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p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46666-1
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- Article
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35911-8
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- Article
Identification of chromatin loops from Hi-C interaction matrices by CTCF–CTCF topology classification.
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- NAR Genomics & Bioinformatics, 2022, v. 4, n. 1, p. 1, doi. 10.1093/nargab/lqac021
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- Article
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 19, p. 11005, doi. 10.1093/nar/gkab864
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- Article
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16396-1
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- Article
Parallel sequencing lives, or what makes large sequencing projects successful.
- Published in:
- GigaScience, 2017, v. 6, n. 11, p. 1, doi. 10.1093/gigascience/gix100
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- Article
3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data?
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- WIREs: Computational Molecular Science, 2017, v. 7, n. 5, p. n/a, doi. 10.1002/wcms.1308
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- Article
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005665
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- Article
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
- Published in:
- Molecular Biology & Evolution, 2016, v. 33, n. 6, p. 1635, doi. 10.1093/molbev/msw046
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- Article
Selective constraints on protamine 2 in primates and rodents.
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- BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0588-1
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- Article
Restraint-based three-dimensional modeling of genomes and genomic domains.
- Published in:
- FEBS Letters, 2015, v. 589, n. 20PartA, p. 2987, doi. 10.1016/j.febslet.2015.05.012
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- Article
Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1490, doi. 10.1093/gbe/evv082
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- Article
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains.
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- Nucleic Acids Research, 2015, v. 43, n. 7, p. 3465, doi. 10.1093/nar/gkv221
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- Article
Positive Selection in Nucleoporins Challenges Constraints on Early Expressed Genes in Drosophila Development.
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- Genome Biology & Evolution, 2013, v. 5, n. 11, p. 2231, doi. 10.1093/gbe/evt156
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- Article
Neutral Theory Predicts the Relative Abundance and Diversity of Genetic Elements in a Broad Array of Eukaryotic Genomes.
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- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0063915
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- Article
Evolution of the biosynthesis of di- myo-inositol phosphate, a marker of adaptation to hot marine environments.
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- Environmental Microbiology, 2012, v. 14, n. 3, p. 691, doi. 10.1111/j.1462-2920.2011.02621.x
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- Article
Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group.
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- Evolutionary Bioinformatics, 2012, n. 8, p. 89, doi. 10.4137/EBO.S8484
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- Article
Role of tomato BRANCHED1-like genes in the control of shoot branching.
- Published in:
- Plant Journal, 2011, v. 67, n. 4, p. 701, doi. 10.1111/j.1365-313X.2011.04629.x
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- Article
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W470, doi. 10.1093/nar/gkr408
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- Publication type:
- Article
Natural Selection on Functional Modules, a Genome-Wide Analysis.
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- PLoS Computational Biology, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.pcbi.1001093
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- Article
Recent human evolution has shaped geographical differences in susceptibility to disease.
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- BMC Genomics, 2011, v. 12, n. 1, p. 55, doi. 10.1186/1471-2164-12-55
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- Article