Works matching AU Segal, Mark R

Results: 74

On E-values for tandem MS scoring schemes.

Published in:

2008

By:

Segal, Mark R.

Publication type:

Letter

Biological sequence classification utilizing positive and unlabeled data.

Published in:

Bioinformatics, 2008, v. 24, n. 9, p. 1198, doi. 10.1093/bioinformatics/btn089

By:

Yuanyuan Xiao;
Mark R. Segal

Publication type:

Article

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Published in:

Bioinformatics, 2007, v. 23, n. 12, p. 1459, doi. 10.1093/bioinformatics/btm131

By:

Yuanyuan Xiao;
Mark R. Segal;
Y.H. Yang;
Ru-Fang Yeh

Publication type:

Article

Antiinflammatory Effects of Budesonide in Human Fetal Lung.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2016, v. 55, n. 5, p. 623, doi. 10.1165/rcmb.2016-0068OC

By:

Barrette, Anne Marie;
Roberts, Jessica K.;
Chapin, Cheryl;
Egan, Edmund A.;
Segal, Mark R.;
Oses-Prieto, Juan A.;
Chand, Shreya;
Burlingame, Alma L.;
Ballard, Philip L.

Publication type:

Article

A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 630, doi. 10.1186/1471-2164-13-630

By:

Capurso, Daniel;
Hao Xiong;
Segal, Mark R.

Publication type:

Article

Assessment of differential gene expression in human peripheral nerve injury.

Published in:

BMC Genomics, 2002, v. 3, p. 28, doi. 10.1186/1471-2164-3-28

By:

Yuanyuan Xiao;
Segal, Mark R.;
Rabert, Douglas;
Ahn, Andrew H.;
Anand, Praveen;
Sangameswaran, Lakshmi;
Donglei Hu;
Hunt, C. Anthony

Publication type:

Article

Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05170-x

By:

Olshen, Adam B.;
Segal, Mark R.

Publication type:

Article

Genomic anatomy of the specific reciprocal translocation t(15;17) in acute promyelocytic leukemia.

Published in:

Genes, Chromosomes & Cancer, 2003, v. 36, n. 2, p. 175, doi. 10.1002/gcc.10154

By:

Reiter, Andreas;
Sauβele, Susanne;
Grimwade, David;
Wiemels, Joseph L.;
Segal, Mark R.;
Lafage-Pochitaloff, Marina;
Walz, Christoph;
Weisser, Andreas;
Hochhaus, Andreas;
Willer, Andreas;
Reichert, Anja;
Büchner, Thomas;
Lengfelder, Eva;
Hehlmann, Rüdiger;
Cross, Nicholas C.P.

Publication type:

Article

Derivation of Multivariate Syndromic Outcome Metrics for Consistent Testing across Multiple Models of Cervical Spinal Cord Injury in Rats.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059712

By:

Ferguson, Adam R.;
Irvine, Karen-Amanda;
Gensel, John C.;
Nielson, Jessica L.;
Lin, Amity;
Ly, Johnathan;
Segal, Mark R.;
Ratan, Rajiv R.;
Bresnahan, Jacqueline C.;
Beattie, Michael S.

Publication type:

Article

Sequence-Based Classification Using Discriminatory Motif Feature Selection.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027382

By:

Hao Xiong;
Capurso, Daniel;
Sen, Śaunak;
Segal, Mark R.

Publication type:

Article

Lactobacillus casei Abundance Is Associated with Profound Shifts in the Infant Gut Microbiome.

Published in:

PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008745

By:

Cox, Michael J.;
Huang, Yvonne J.;
Fujimura, Kei E.;
Liu, Jane T.;
McKean, Michelle;
Boushey, Homer A.;
Segal, Mark R.;
Brodie, Eoin L.;
Cabana, Michael D.;
Lynch, Susan V.

Publication type:

Article

Extending the elements of tree-structured regression.

Published in:

1995

By:

Segal, Mark R;
Segal, M R

Publication type:

journal article

Identification of Discrete Prognostic Groups in Ewing Sarcoma.

