • Tsapin, Alexandre;
    • Scott, James;
    • Beanan, Maureen;
    • Brinkac, Lauren;
    • Daugherty, Sean;
    • DeBoy, Robert T.;
    • Dodson, Robert J.;
    • Durkin, A. Scott
    Publication type:
    Article
    41
    42

    Comparative Genomics of Emerging Human Ehrlichiosis Agents.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 2, p. 0208, doi. 10.1371/journal.pgen.0020021
    By:
    • Hotopp, Julie C. Dunning;
    • Mingqun Lin;
    • Madupu, Ramana;
    • Crabtree, Jonathan;
    • Angiuoli, Samuel V.;
    • Eisen, Jonathan;
    • Seshadri, Rekha;
    • Qinghu Ren;
    • Wu, Martin;
    • Utterback, Teresa R.;
    • Smith, Shannon;
    • Lewis, Matthew;
    • Khouri, Hoda;
    • Zhang, Chunbin;
    • Hua Niu;
    • Quan Lin;
    • Ohashi, Norio;
    • Ning Zhi;
    • Nelson, William;
    • Brinkac, Lauren M.
    Publication type:
    Article