Works by Sekiguchi, Yuji

Results: 43

Molecular detection and direct enumeration of methanogenic Archaea and methanotrophic Bacteria in domestic solid waste landfill soils.

Published in:

Biotechnology Letters, 2003, v. 25, n. 18, p. 1563, doi. 10.1023/A:1025461915495

By:

Chen, Ann-Cheng;
Ueda, Kumiko;
Sekiguchi, Yuji;
Ohashi, Akiyoshi;
Harada, Hideki

Publication type:

Article

Archaeal community compositions at different depths (up to 30 m) of a municipal solid waste landfill in Taiwan as revealed by 16S rDNA cloning analyses.

Published in:

Biotechnology Letters, 2003, v. 25, n. 9, p. 719, doi. 10.1023/A:1023458631699

By:

Chen, Ann-Cheng;
Imachi, Hiroyuki;
Sekiguchi, Yuji;
Ohashi, Akiyoshi;
Harada, Hideki

Publication type:

Article

Phylogenetic Analysis and Fluorescence In Situ Hybridization Detection of Archaeal and Bacterial Endosymbionts in the Anaerobic Ciliate Trimyema Compressum.

Published in:

Microbial Ecology, 2007, v. 54, n. 4, p. 627, doi. 10.1007/s00248-007-9218-1

By:

Naoya Shinzato;
Ichiro Watanabe;
Xian-Ying Meng;
Sekiguchi, Yuji;
Tamaki, Hideyuki;
Matsui, Toru;
Kamagata, Yoichi

Publication type:

Article

Isolation and identification of Wickerhamiella tropicalis from blood culture by MALDI-MS.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 01, doi. 10.3389/fcimb.2024.1361432

By:

Satomi Takei;
Kanae Teramoto;
Junya Fujimura;
Megumi Fujiwara;
Mai Suzuki;
Yukiko Fukui;
Yuji Sekiguchi;
Takaaki Kawakami;
Masayoshi Chonan;
Mitsuru Wakita;
Yuki Horiuchi;
Takashi Miida;
Toshio Naito;
Teruo Kirikae;
Tatsuya Tada;
Yoko Tabe

Publication type:

Article

Elucidating colorectal cancer-associated bacteria through profiling of minimally perturbed tissue-associated microbiota.

Published in:

Frontiers in Cellular & Infection Microbiology, 2023, p. 01, doi. 10.3389/fcimb.2023.1216024

By:

Hironori Fukuoka;
Tourlousse, Dieter M.;
Akiko Ohashi;
Shinsuke Suzuki;
Kazuya Nakagawa;
Mayumi Ozawa;
Atsushi Ishibe;
Itaru Endo;
Yuji Sekiguchi

Publication type:

Article

Oligonucleotide primers, probes and molecular methods for the environmental monitoring of methanogenic archaea.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 5, p. 585, doi. 10.1111/j.1751-7915.2010.00239.x

By:

Narihiro, Takashi;
Sekiguchi, Yuji

Publication type:

Article

Sulphur metabolism in colon cancer tissues: a case report and literature review.

Published in:

Journal of International Medical Research, 2021, v. 49, n. 11, p. 1, doi. 10.1177/03000605211059936

By:

Hironori Fukuoka;
Tomohiro Andou;
Takeo Moriya;
Koji Narita;
Ken Kasahara;
Daisuke Miura;
Yuji Sekiguchi;
Shinsuke Suzuki;
Kazuya Nakagawa;
Mayumi Ozawa;
Atsushi Ishibe;
Itaru Endo

Publication type:

Article

PBDE: Structure-Activity Studies for the Inhibition of Hepatitis C Virus NS3 Helicase.

Published in:

Molecules, 2014, v. 19, n. 4, p. 4006, doi. 10.3390/molecules19044006

By:

Salam, Kazi Abdus;
Atsushi Furuta;
Naohiro Noda;
Satoshi Tsuneda;
Yuji Sekiguchi;
Atsuya Yamashita;
Kohji Moriishi;
Masamichi Nakakoshi;
Hidenori Tani;
Sona Rani Roy;
Junichi Tanaka;
Masayoshi Tsubuki;
Nobuyoshi Akimitsu

Publication type:

Article

Staurosporine induces lamellipodial widening in locomoting fish keratocytes by abolishing the gradient from radial extension of leading edge.

