Works by Senabouth, Anne

Results: 13

ascend: R package for analysis of single-cell RNA-seq data.

Published in:

GigaScience, 2019, v. 8, n. 8, p. N.PAG, doi. 10.1093/gigascience/giz087

By:

Senabouth, Anne;
Lukowski, Samuel W;
Hernandez, Jose Alquicira;
Andersen, Stacey B;
Mei, Xin;
Nguyen, Quan H;
Powell, Joseph E

Publication type:

Article

Genotype-free demultiplexing of pooled single-cell RNA-seq.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1852-7

By:

Xu, Jun;
Falconer, Caitlin;
Nguyen, Quan;
Crawford, Joanna;
McKinnon, Brett D.;
Mortlock, Sally;
Senabouth, Anne;
Andersen, Stacey;
Chiu, Han Sheng;
Jiang, Longda;
Palpant, Nathan J.;
Yang, Jian;
Mueller, Michael D.;
Hewitt, Alex W.;
Pébay, Alice;
Montgomery, Grant W.;
Powell, Joseph E.;
Coin, Lachlan J.M

Publication type:

Article

Longitudinal expression profiling of CD4+ and CD8+ cells in patients with active to quiescent giant cell arteritis.

Published in:

BMC Medical Genomics, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s12920-018-0376-4

By:

De Smit, Elisabeth;
Lukowski, Samuel W.;
Anderson, Lisa;
Senabouth, Anne;
Dauyey, Kaisar;
Song, Sharon;
Wyse, Bruce;
Wheeler, Lawrie;
Chen, Christine Y.;
Cao, Khoa;
Wong Ten Yuen, Amy;
Shuey, Neil;
Clarke, Linda;
Lopez Sanchez, Isabel;
Hung, Sandy S. C.;
Pébay, Alice;
Mackey, David A.;
Brown, Matthew A.;
Hewitt, Alex W.;
Powell, Joseph E.

Publication type:

Article

High throughput functional profiling of genes at intraocular pressure loci reveals distinct networks for glaucoma.

Published in:

Human Molecular Genetics, 2024, v. 33, n. 9, p. 739, doi. 10.1093/hmg/ddae003

By:

Greatbatch, Connor J;
Lu, Qinyi;
Hung, Sandy;
Barnett, Alexander J;
Wing, Kristof;
Liang, Helena;
Han, Xikun;
Zhou, Tiger;
Siggs, Owen M;
Mackey, David A;
Cook, Anthony L;
Senabouth, Anne;
Liu, Guei-Sheung;
Craig, Jamie E;
MacGregor, Stuart;
Powell, Joseph E;
Hewitt, Alex W

Publication type:

Article

scGPS: Determining Cell States and Global Fate Potential of Subpopulations.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.666771

By:

Thompson, Michael;
Matsumoto, Maika;
Ma, Tianqi;
Senabouth, Anne;
Palpant, Nathan J.;
Powell, Joseph E.;
Nguyen, Quan

Publication type:

Article

Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31707-4

By:

Senabouth, Anne;
Daniszewski, Maciej;
Lidgerwood, Grace E.;
Liang, Helena H.;
Hernández, Damián;
Mirzaei, Mehdi;
Keenan, Stacey N.;
Zhang, Ran;
Han, Xikun;
Neavin, Drew;
Rooney, Louise;
Lopez Sanchez, Maria Isabel G.;
Gulluyan, Lerna;
Paulo, Joao A.;
Clarke, Linda;
Kearns, Lisa S.;
Gnanasambandapillai, Vikkitharan;
Chan, Chia-Ling;
Nguyen, Uyen;
Steinmann, Angela M.

Publication type:

Article

Single‐cell analysis of lymphatic endothelial cell fate specification and differentiation during zebrafish development.

Published in:

EMBO Journal, 2023, v. 42, n. 11, p. 1, doi. 10.15252/embj.2022112590

By:

Grimm, Lin;
Mason, Elizabeth;
Yu, Hujun;
Dudczig, Stefanie;
Panara, Virginia;
Chen, Tyrone;
Bower, Neil I;
Paterson, Scott;
Rondon Galeano, Maria;
Kobayashi, Sakurako;
Senabouth, Anne;
Lagendijk, Anne K;
Powell, Joseph;
Smith, Kelly A;
Okuda, Kazuhide S;
Koltowska, Katarzyna;
Hogan, Benjamin M

Publication type:

Article

A single‐cell transcriptome atlas of the adult human retina.

