Works matching AU Sedlazeck, Fritz J

Results: 71

GenomeScope: fast reference-free genome profiling from short reads.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2202, doi. 10.1093/bioinformatics/btx153

By:

Vurture, Gregory W.;
Sedlazeck, Fritz J.;
Nattestad, Maria;
Underwood, Charles J.;
Han Fang;
Gurtowski, James;
Schatz, Michael C.

Publication type:

Article

NextGenMap: fast and accurate read mapping in highly polymorphic genomes.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2790, doi. 10.1093/bioinformatics/btt468

By:

Sedlazeck, Fritz J.;
Rescheneder, Philipp;
von Haeseler, Arndt

Publication type:

Article

StratoMod: predicting sequencing and variant calling errors with interpretable machine learning.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06981-1

By:

Dwarshuis, Nathan;
Tonner, Peter;
Olson, Nathan D.;
Sedlazeck, Fritz J.;
Wagner, Justin;
Zook, Justin M.

Publication type:

Article

StratoMod: predicting sequencing and variant calling errors with interpretable machine learning.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06981-1

By:

Dwarshuis, Nathan;
Tonner, Peter;
Olson, Nathan D.;
Sedlazeck, Fritz J.;
Wagner, Justin;
Zook, Justin M.

Publication type:

Article

Single-cell somatic copy number variants in brain using different amplification methods and reference genomes.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06940-w

By:

Kalef-Ezra, Ester;
Turan, Zeliha Gozde;
Perez-Rodriguez, Diego;
Bomann, Ida;
Behera, Sairam;
Morley, Caoimhe;
Scholz, Sonja W.;
Jaunmuktane, Zane;
Demeulemeester, Jonas;
Sedlazeck, Fritz J.;
Proukakis, Christos

Publication type:

Article

The GIAB genomic stratifications resource for human reference genomes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53260-y

By:

Dwarshuis, Nathan;
Kalra, Divya;
McDaniel, Jennifer;
Sanio, Philippe;
Alvarez Jerez, Pilar;
Jadhav, Bharati;
Huang, Wenyu;
Mondal, Rajarshi;
Busby, Ben;
Olson, Nathan D.;
Sedlazeck, Fritz J.;
Wagner, Justin;
Majidian, Sina;
Zook, Justin M.

Publication type:

Article

MethPhaser: methylation-based long-read haplotype phasing of human genomes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49588-0

By:

Fu, Yilei;
Aganezov, Sergey;
Mahmoud, Medhat;
Beaulaurier, John;
Juul, Sissel;
Treangen, Todd J.;
Sedlazeck, Fritz J.

Publication type:

Article

MethPhaser: methylation-based long-read haplotype phasing of human genomes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49588-0

By:

Fu, Yilei;
Aganezov, Sergey;
Mahmoud, Medhat;
Beaulaurier, John;
Juul, Sissel;
Treangen, Todd J.;
Sedlazeck, Fritz J.

Publication type:

Article

De Novo Genome Assembly for the Coppery Titi Monkey (Plecturocebus cupreus): An Emerging Nonhuman Primate Model for Behavioral Research.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 5, p. 1, doi. 10.1093/gbe/evae108

By:

Pfeifer, Susanne P;
Baxter, Alexander;
Savidge, Logan E;
Sedlazeck, Fritz J;
Bales, Karen L

Publication type:

Article

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05438-2

By:

McDaniel, Jennifer H.;
Patel, Vaidehi;
Olson, Nathan D.;
He, Hua-Jun;
He, Zhiyong;
Cole, Kenneth D.;
Gooden, Alexander A.;
Schmitt, Anthony;
Sikkink, Kristin;
Sedlazeck, Fritz J.;
Doddapaneni, Harsha;
Jhangiani, Shalini N.;
Muzny, Donna M.;
Gingras, Marie-Claude;
Mehta, Heer;
Behera, Sairam;
Paulin, Luis F.;
Hastie, Alex R.;
Yu, Hung-Chun;
Weigman, Victor

Publication type:

Article

Frequent spontaneous structural rearrangements promote rapid genome diversification in a Brassica napus F1 generation.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.1057953

By:

Orantes-Bonilla, Mauricio;
Makhoul, Manar;
Lee, HueyTyng;
Chawla, Harmeet Singh;
Vollrath, Paul;
Langstroff, Anna;
Sedlazeck, Fritz J.;
Jun Zou;
Snowdon, Rod J.

