Works by Sengupta, Debarka

Results: 34

Artificial intelligence driven tumor risk stratification from single-cell transcriptomics using phenotype algebra.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.98469

By:

Bhattacharya, Namrata;
Rockstroh, Anja;
Deshpande, Sanket Suhas;
Thomas, Sam Koshy;
Yadav, Anunay;
Goswami, Chitrita;
Chawla, Smriti;
Solomon, Pierre;
Fourgeux, Cynthia;
Ahuja, Gaurav;
Hollier, Brett;
Kumar, Himanshu;
Roquilly, Antoine;
Poschmann, Jeremie;
Lehman, Melanie;
Nelson, Colleen C.;
Sengupta, Debarka

Publication type:

Article

Unlocking The Mysteries of DNA Adducts with Artificial Intelligence.

Published in:

ChemBioChem, 2024, v. 25, n. 1, p. 1, doi. 10.1002/cbic.202300577

By:

Arora, Sakshi;
Satija, Shiva;
Mittal, Aayushi;
Solanki, Saveena;
Mohanty, Sanjay Kumar;
Srivastava, Vaibhav;
Sengupta, Debarka;
Rout, Diptiranjan;
Arul Murugan, Natarajan;
Borkar, Roshan M.;
Ahuja, Gaurav

Publication type:

Article

Erratum: Iyer, A., et al. Integrative Analysis and Machine Learning Based Characterization of Single Circulating Tumor Cells. J. Clin. Med. 2020, 9 , 1206.

Published in:

2021

By:

Iyer, Arvind;
Gupta, Krishan;
Sharma, Shreya;
Hari, Kishore;
Lee, Yi Fang;
Ramalingam, Neevan;
Yap, Yoon Sim;
West, Jay;
Bhagat, Ali Asgar;
Subramani, Balaram Vishnu;
Sabuwala, Burhanuddin;
Zea Tan, Tuan;
Thiery, Jean Paul;
Jolly, Mohit Kumar;
Ramalingam, Naveen;
Sengupta, Debarka

Publication type:

Correction Notice

Integrative Analysis and Machine Learning based Characterization of Single Circulating Tumor Cells.

Published in:

Journal of Clinical Medicine, 2020, v. 9, n. 4, p. 1206, doi. 10.3390/jcm9041206

By:

Iyer, Arvind;
Gupta, Krishan;
Sharma, Shreya;
Hari, Kishore;
Lee, Yi Fang;
Ramalingam, Neevan;
Yap, Yoon Sim;
West, Jay;
Bhagat, Ali Asgar;
Subramani, Balaram Vishnu;
Sabuwala, Burhanuddin;
Tan, Tuan Zea;
Thiery, Jean Paul;
Jolly, Mohit Kumar;
Ramalingam, Naveen;
Sengupta, Debarka

Publication type:

Article

ParSel: Parallel Selection of Micro-RNAs for Survival Classification in Cancers.

Published in:

Molecular Informatics, 2017, v. 36, n. 7, p. n/a, doi. 10.1002/minf.201600141

By:

Sinha, Debajyoti;
Sengupta, Debarka;
Bandyopadhyay, Sanghamitra

Publication type:

Article

GRF: A Greedy Rank Fusion Algorithm for Combining MicroRNA Target Orderings.

Published in:

Molecular Informatics, 2013, v. 32, n. 8, p. 685, doi. 10.1002/minf.201200165

By:

Bandyopadhyay, Sanghamitra;
Sengupta, Debarka;
Maulik, Ujjwal

Publication type:

Article

Transcriptional advantage influence odorant receptor gene choice.

Published in:

Briefings in Functional Genomics, 2023, v. 22, n. 3, p. 281, doi. 10.1093/bfgp/elac052

By:

Mohanty, Sanjay Kumar;
Maryam, Sidrah;
Gautam, Vishakha;
Mittal, Aayushi;
Gupta, Krishan;
Arora, Radhika;
Bhadra, Wrik;
Mishra, Tripti;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

Literature mining discerns latent disease–gene relationships.

Published in:

Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae185

By:

Rai, Priyadarshini;
Jain, Atishay;
Kumar, Shivani;
Sharma, Divya;
Jha, Neha;
Chawla, Smriti;
Raj, Abhijit;
Gupta, Apoorva;
Poonia, Sarita;
Majumdar, Angshul;
Chakraborty, Tanmoy;
Ahuja, Gaurav;
Sengupta, Debarka

Publication type:

Article

Machine-OlF-Action: a unified framework for developing and interpreting machine-learning models for chemosensory research.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1769, doi. 10.1093/bioinformatics/btaa1104

By:

Gupta, Anku;
Choudhary, Mohit;
Mohanty, Sanjay Kumar;
Mittal, Aayushi;
Gupta, Krishan;
Arya, Aditya;
Kumar, Suvendu;
Katyayan, Nikhil;
Dixit, Nilesh Kumar;
Kalra, Siddhant;
Goel, Manshi;
Sahni, Megha;
Singhal, Vrinda;
Mishra, Tripti;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

Analysis of single-cell transcriptomes links enrichment of olfactory receptors with cancer cell differentiation status and prognosis.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01232-5

By:

Kalra, Siddhant;
Mittal, Aayushi;
Gupta, Krishan;
Singhal, Vrinda;
Gupta, Anku;
Mishra, Tripti;
Naidu, Srivatsava;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

Big data analytics in single‐cell transcriptomics: Five grand opportunities.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2021, v. 11, n. 4, p. 1, doi. 10.1002/widm.1414

By:

Bhattacharya, Namrata;
Nelson, Colleen C.;
Ahuja, Gaurav;
Sengupta, Debarka

Publication type:

Article

Feature selection using feature dissimilarity measure and density-based clustering: Application to biological data.