Published in:

EMBO Journal, 2019, v. 38, n. 18, p. N.PAG, doi. 10.15252/embj.2018100811

By:

Lukowski, Samuel W;
Lo, Camden Y;
Sharov, Alexei A;
Nguyen, Quan;
Fang, Lyujie;
Hung, Sandy SC;
Zhu, Ling;
Zhang, Ting;
Grünert, Ulrike;
Nguyen, Tu;
Senabouth, Anne;
Jabbari, Jafar S;
Welby, Emily;
Sowden, Jane C;
Waugh, Hayley S;
Mackey, Adrienne;
Pollock, Graeme;
Lamb, Trevor D;
Wang, Peng‐Yuan;
Hewitt, Alex W

Publication type:

Article

Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02293-3

By:

Neavin, Drew;
Nguyen, Quan;
Daniszewski, Maciej S.;
Liang, Helena H.;
Chiu, Han Sheng;
Wee, Yong Kiat;
Senabouth, Anne;
Lukowski, Samuel W.;
Crombie, Duncan E.;
Lidgerwood, Grace E.;
Hernández, Damián;
Vickers, James C.;
Cook, Anthony L.;
Palpant, Nathan J.;
Pébay, Alice;
Hewitt, Alex W.;
Powell, Joseph E.

Publication type:

Article

The relationship between adrenocortical candidate gene expression and clinical response to hydrocortisone in patients with septic shock.

Published in:

Intensive Care Medicine, 2021, v. 47, n. 9, p. 974, doi. 10.1007/s00134-021-06464-5

By:

Cohen, Jeremy;
Blumenthal, Antje;
Cuellar-Partida, Gabriel;
Evans, David M.;
Finfer, Simon;
Li, Qiang;
Ljungberg, Johanna;
Myburgh, John;
Peach, Elizabeth;
Powell, Joseph;
Rajbhandari, Dorrilyn;
Rhodes, Andrew;
Senabouth, Anne;
Venkatesh, Balasubramanian

Publication type:

Article

Correction: Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.

Published in:

PLoS Genetics, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pgen.1009858

By:

Currant, Hannah;
Hysi, Pirro;
Fitzgerald, Tomas W.;
Gharahkhani, Puya;
Bonnemaijer, Pieter W. M.;
Senabouth, Anne;
Hewitt, Alex W.;
Atan, Denize;
Aung, Tin;
Charng, Jason;
Choquet, Hélène;
Craig, Jamie;
Khaw, Peng T.;
Klaver, Caroline C. W.;
Kubo, Michiaki;
Ong, Jue-Sheng;
Pasquale, Louis R.;
Reisman, Charles A.;
Daniszewski, Maciej;
Powell, Joseph E.

Publication type:

Article

Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.

Published in:

PLoS Genetics, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pgen.1009497

By:

Currant, Hannah;
Hysi, Pirro;
Fitzgerald, Tomas W.;
Gharahkhani, Puya;
Bonnemaijer, Pieter W. M.;
Senabouth, Anne;
Hewitt, Alex W.;
Atan, Denize;
Aung, Tin;
Charng, Jason;
Choquet, Hélène;
Craig, Jamie;
Khaw, Peng T.;
Klaver, Caroline C. W.;
Kubo, Michiaki;
Ong, Jue-Sheng;
Pasquale, Louis R.;
Reisman, Charles A.;
Daniszewski, Maciej;
Powell, Joseph E.

Publication type:

Article

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03224-8

By:

Neavin, Drew;
Senabouth, Anne;
Arora, Himanshi;
Lee, Jimmy Tsz Hang;
Ripoll-Cladellas, Aida;
Franke, Lude;
Prabhakar, Shyam;
Ye, Chun Jimmie;
McCarthy, Davis J.;
Melé, Marta;
Hemberg, Martin;
Powell, Joseph E.

Publication type:

Article