Publication type:

Article

FixItFelix: improving genomic analysis by fixing reference errors.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02863-7

By:

Behera, Sairam;
LeFaive, Jonathon;
Orchard, Peter;
Mahmoud, Medhat;
Paulin, Luis F.;
Farek, Jesse;
Soto, Daniela C.;
Parker, Stephen C. J.;
Smith, Albert V.;
Dennis, Megan Y.;
Zook, Justin M.;
Sedlazeck, Fritz J.

Publication type:

Article

Truvari: refined structural variant comparison preserves allelic diversity.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02840-6

By:

English, Adam C.;
Menon, Vipin K.;
Gibbs, Richard A.;
Metcalf, Ginger A.;
Sedlazeck, Fritz J.

Publication type:

Article

Towards accurate and reliable resolution of structural variants for clinical diagnosis.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8

By:

Liu, Zhichao;
Roberts, Ruth;
Mercer, Timothy R.;
Xu, Joshua;
Sedlazeck, Fritz J.;
Tong, Weida

Publication type:

Article

Author Correction: Towards accurate and reliable resolution of structural variants for clinical diagnosis.

Published in:

2022

By:

Liu, Zhichao;
Roberts, Ruth;
Mercer, Timothy R.;
Xu, Joshua;
Sedlazeck, Fritz J.;
Tong, Weida

Publication type:

Correction Notice

Multiple genome alignment in the telomere-to-telomere assembly era.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02735-6

By:

Kille, Bryce;
Balaji, Advait;
Sedlazeck, Fritz J.;
Nute, Michael;
Treangen, Todd J.

Publication type:

Article

Towards accurate and reliable resolution of structural variants for clinical diagnosis.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8

By:

Liu, Zhichao;
Roberts, Ruth;
Mercer, Timothy R.;
Xu, Joshua;
Sedlazeck, Fritz J.;
Tong, Weida

Publication type:

Article

Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02569-8

By:

Pan, Bohu;
Ren, Luyao;
Onuchic, Vitor;
Guan, Meijian;
Kusko, Rebecca;
Bruinsma, Steve;
Trigg, Len;
Scherer, Andreas;
Ning, Baitang;
Zhang, Chaoyang;
Glidewell-Kenney, Christine;
Xiao, Chunlin;
Donaldson, Eric;
Sedlazeck, Fritz J.;
Schroth, Gary;
Yavas, Gokhan;
Grunenwald, Haiying;
Chen, Haodong;
Meinholz, Heather;
Meehan, Joe

Publication type:

Article

Hidden biases in germline structural variant detection.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02558-x

By:

Khayat, Michael M.;
Sahraeian, Sayed Mohammad Ebrahim;
Zarate, Samantha;
Carroll, Andrew;
Hong, Huixiao;
Pan, Bohu;
Shi, Leming;
Gibbs, Richard A.;
Mohiyuddin, Marghoob;
Zheng, Yuanting;
Sedlazeck, Fritz J.

Publication type:

Article

PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02486-w

By:

Mahmoud, Medhat;
Doddapaneni, Harshavardhan;
Timp, Winston;
Sedlazeck, Fritz J.

Publication type:

Article

Comprehensive genome analysis and variant detection at scale using DRAGEN.

Published in:

Nature Biotechnology, 2025, v. 43, n. 7, p. 1177, doi. 10.1038/s41587-024-02382-1

By:

Behera, Sairam;
Catreux, Severine;
Rossi, Massimiliano;
Truong, Sean;
Huang, Zhuoyi;
Ruehle, Michael;
Visvanath, Arun;
Parnaby, Gavin;
Roddey, Cooper;
Onuchic, Vitor;
Finocchio, Andrea;
Cameron, Daniel L.;
English, Adam;
Mehtalia, Shyamal;
Han, James;
Mehio, Rami;
Sedlazeck, Fritz J.