Published in:

2016

By:

Karski, Erin E.;
McIlvaine, Elizabeth;
Segal, Mark R.;
Krailo, Mark;
Grier, Holcombe E.;
Granowetter, Linda;
Womer, Richard B.;
Meyers, Paul A.;
Felgenhauer, Judy;
Marina, Neyssa;
DuBois, Steven G.

Publication type:

journal article

Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients With Stable Coronary Heart Disease.

Published in:

2016

By:

Ganz, Peter;
Heidecker, Bettina;
Hveem, Kristian;
Jonasson, Christian;
Kato, Shintaro;
Segal, Mark R.;
Sterling, David G.;
Williams, Stephen A.

Publication type:

journal article

Maternal smoking during pregnancy and birth outcomes with weight gain adjustments via varying-coefficient models.

Published in:

1997

By:

Segal, Mark R.;
Wight, Suzanne;
Hanrahan, John P.;
Tager, Ira B.;
Segal, M R;
Wight, S;
Hanrahan, J P;
Tager, I B

Publication type:

journal article

Design effects for binary regression models fitted to dependent data.

Published in:

Statistics in Medicine, 1993, v. 12, n. 13, p. 1259, doi. 10.1002/sim.4780121307

By:

Neuhaus, John M.;
Segal, Mark R.

Publication type:

Article

Design effects for binary regression models fitted to dependent data.

Published in:

Statistics in Medicine, 1993, v. 12, n. 11, p. 1259, doi. 10.1002/sim.4780121107

By:

Neuhaus, John M.;
Segal, Mark R.

Publication type:

Article

A comparison of estimated proportional hazards models and regression trees.

Published in:

Statistics in Medicine, 1989, v. 8, n. 5, p. 539, doi. 10.1002/sim.4780080503

By:

Segal, Mark R.;
Bloch, Daniel A.

Publication type:

Article

Smoothing methods for epidemiologic analysis.

Published in:

Statistics in Medicine, 1988, v. 7, n. 5, p. 601, doi. 10.1002/sim.4780070507

By:

Segal, Mark R.;
Weiss, Scott T.;
Speizer, Frank E.;
Tager, Ira B.

Publication type:

Article

The Relationship Between Self-Rated Health and Mortality in Older Black and White Americans.

Published in:

Journal of the American Geriatrics Society, 2007, v. 55, n. 10, p. 1624, doi. 10.1111/j.1532-5415.2007.01360.x

By:

Lee, Sei J.;
Moody-Ayers, Sandra Y.;
Landefeld, C. Seth;
Walter, Louise C.;
Lindquist, Karla;
Segal, Mark R.;
Covinsky, Kenneth E.

Publication type:

Article

Immune Response and Mortality Risk Relate to Distinct Lung Microbiomes in Patients with HIV and Pneumonia.

Published in:

2017

By:

Shenoy, Meera K.;
Iwai, Shoko;
Lin, Din L.;
Worodria, William;
Ayakaka, Irene;
Byanyima, Patrick;
Kaswabuli, Sylvia;
Fong, Serena;
Stone, Stephen;
Chang, Emily;
Davis, J. Lucian;
Faruqi, Ali Ahmad;
Segal, Mark R.;
Huang, Laurence;
Lynch, Susan V.

Publication type:

journal article

Reconstruction of 3D genome architecture via a two-stage algorithm.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0799-2

By:

Segal, Mark R.;
Bengtsson, Henrik L.

Publication type:

Article

Analysis of a Splice Array Experiment Elucidates Roles of Chromatin Elongation Factor Spt4-5 in Splicing.

Published in:

PLoS Computational Biology, 2005, v. 1, n. 4, p. 276, doi. 10.1371/journal.pcbi.0010039

By:

Yuanyuan Xiao;
Yang, Yee H.;
Burckin, Todd A.;
Shiue, Lily;
Hartzog, Grant A.;
Segal, Mark R.;
Bourne, Philip E.