Published in:

Biophysics (13492942), 2011, v. 7, p. 69, doi. 10.2142/biophysics.7.69

By:

Mizuno, Takafumi;
Sekiguchi, Yuji

Publication type:

Article

An Expanded Genomic Representation of the Phylum Cyanobacteria.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 5, p. 1031, doi. 10.1093/gbe/evu073

By:

Soo, Rochelle M.;
Skennerton, Connor T.;
Sekiguchi, Yuji;
Imelfort, Michael;
Paech, Samuel J.;
Dennis, Paul G.;
Steen, Jason A.;
Parks, Donovan H.;
Tyson, Gene W.;
Hugenholtz, Philip

Publication type:

Article

Microbial diversity and methanogenic potential in a high temperature natural gas field in Japan.

Published in:

2008

By:

Mochimaru, Hanako;
Yoshioka, Hideyoshi;
Tamaki, Hideyuki;
Nakamura, Kohei;
Kaneko, Nobuyuki;
Sakata, Susumu;
Imachi, Hiroyuki;
Sekiguchi, Yuji;
Uchiyama, Hiroo;
Kamagata, Yoichi

Publication type:

Correction Notice

Microbial diversity and methanogenic potential in a high temperature natural gas field in Japan.

Published in:

Extremophiles, 2007, v. 11, n. 3, p. 453, doi. 10.1007/s00792-006-0056-8

By:

Mochimaru, Hanako;
Yoshioka, Hideyoshi;
Tamaki, Hideyuki;
Nakamura, Kohei;
Kaneko, Nobuyuki;
Sakata, Susumu;
Imachi, Hiroyuki;
Sekiguchi, Yuji;
Uchiyama, Hiroo;
Kamagata, Yoichi

Publication type:

Article

A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03096-4

By:

Sekiguchi, Yuji;
Teramoto, Kanae;
Tourlousse, Dieter M.;
Ohashi, Akiko;
Hamajima, Mayu;
Miura, Daisuke;
Yamada, Yoshihiro;
Iwamoto, Shinichi;
Tanaka, Koichi

Publication type:

Article

Characterization of MazF-Mediated Sequence-Specific RNA Cleavage in Pseudomonas putida Using Massive Parallel Sequencing.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149494

By:

Miyamoto, Tatsuki;
Kato, Yuka;
Sekiguchi, Yuji;
Tsuneda, Satoshi;
Noda, Naohiro

Publication type:

Article

Psammaplin A inhibits hepatitis C virus NS3 helicase.

Published in:

Journal of Natural Medicines, 2013, v. 67, n. 4, p. 765, doi. 10.1007/s11418-013-0742-7

By:

Salam, Kazi;
Furuta, Atsushi;
Noda, Naohiro;
Tsuneda, Satoshi;
Sekiguchi, Yuji;
Yamashita, Atsuya;
Moriishi, Kohji;
Nakakoshi, Masamichi;
Tsubuki, Masayoshi;
Tani, Hidenori;
Tanaka, Junichi;
Akimitsu, Nobuyoshi

Publication type:

Article

Microbial population and functional dynamics associated with surface potential and carbon metabolism.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 5, p. 963, doi. 10.1038/ismej.2013.217

By:

Ishii, Shun'ichi;
Suzuki, Shino;
Norden-Krichmar, Trina M;
Phan, Tony;
Wanger, Greg;
Nealson, Kenneth H;
Sekiguchi, Yuji;
Gorby, Yuri A;
Bretschger, Orianna

Publication type:

Article

Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 5, p. 522, doi. 10.1038/ismej.2009.4

By:

Narihiro, Takashi;
Terada, Takeshi;
Ohashi, Akiko;
Jer-Horng Wu;
Wen-Tso Liu;
Araki, Nobuo;
Kamagata, Yoichi;
Nakamura, Kazunori;
Sekiguchi, Yuji

Publication type:

Article

Characterization of filamentous bacteria, belonging to candidate phylum KSB3, that are associated with bulking in methanogenic granular sludges.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2007, v. 1, n. 3, p. 246, doi. 10.1038/ismej.2007.28

By:

Yamada, Takeshi;
Yamauchi, Toshihiro;
Shiraishi, Koji;
Hugenholtz, Philip;
Ohashi, Akiyoshi;
Harada, Hideki;
Kamagata, Yoichi;
Nakamura, Kazunori;
Sekiguchi, Yuji

Publication type:

Article

Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 4, p. 915, doi. 10.1093/molbev/msv281

By:

Yun Kit Yeoh;
Yuji Sekiguchi;
Parks, Donovan H.;
Hugenholtz, Philip

Publication type:

Article

Development of certified reference material NMIJ CRM 6205-a for the validation of DNA quantification methods: accurate mass concentrations of 600-bp DNA solutions having artificial sequences.