Published in:

Journal of Biosciences, 2015, v. 40, n. 4, p. 721, doi. 10.1007/s12038-015-9556-y

By:

Sengupta, Debarka;
Aich, Indranil;
Bandyopadhyay, Sanghamitra

Publication type:

Article

A combined experimental-computational approach uncovers a role for the Golgi matrix protein Giantin in breast cancer progression.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 4, p. 1, doi. 10.1371/journal.pcbi.1010995

By:

Ghannoum, Salim;
Fantini, Damiano;
Zahoor, Muhammad;
Reiterer, Veronika;
Phuyal, Santosh;
Leoncio Netto, Waldir;
Sørensen, Øystein;
Iyer, Arvind;
Sengupta, Debarka;
Prasmickaite, Lina;
Mælandsmo, Gunhild Mari;
Köhn-Luque, Alvaro;
Farhan, Hesso

Publication type:

Article

deepGraphh: AI-driven web service for graph-based quantitative structure–activity relationship analysis.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac288

By:

Gautam, Vishakha;
Gupta, Rahul;
Gupta, Deepti;
Ruhela, Anubhav;
Mittal, Aayushi;
Mohanty, Sanjay Kumar;
Arora, Sakshi;
Gupta, Ria;
Saini, Chandan;
Sengupta, Debarka;
Murugan, Natarajan Arul;
Ahuja, Gaurav

Publication type:

Article

EcTracker: Tracking and elucidating ectopic expression leveraging large-scale scRNA-seq studies.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab237

By:

Gautam, Vishakha;
Mittal, Aayushi;
Kalra, Siddhant;
Mohanty, Sanjay Kumar;
Gupta, Krishan;
Rani, Komal;
Naidu, Srivatsava;
Mishra, Tripti;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

The Cellular basis of loss of smell in 2019-nCoV-infected individuals.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 873, doi. 10.1093/bib/bbaa168

By:

Gupta, Krishan;
Mohanty, Sanjay Kumar;
Mittal, Aayushi;
Kalra, Siddhant;
Kumar, Suvendu;
Mishra, Tripti;
Ahuja, Jatin;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

Gene expression based inference of cancer drug sensitivity.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33291-z

By:

Chawla, Smriti;
Rockstroh, Anja;
Lehman, Melanie;
Ratther, Ellca;
Jain, Atishay;
Anand, Anuneet;
Gupta, Apoorva;
Bhattacharya, Namrata;
Poonia, Sarita;
Rai, Priyadarshini;
Das, Nirjhar;
Majumdar, Angshul;
Jayadeva;
Ahuja, Gaurav;
Hollier, Brett G.;
Nelson, Colleen C.;
Sengupta, Debarka

Publication type:

Article

Tumor-derived circulating endothelial cell clusters in colorectal cancer.

Published in:

Science Translational Medicine, 2016, v. 8, n. 345, p. 1, doi. 10.1126/scitranslmed.aad7369

By:

Cima, Igor;
Say Li Kong;
Sengupta, Debarka;
Tan, Iain B.;
Wai Min Phyo;
Lee, Daniel;
Min Hu;
Iliescu, Ciprian;
Alexander, Irina;
Wei Lin Goh;
Rahmani, Mehran;
Suhaimi, Nur-Afidah Mohamed;
Vo, Jess H.;
Tai, Joyce A.;
Tan, Joanna H.;
Chua, Clarinda;
Ten, Rachel;
Wan Jun Lim;
Min Hoe Chew;
Hauser, Charlotte A. E.

Publication type:

Article

Non-canonical NF-κB signaling limits the tolerogenic β-catenin-Raldh2 axis in gut dendritic cells to exacerbate intestinal pathologies.

Published in:

EMBO Journal, 2024, v. 43, n. 18, p. 3895, doi. 10.1038/s44318-024-00182-6

By:

Deka, Alvina;
Kumar, Naveen;
Basu, Swapnava;
Chawla, Meenakshi;
Bhattacharya, Namrata;
Ali, Sk Asif;
Bhawna;
Madan, Upasna;
Kumar, Shakti;
Das, Bhabatosh;
Sengupta, Debarka;
Awasthi, Amit;
Basak, Soumen

Publication type:

Article

Ultrasound placental image texture analysis using artificial intelligence to predict hypertension in pregnancy.