Publication type:

Article

Querying Genomic Databases: Refining the Connectivity Map.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 2, p. 1, doi. 10.2202/1544-6115.1715

By:

Segal, Mark R.;
Hao Xiong;
Bengtsson, Henrik;
Bourgon, Richard;
Gentleman, Robert

Publication type:

Article

Re-Cracking the Nucleosome Positioning Code.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2008, v. 7, n. 1, p. 1, doi. 10.2202/1544-6115.1367

By:

Segal, Mark R.

Publication type:

Article

Validation in Genomics: CpG Island Methylation Revisited.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2006, v. 5, n. 1, p. 1, doi. 10.2202/1544-6115.1256

By:

Segal, Mark R.

Publication type:

Article

Prediction of Genomewide Conserved Epitope Profiles of HIV-1: Classifier Choice and Peptide Representation.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2005, v. 4, n. 1, p. 1, doi. 10.2202/1544-6115.1158

By:

Yuanyuan Xiao;
Segal, Mark R.

Publication type:

Article

Stepwise Normalization of Two-Channel Spotted Microarrays.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2005, v. 4, n. 1, p. 1, doi. 10.2202/1544-6115.1117

By:

Yuanyuan Xiao;
Segal, Mark R.;
Yee Hwa Yang

Publication type:

Article

Relating HIV-1 Sequence Variation to Replication Capacity via Trees and Forests.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2004, v. 3, n. 1, p. 1, doi. 10.2202/1544-6115.1031

By:

Segal, Mark R.;
Barbour, Jason D.;
Grant, Robert M.

Publication type:

Article

Assessing chromatin relocalization in 3D using the patient rule induction method.

Published in:

Biostatistics, 2023, v. 24, n. 3, p. 618, doi. 10.1093/biostatistics/kxab033

By:

Segal, Mark R

Publication type:

Article

Principal curve approaches for inferring 3D chromatin architecture.

Published in:

2022

By:

Tuzhilina, Elena;
Hastie, Trevor J;
Segal, Mark R

Publication type:

journal article

Analytical and Biological Variability of a Commercial Modified Aptamer Assay in Plasma Samples of Patients with Chronic Kidney Disease.

Published in:

Journal of Applied Laboratory Medicine, 2023, v. 8, n. 3, p. 491, doi. 10.1093/jalm/jfac145

By:

Dubin, Ruth F;
Deo, Rajat;
Ren, Yue;
Lee, Hongzhe;
Shou, Haochang;
Feldman, Harold;
Kimmel, Paul;
Waikar, Sushrut S;
Rhee, Eugene P;
Tin, Adrienne;
Chen, Jingsha;
Coresh, Joseph;
Go, Alan S;
Kelly, Tanika;
Rao, Paduranga S;
Chen, Teresa K;
Segal, Mark R;
Ganz, Peter

Publication type:

Article

Frailty Among Patients Receiving Hemodialysis: Evolution of Components and Associations With Mortality.

Published in:

2019

By:

Johansen, Kirsten L;
Delgado, Cynthia;
Kaysen, George A;
Chertow, Glenn M;
Chiang, Janet;
Dalrymple, Lorien S;
Segal, Mark R;
Grimes, Barbara A

Publication type:

journal article

Traffic-Related Air Pollution and All-Cause Mortality during Tuberculosis Treatment in California.

Published in:

Environmental Health Perspectives, 2017, v. 125, n. 9, p. 1, doi. 10.1289/EHP1699

By:

Blount, Robert J.;
Pascopella, Lisa;
Catanzaro, Donald G.;
Barry, Pennan M.;
English, Paul B.;
Segal, Mark R.;
Flood, Jennifer;
Meltzer, Dan;
Jones, Brenda;
Balmes, John;
Nahid, Payam

Publication type:

Article

Outcome-related metabolomic patterns from <sup>1</sup>H/<sup>31</sup>P NMR after mild hypothermia treatments of oxygen-glucose deprivation in a neonatal brain slice model of asphyxia.

Published in:

Journal of Cerebral Blood Flow & Metabolism, 2011, v. 31, n. 2, p. 547, doi. 10.1038/jcbfm.2010.125

By:

Liu, Jia;
Litt, Lawrence;
Segal, Mark R;
Kelly, Mark J S;
Yoshihara, Hikari A I;
James, Thomas L

Publication type:

Article

The relationship of nasal disorders to lower respiratory tract symptoms and illness in a random sample of children.