Published in:

Analytical & Bioanalytical Chemistry, 2019, v. 411, n. 23, p. 6091, doi. 10.1007/s00216-019-01992-y

By:

Shibayama, Sachie;
Fujii, Shin-ichiro;
Inagaki, Kazumi;
Yamazaki, Taichi;
Yoshioka, Mariko;
Matsukura, Satoko;
Sasaki, Akira;
Suyama, Tetsushi;
Noda, Naohiro;
Sekiguchi, Yuji;
Takatsu, Akiko

Publication type:

Article

Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01869

By:

Soe Myat Thandar;
Norisuke Ushiki;
Hirotsugu Fujitani;
Yuji Sekiguchi;
Satoshi Tsuneda;
Schramm, Andreas;
Hidetoshi Urakawa

Publication type:

Article

Characterisation of bacteria representing a novel Nitrosomonas clade: Physiology, genomics and distribution of missing ammonia oxidizer.

Published in:

Environmental Microbiology Reports, 2023, v. 15, n. 5, p. 404, doi. 10.1111/1758-2229.13158

By:

Kikuchi, Shuta;
Fujitani, Hirotsugu;
Ishii, Kento;
Isshiki, Rino;
Sekiguchi, Yuji;
Tsuneda, Satoshi

Publication type:

Article

JAK2V617F mutation status and allele burden in classical Ph-negative myeloproliferative neoplasms in Japan.

Published in:

International Journal of Hematology, 2014, v. 99, n. 5, p. 625, doi. 10.1007/s12185-014-1567-1

By:

Edahiro, Yoko;
Morishita, Soji;
Takahashi, Kochi;
Hironaka, Yumi;
Yahata, Yuriko;
Sunami, Yoshitaka;
Shirane, Shuichi;
Tsutsui, Miyuki;
Noguchi, Masaaki;
Koike, Michiaki;
Imai, Kiyotoshi;
Kirito, Keita;
Noda, Naohiro;
Sekiguchi, Yuji;
Tsuneda, Satoshi;
Ohsaka, Akimichi;
Araki, Marito;
Komatsu, Norio

Publication type:

Article

Long-Lived Charge-Separated State Generated in a Ferrocene–meso,meso-Linked Porphyrin Trimer–Fullerene Pentad with a High Quantum Yield.

Published in:

Chemistry - A European Journal, 2004, v. 10, n. 13, p. 3184, doi. 10.1002/chem.200305308

By:

Hiroshi Imahori;
Yuji Sekiguchi;
Yukiyasu Kashiwagi;
Tohru Sato;
Yasuyuki Araki;
Osamu Ito;
Hiroko Yamada;
Shunichi Fukuzumi

Publication type:

Article

Diversity and geochemical community assembly processes of the living rare biosphere in a sand-and-gravel aquifer ecosystem in the Midwestern United States.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-49996-z

By:

Yamamoto, Kyosuke;
Hackley, Keith C.;
Kelly, Walton R.;
Panno, Samuel V.;
Sekiguchi, Yuji;
Sanford, Robert A.;
Liu, Wen-Tso;
Kamagata, Yoichi;
Tamaki, Hideyuki

Publication type:

Article

Identification and Biochemical Characterization of Halisulfate 3 and Suvanine as Novel Inhibitors of Hepatitis C Virus NS3 Helicase from a Marine Sponge.

Published in:

Marine Drugs, 2014, v. 12, n. 1, p. 462, doi. 10.3390/md12010462

By:

Atsushi Furuta;
Salam, Kazi Abdus;
Hermawan, Idam;
Nobuyoshi Akimitsu;
Junichi Tanaka;
Hidenori Tani;
Yamashita, Atsuya;
Kohji Moriishi;
Masamichi Nakakoshi;
Masayoshi Tsubuki;
Poh Wee Peng;
Youichi Suzuki;
Naoki Yamamoto;
Yuji Sekiguchi;
Satoshi Tsuneda;
Naohiro Noda

Publication type:

Article

Physiological and genomic characterization of a new 'Candidatus Nitrotoga' isolate.