Published in:

Journal of Maternal-Fetal & Neonatal Medicine, 2022, v. 35, n. 25, p. 5587, doi. 10.1080/14767058.2021.1887847

By:

Gupta, Krishan;
Balyan, Kirti;
Lamba, Bhumika;
Puri, Manju;
Sengupta, Debarka;
Kumar, Manisha

Publication type:

Article

Improved dropClust R package with integrative analysis support for scRNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 6, p. 1946, doi. 10.1093/bioinformatics/btz823

By:

Sinha, Debajyoti;
Sinha, Pradyumn;
Saha, Ritwik;
Bandyopadhyay, Sanghamitra;
Sengupta, Debarka

Publication type:

Article

Staging System to Predict the Risk of Relapse in Multiple Myeloma Patients Undergoing Autologous Stem Cell Transplantation.

Published in:

Frontiers in Oncology, 2019, p. 1, doi. 10.3389/fonc.2019.00633

By:

Goswami, Chitrita;
Poonia, Sarita;
Kumar, Lalit;
Sengupta, Debarka

Publication type:

Article

AutoImpute: Autoencoder based imputation of single-cell RNA-seq data.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34688-x

By:

Talwar, Divyanshu;
Mongia, Aanchal;
Sengupta, Debarka;
Majumdar, Angshul

Publication type:

Article

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1801, doi. 10.1093/nar/gkab018

By:

Chawla, Smriti;
Samydurai, Sudhagar;
Kong, Say Li;
Wu, Zhengwei;
Wang, Zhenxun;
TAM, Wai Leong;
Sengupta, Debarka;
Kumar, Vibhor

Publication type:

Article

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e13, doi. 10.1093/nar/gkaa1138

By:

Chawla, Smriti;
Samydurai, Sudhagar;
Kong, Say Li;
Wu, Zhengwei;
Wang, Zhenxun;
TAM, Wai Leong;
Sengupta, Debarka;
Kumar, Vibhor

Publication type:

Article

CellAtlasSearch: a scalable search engine for single cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. W1, p. W141, doi. 10.1093/nar/gky421

By:

Srivastava, Divyanshu;
Iyer, Arvind;
Kumar, Vibhor;
Sengupta, Debarka

Publication type:

Article

dropClust: efficient clustering of ultra-large scRNA-seq data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gky007

By:

Sinha, Debajyoti;
Kumar, Akhilesh;
Kumar, Himanshu;
Bandyopadhyay, Sanghamitra;
Sengupta, Debarka

Publication type:

Article

Discovery of rare cells from voluminous single cell expression data.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07234-6

By:

Jindal, Aashi;
Gupta, Prashant;
Jayadeva;
Sengupta, Debarka

Publication type:

Article

Correction to: Molecular signature comprising 11 platelet-genes enables accurate blood-based diagnosis of NSCLC.

Published in:

2020

By:

Goswami, Chitrita;
Chawla, Smriti;
Thakral, Deepshi;
Pant, Himanshu;
Verma, Pramod;
Malik, Prabhat Singh;
Jayadeva;
Gupta, Ritu;
Ahuja, Gaurav;
Sengupta, Debarka

Publication type:

Correction Notice

Molecular signature comprising 11 platelet-genes enables accurate blood-based diagnosis of NSCLC.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-07147-z

By:

Goswami, Chitrita;
Chawla, Smriti;
Thakral, Deepshi;
Pant, Himanshu;
Verma, Pramod;
Malik, Prabhat Singh;
▮, Jayadeva;
Gupta, Ritu;
Ahuja, Gaurav;
Sengupta, Debarka

Publication type:

Article

Unraveling Coagulopathy in Acute Promyelocytic Leukemia: Insights from Single-Cell RNA Sequencing.

Published in:

Indian Journal of Medical & Paediatric Oncology, 2024, v. 45, p. S1, doi. 10.1055/s-0044-1788236

By:

Maity, Akash;
Poonia, Sarita;
Bhattacharya, Namrata;
Jain, Hasmukh;
Sengar, Manju;
Sengupta, Debarka;
Hasan, Syed K

Publication type:

Article

Microfluidic live tracking and transcriptomics of cancer-immune cell doublets link intercellular proximity and gene regulation.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-04205-y

By:

Flores, Bianca C. T.;
Chawla, Smriti;
Ma, Ning;
Sanada, Chad;
Kujur, Praveen Kumar;
Yeung, Rudy;
Bellon, Margot B.;
Hukari, Kyle;
Fowler, Brian;
Lynch, Mark;
Chinen, Ludmilla T. D.;
Ramalingam, Naveen;
Sengupta, Debarka;
Jeffrey, Stefanie S.

Publication type:

Article

McImpute: Matrix Completion Based Imputation for Single Cell RNA-seq Data.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00009

By:

Mongia, Aanchal;
Sengupta, Debarka;
Majumdar, Angshul

Publication type:

Article

Challenges and possible solutions for decoding extranasal olfactory receptors.

Published in:

FEBS Journal, 2021, v. 288, n. 14, p. 4230, doi. 10.1111/febs.15606

By:

Kalra, Siddhant;
Mittal, Aayushi;
Bajoria, Manisha;
Mishra, Tripti;
Maryam, Sidrah;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article