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An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-022-35713-4
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- Publication type:
- Article
Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.77195
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- Publication type:
- Article
Genomic Evidence of In-Flight SARS-CoV-2 Transmission, India to Australia, April 2021.
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- Emerging Infectious Diseases, 2022, v. 28, n. 7, p. 1527, doi. 10.3201/eid2807.212466
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- Publication type:
- Article
Second SARS‐CoV‐2 infections twelve months after initial infections in Australia, confirmed by genomic analysis.
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- Medical Journal of Australia, 2022, v. 216, n. 4, p. 199, doi. 10.5694/mja2.51352
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- Publication type:
- Article
AusTrakka: Fast-tracking nationalized genomics surveillance in response to the COVID-19 pandemic.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28529-9
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- Publication type:
- Article
Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28156-4
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- Publication type:
- Article
Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac033
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- Publication type:
- Article
Daptomycin Resistance Occurs Predominantly in vanA -Type Vancomycin-Resistant Enterococcus faecium in Australasia and Is Associated With Heterogeneous and Novel Mutations.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.749935
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- Publication type:
- Article
Viral Genomics to Inform Infection-control Response in Occupational Coronavirus Disease 2019 (COVID-19) Transmission.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, n. 7, p. e1881, doi. 10.1093/cid/ciaa1385
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- Publication type:
- Article
COVID-19: Integrating genomic and epidemiological data to inform public health interventions and policy in Tasmania, Australia.
- Published in:
- Western Pacific Surveillance & Response Journal, 2021, v. 12, n. 4, p. 93, doi. 10.5365/wpsar.2021.12.4.878
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- Publication type:
- Article
Defective Severe Acute Respiratory Syndrome Coronavirus 2 Immune Responses in an Immunocompromised Individual With Prolonged Viral Replication.
- Published in:
- 2021
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- Publication type:
- Case Study
Case Report: Confirmation by Metagenomic Sequencing of Visceral Leishmaniasis in an Immunosuppressed Returned Traveler.
- Published in:
- American Journal of Tropical Medicine & Hygiene, 2020, v. 103, n. 5, p. 1930, doi. 10.4269/ajtmh.19-0841
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- Publication type:
- Article
Tracking the COVID-19 pandemic in Australia using genomics.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18314-x
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- Publication type:
- Article
Incursions of Candida auris into Australia, 2018.
- Published in:
- 2020
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- Publication type:
- journal article
Isolation and rapid sharing of the 2019 novel coronavirus (SARS-CoV-2) from the first patient diagnosed with COVID-19 in Australia.
- Published in:
- 2020
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- Publication type:
- journal article
Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.
- Published in:
- Clinical Infectious Diseases, 2019, v. 69, n. 9, p. 1535, doi. 10.1093/cid/ciz005
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- Publication type:
- Article
Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.
- Published in:
- 2019
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- Publication type:
- journal article
Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12053-4
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- Publication type:
- Article
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software.
- Published in:
- GigaScience, 2019, v. 8, n. 9, p. N.PAG, doi. 10.1093/gigascience/giz109
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- Publication type:
- Article
Zinc-binding to the cytoplasmic PAS domain regulates the essential WalK histidine kinase of Staphylococcus aureus.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10932-4
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- Publication type:
- Article
The ΦBT1 large serine recombinase catalyzes DNA integration at pseudo-attB sites in the genus Nocardia.
- Published in:
- PeerJ, 2019, p. 1, doi. 10.7717/peerj.4784
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- Publication type:
- Article
Biosynthesis and Ether‐Bridge Formation in Nargenicin Macrolides.
- Published in:
- Angewandte Chemie, 2019, v. 131, n. 12, p. 4036, doi. 10.1002/ange.201900290
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- Publication type:
- Article
Biosynthesis and Ether‐Bridge Formation in Nargenicin Macrolides.
- Published in:
- Angewandte Chemie International Edition, 2019, v. 58, n. 12, p. 3996, doi. 10.1002/anie.201900290
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- Publication type:
- Article
The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study.
- Published in:
- 2018
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- Publication type:
- journal article
Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq).
- Published in:
- Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0572-z
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- Publication type:
- Article
Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia.
- Published in:
- Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0574-x
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- Publication type:
- Article
Increasing tolerance of hospital Enterococcus faecium to handwash alcohols.
- Published in:
- Science Translational Medicine, 2018, v. 10, n. 452, p. 1, doi. 10.1126/scitranslmed.aar6115
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- Publication type:
- Article
The First Isolation and Whole Genome Sequencing of Murray Valley Encephalitis Virus from Cerebrospinal Fluid of a Patient with Encephalitis.