Published in:

Environmental Microbiology, 2020, v. 22, n. 6, p. 2365, doi. 10.1111/1462-2920.15015

By:

Ishii, Kento;
Fujitani, Hirotsugu;
Sekiguchi, Yuji;
Tsuneda, Satoshi

Publication type:

Article

The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow.

Published in:

Environmental Microbiology, 2015, v. 17, n. 12, p. 4861, doi. 10.1111/1462-2920.12444

By:

Nobu, Masaru K.;
Narihiro, Takashi;
Hideyuki, Tamaki;
Qiu, Yan ‐ Ling;
Sekiguchi, Yuji;
Woyke, Tanja;
Goodwin, Lynne;
Davenport, Karen W.;
Kamagata, Yoichi;
Liu, Wen ‐ Tso

Publication type:

Article

Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: a demonstration using a high sensitivity cultivation-based approach.

Published in:

Environmental Microbiology, 2012, v. 14, n. 9, p. 2511, doi. 10.1111/j.1462-2920.2012.02815.x

By:

Watanabe, Keiji;
Komatsu, Nobuyuki;
Kitamura, Tatsumi;
Ishii, Yuichi;
Park, Ho-Dong;
Miyata, Ryo;
Noda, Naohiro;
Sekiguchi, Yuji;
Satou, Takayuki;
Watanabe, Mirai;
Yamamura, Shigeki;
Imai, Akio;
Hayashi, Seiji

Publication type:

Article

Effect of gelling agent on colony formation in solid cultivation of microbial community in lake sediment.

Published in:

Environmental Microbiology, 2009, v. 11, n. 7, p. 1827, doi. 10.1111/j.1462-2920.2009.01907.x

By:

Tamaki, Hideyuki;
Hanada, Satoshi;
Sekiguchi, Yuji;
Tanaka, Yasuhiro;
Kamagata, Yoichi

Publication type:

Article

Identification of Hydroxyanthraquinones as Novel Inhibitors of Hepatitis C Virus NS3 Helicase.

Published in:

International Journal of Molecular Sciences, 2015, v. 16, n. 8, p. 18439, doi. 10.3390/ijms160818439

By:

Atsushi Furuta;
Masayoshi Tsubuki;
Miduki Endoh;
Tatsuki Miyamoto;
Junichi Tanaka;
Kazi Abdus Salam;
Nobuyoshi Akimitsu;
Hidenori Tani;
Atsuya Yamashita;
Kohji Moriishi;
Masamichi Nakakoshi;
Yuji Sekiguchi;
Satoshi Tsuneda;
Naohiro Noda

Publication type:

Article

Multi-Omics Analysis to Generate Hypotheses for Mild Health Problems in Monkeys.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 10, p. 701, doi. 10.3390/metabo11100701

By:

Hamano, Fumie;
Tokuoka, Suzumi M.;
Ishibashi, Megumi;
Yokoi, Yasuto;
Tourlousse, Dieter M.;
Kita, Yoshihiro;
Sekiguchi, Yuji;
Yasui, Hiroyuki;
Shimizu, Takao;
Oda, Yoshiya

Publication type:

Article

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw984

By:

Tourlousse, Dieter M.;
Yoshiike, Satowa;
Akiko Ohashi;
Satoko Matsukura;
Noda, Naohiro;
Yuji Sekiguchi

Publication type:

Article

Methanogen Diversity in Deep Subsurface Gas-Associated Water at the Minami-Kanto Gas Field in Japan.

Published in:

Geomicrobiology Journal, 2007, v. 24, n. 2, p. 93, doi. 10.1080/01490450701266571

By:

Mochimaru, Hanako;
Uchiyama, Hiroo;
Yoshioka, Hideyoshi;
Imachi, Hiroyuki;
Hoaki, Toshihiro;
Tamaki, Hideyuki;
Nakamura, Kohei;
Sekiguchi, Yuji;
Kamagata, Yoichi

Publication type:

Article

Enhanced electrode-reducing rate during the enrichment process in an air-cathode microbial fuel cell.