Published in:

Pediatric Pulmonology, 1992, v. 14, n. 2, p. 91, doi. 10.1002/ppul.1950140206

By:

Barr, Marisa B.;
Weiss, Scott T.;
Segal, Mark R.;
Tager, Ira B.;
Speizer, Frank E.

Publication type:

Article

Being 'underpowered' does not make a study unethical.

Published in:

Statistics in Medicine, 2012, v. 31, n. 29, p. 4138, doi. 10.1002/sim.5451

By:

Bacchetti, Peter;
McCulloch, Charles;
Segal, Mark R.

Publication type:

Article

Distance-based assessment of the localization of functional annotations in 3D genome reconstructions.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-992

By:

Capurso, Daniel;
Segal, Mark R.

Publication type:

Article

Improved accuracy assessment for 3D genome reconstructions.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2214-2

By:

Segal, Mark R.;
Bengtsson, Henrik L.

Publication type:

Article

Identification of Yeast Transcriptional Regulation Networks Using Multivariate Random Forests.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000414

By:

Yuanyuan Xiao;
Segal, Mark R.

Publication type:

Article

Reproducibility of 3D chromatin configuration reconstructions.

Published in:

Biostatistics, 2014, v. 15, n. 3, p. 442, doi. 10.1093/biostatistics/kxu003

By:

Segal, Mark R.;
Xiong, Hao;
Capurso, Daniel;
Vazquez, Mariel;
Arsuaga, Javier

Publication type:

Article

Clustering with exclusion zones: genomic applications.

Published in:

Biostatistics, 2011, v. 12, n. 2, p. 234, doi. 10.1093/biostatistics/kxq066

By:

Segal, Mark R.;
Xiao, Yuanyuan;
Huffer, Fred W.

Publication type:

Article

Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited.

Published in:

Biostatistics, 2006, v. 7, n. 2, p. 268, doi. 10.1093/biostatistics/kxj006

By:

Mark R. Segal

Publication type:

Article

Residual-based tree-structured survival analysis.

Published in:

2002

By:

Keleş, Sündüz;
Segal, Mark R.;
Keleş, Sündüz

Publication type:

journal article

Indoor Air Pollution and Susceptibility to Tuberculosis Infection in Urban Vietnamese Children.

Published in:

2021

By:

Blount, Robert J.;
Ha Phan;
Trang Trinh;
Hai Dang;
Merrifield, Cindy;
Zavala, Michael;
Zabner, Joseph;
Comellas, Alejandro P.;
Stapleton, Emma M.;
Segal, Mark R.;
Balmes, John;
Nhung, Nguyen Viet;
Nahid, Payam;
Phan, Ha;
Trinh, Trang;
Dang, Hai

Publication type:

journal article

Clustering of Translocation Breakpoints.

Published in:

Journal of the American Statistical Association, 2002, v. 97, n. 457, p. 66, doi. 10.1198/016214502753479239

By:

Segal, Mark R.;
Wiemels, Joseph L.

Publication type:

Article

Comment.

Published in:

Journal of the American Statistical Association, 1992, v. 87, n. 419, p. 628, doi. 10.1080/01621459.1992.10475260

By:

Taylor, Jeremy M. G.;
Segal, Mark R.

Publication type:

Article

Empirical Comparison of Approaches to Forming Strata.

Published in:

Journal of the American Statistical Association, 1989, v. 84, n. 408, p. 897, doi. 10.2307/2290064

By:

Bloch, Daniel A.;
Segal, Mark R.

Publication type:

Article

Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death.

Published in:

Nature, 2004, v. 431, n. 7010, p. 805, doi. 10.1038/nature02998

By:

Arrasate, Montserrat;
Mitra, Siddhartha;
Schweitzer, Erik S.;
Segal, Mark R.;
Finkbeiner, Steven

Publication type:

Article

Can 3D diploid genome reconstruction from unphased Hi-C data be salvaged?

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 2, p. 1, doi. 10.1093/nargab/lqac038

By:

Segal, Mark R

Publication type:

Article