- Published in:
- Viruses (1999-4915), 2018, v. 10, n. 6, p. 319, doi. 10.3390/v10060319
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- Publication type:
- Article
Whole genome analysis reveals the diversity and evolutionary relationships between necrotic enteritis-causing strains of <italic>Clostridium perfringens</italic>.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4771-1
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- Publication type:
- Article
Human blood MAIT cell subsets defined using MR1 tetramers.
- Published in:
- Immunology & Cell Biology, 2018, v. 96, n. 5, p. 507, doi. 10.1111/imcb.12021
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- Publication type:
- Article
The ΦBT1 large serine recombinase catalyzes DNA integration at pseudo-attB sites in the genus Nocardia.
- Published in:
- PeerJ, 2018, v. 6, p. 1, doi. 10.7717/peerj.4784
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- Publication type:
- Article
Vancomycin-resistant Enterococcus faecium sequence type 796 - rapid international dissemination of a new epidemic clone.
- Published in:
- Antimicrobial Resistance & Infection Control, 2018, v. 7, n. 1, p. 1, doi. 10.1186/s13756-018-0335-z
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- Publication type:
- Article
Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand.
- Published in:
- 2018
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- Publication type:
- journal article
Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak.
- Published in:
- PeerJ, 2018, p. 1, doi. 10.7717/peerj.4210
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- Publication type:
- Article
Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings.
- Published in:
- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01906
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- Publication type:
- Article
Multiple Introductions and Recent Spread of the Emerging Human Pathogen Mycobacterium ulcerans across Africa.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 3, p. 414, doi. 10.1093/gbe/evx003
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- Publication type:
- Article
Comment on: Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.
- Published in:
- 2017
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- Publication type:
- letter
Correspondence: Spontaneous secondary mutations confound analysis of the essential two-component system WalKR in Staphylococcus aureus.
- Published in:
- Nature Communications, 2017, v. 8, n. 2, p. 14403, doi. 10.1038/ncomms14403
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- Publication type:
- Article
Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors.
- Published in:
- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00048
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- Publication type:
- Article
Genomic Insights into a Sustained National Outbreak of Yersinia pseudotubercuiosis.
- Published in:
- Genome Biology & Evolution, 2016, v. 8, n. 12, p. 3806, doi. 10.1093/gbe/evw285
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- Publication type:
- Article
Emergence of endemic MLST non-typeable vancomycin-resistant Enterococcus faecium.
- Published in:
- 2016
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- Publication type:
- journal article
Sharing Is Caring: International Sharing of Data Enhances Genomic Surveillance of Listeria monocytogenes.
- Published in:
- 2016
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- Publication type:
- Letter to the Editor
Genomic resources and draft assemblies of the human and porcine varieties of scabies mites, Sarcoptes scabiei var. hominis and var. suis.
- Published in:
- GigaScience, 2016, v. 5, p. 10, doi. 10.1186/s13742-016-0129-2
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- Publication type:
- Article
Mitochondrial Genome Sequence of the Scabies Mite Provides Insight into the Genetic Diversity of Individual Scabies Infections.
- Published in:
- PLoS Neglected Tropical Diseases, 2016, v. 10, n. 2, p. 1, doi. 10.1371/journal.pntd.0004384
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- Publication type:
- Article
A Genomic Approach to Resolving Relapse versus Reinfection among Four Cases of Buruli Ulcer.
- Published in:
- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 12, p. 1, doi. 10.1371/journal.pntd.0004158
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- Publication type:
- Article
Comparative Genomic Analysis of Asian Haemorrhagic Septicaemia-Associated Strains of Pasteurella multocida Identifies More than 90 Haemorrhagic Septicaemia-Specific Genes.
- Published in:
- PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0130296
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- Publication type:
- Article
Correction: Whole Genome Comparisons Suggest Random Distribution of Mycobacterium ulcerans Genotypes in a Buruli Ulcer Endemic Region of Ghana.
- Published in:
- 2015
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- Publication type:
- Correction Notice
Natural Variation Identifies ICARUS1, a Universal Gene Required for Cell Proliferation and Growth at High Temperatures in Arabidopsis thaliana.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pgen.1005085
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- Publication type:
- Article
Correction: Whole Genome Comparisons Suggest Random Distribution of Mycobacterium ulcerans Genotypes in a Buruli Ulcer Endemic Region of Ghana.
- Published in:
- 2015
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- Publication type:
- Correction Notice
Whole Genome Comparisons Suggest Random Distribution of Mycobacterium ulcerans Genotypes in a Buruli Ulcer Endemic Region of Ghana.
- Published in:
- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 3, p. 1, doi. 10.1371/journal.pntd.0003681
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- Publication type:
- Article