Published in:

Applied Microbiology & Biotechnology, 2012, v. 94, n. 4, p. 1087, doi. 10.1007/s00253-011-3844-8

By:

Ishii, Shun'ichi;
Logan, Bruce;
Sekiguchi, Yuji

Publication type:

Article

Detection of <i>MPL</i>W515L/K Mutations and Determination of Allele Frequencies with a Single-Tube PCR Assay.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104958

By:

Takei, Hiraku;
Morishita, Soji;
Araki, Marito;
Edahiro, Yoko;
Sunami, Yoshitaka;
Hironaka, Yumi;
Noda, Naohiro;
Sekiguchi, Yuji;
Tsuneda, Satoshi;
Ohsaka, Akimichi;
Komatsu, Norio

Publication type:

Article

Inhibition of Both Protease and Helicase Activities of Hepatitis C Virus NS3 by an Ethyl Acetate Extract of Marine Sponge Amphimedon sp.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0048685

By:

Fujimoto, Yuusuke;
Salam, Kazi Abdus;
Furuta, Atsushi;
Matsuda, Yasuyoshi;
Fujita, Osamu;
Tani, Hidenori;
Ikeda, Masanori;
Kato, Nobuyuki;
Sakamoto, Naoya;
Maekawa, Shinya;
Enomoto, Nobuyuki;
de Voogd, Nicole J.;
Nakakoshi, Masamichi;
Tsubuki, Masayoshi;
Sekiguchi, Yuji;
Tsuneda, Satoshi;
Akimitsu, Nobuyoshi;
Noda, Naohiro;
Yamashita, Atsuya;
Tanaka, Junichi

Publication type:

Article

Functionally Stable and Phylogenetically Diverse Microbial Enrichments from Microbial Fuel Cells during Wastewater Treatment.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030495

By:

Ishii, Shun'ichi;
Suzuki, Shino;
Norden-Krichmar, Trina M.;
Nealson, Kenneth H.;
Sekiguchi, Yuji;
Gorby, Yuri A.;
Bretschger, Orianna

Publication type:

Article

Pelotomaculum terephthalicum sp. nov. and Pelotomaculum isophthalicum sp. nov.: two anaerobic bacteria that degrade phthalate isomers in syntrophic association with hydrogenotrophic methanogens.

Published in:

Archives of Microbiology, 2006, v. 185, n. 3, p. 172, doi. 10.1007/s00203-005-0081-5

By:

Yan-Ling Qiu;
Sekiguchi, Yuji;
Hanada, Satoshi;
Imachi, Hiroyuki;
I-Cheng Tseng;
Cheng, Sheng-Shung;
Ohashi, Akiyoshi;
Harada, Hideki;
Kamagata, Yoichi

Publication type:

Article

Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing.

Published in:

2003

By:

Qiu, Yan-Ling;
Sekiguchi, Yuji;
Imachi, Hiroyuki;
Kamagata, Yoichi;
Tseng, I-Cheng;
Cheng, Sheng-Shung;
Ohashi, Akiyoshi;
Harada, Hideki

Publication type:

Erratum

Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing.

Published in:

Archives of Microbiology, 2003, v. 179, n. 4, p. 242, doi. 10.1007/s00203-003-0521-z

By:

Yan-Ling Qiu;
Sekiguchi, Yuji;
Imachi, Hiroyuki;
Kamagata, Yoichi;
I-Cheng Tseng;
Sheng-Shung Cheng;
Ohashi, Akiyoshi;
Harada, Hideki

Publication type:

Article

Cholesterol sulfate as a potential inhibitor of hepatitis C virus NS3 helicase.

Published in:

Journal of Enzyme Inhibition & Medicinal Chemistry, 2014, v. 29, n. 2, p. 223, doi. 10.3109/14756366.2013.766607

By:

Furuta, Atsushi;
Salam, Kazi Abdus;
Akimitsu, Nobuyoshi;
Tanaka, Junichi;
Tani, Hidenori;
Yamashita, Atsuya;
Moriishi, Kohji;
Nakakoshi, Masamichi;
Tsubuki, Masayoshi;
Sekiguchi, Yuji;
Tsuneda, Satoshi;
Noda, Naohiro

Publication type:

Article

Identification of Mycobacterium abscessus using the peaks of ribosomal protein L29, L30 and hemophore-related protein by MALDI-MS proteotyping.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-61549-7

By:

Takei, Satomi;
Teramoto, Kanae;
Sekiguchi, Yuji;
Ihara, Hiroaki;
Tohya, Mari;
Iwamoto, Shinichi;
Tanaka, Koichi;
Khasawneh, Abdullah;
Horiuchi, Yuki;
Misawa, Shigeki;
Naito, Toshio;
Kirikae, Teruo;
Tada, Tatsuya;
Tabe, Yoko

Publication type:

Article