Publication type:

Article

Analysis and benchmarking of small and large genomic variants across tandem repeats.

Published in:

Nature Biotechnology, 2025, v. 43, n. 3, p. 431, doi. 10.1038/s41587-024-02225-z

By:

English, Adam C.;
Dolzhenko, Egor;
Ziaei Jam, Helyaneh;
McKenzie, Sean K.;
Olson, Nathan D.;
De Coster, Wouter;
Park, Jonghun;
Gu, Bida;
Wagner, Justin;
Eberle, Michael A.;
Gymrek, Melissa;
Chaisson, Mark J. P.;
Zook, Justin M.;
Sedlazeck, Fritz J.

Publication type:

Article

Publisher Correction: Detection of mosaic and population-level structural variants with Sniffles2.

Published in:

2024

By:

Smolka, Moritz;
Paulin, Luis F.;
Grochowski, Christopher M.;
Horner, Dominic W.;
Mahmoud, Medhat;
Behera, Sairam;
Kalef-Ezra, Ester;
Gandhi, Mira;
Hong, Karl;
Pehlivan, Davut;
Scholz, Sonja W.;
Carvalho, Claudia M. B.;
Proukakis, Christos;
Sedlazeck, Fritz J.

Publication type:

Correction Notice

Detection of mosaic and population-level structural variants with Sniffles2.

Published in:

Nature Biotechnology, 2024, v. 42, n. 10, p. 1571, doi. 10.1038/s41587-023-02024-y

By:

Smolka, Moritz;
Paulin, Luis F.;
Grochowski, Christopher M.;
Horner, Dominic W.;
Mahmoud, Medhat;
Behera, Sairam;
Kalef-Ezra, Ester;
Gandhi, Mira;
Hong, Karl;
Pehlivan, Davut;
Scholz, Sonja W.;
Carvalho, Claudia M. B.;
Proukakis, Christos;
Sedlazeck, Fritz J.

Publication type:

Article

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree.

Published in:

Nature Biotechnology, 2024, v. 42, n. 1, p. 139, doi. 10.1038/s41587-023-01753-4

By:

Dylus, David;
Altenhoff, Adrian;
Majidian, Sina;
Sedlazeck, Fritz J.;
Dessimoz, Christophe

Publication type:

Article

Chromosome-scale, haplotype-resolved assembly of human genomes.

Published in:

Nature Biotechnology, 2021, v. 39, n. 3, p. 309, doi. 10.1038/s41587-020-0711-0

By:

Garg, Shilpa;
Fungtammasan, Arkarachai;
Carroll, Andrew;
Chou, Mike;
Schmitt, Anthony;
Zhou, Xiang;
Mac, Stephen;
Peluso, Paul;
Hatas, Emily;
Ghurye, Jay;
Maguire, Jared;
Mahmoud, Medhat;
Cheng, Haoyu;
Heller, David;
Zook, Justin M.;
Moemke, Tobias;
Marschall, Tobias;
Sedlazeck, Fritz J.;
Aach, John;
Chin, Chen-Shan

Publication type:

Article

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.

Published in:

Nature Biotechnology, 2020, v. 38, n. 9, p. 1044, doi. 10.1038/s41587-020-0503-6

By:

Shafin, Kishwar;
Pesout, Trevor;
Lorig-Roach, Ryan;
Haukness, Marina;
Olsen, Hugh E.;
Bosworth, Colleen;
Armstrong, Joel;
Tigyi, Kristof;
Maurer, Nicholas;
Koren, Sergey;
Sedlazeck, Fritz J.;
Marschall, Tobias;
Mayes, Simon;
Costa, Vania;
Zook, Justin M.;
Liu, Kelvin J.;
Kilburn, Duncan;
Sorensen, Melanie;
Munson, Katy M.;
Vollger, Mitchell R.

Publication type:

Article

Targeted nanopore sequencing with Cas9-guided adapter ligation.

Published in:

Nature Biotechnology, 2020, v. 38, n. 4, p. 433, doi. 10.1038/s41587-020-0407-5

By:

Gilpatrick, Timothy;
Lee, Isac;
Graham, James E.;
Raimondeau, Etienne;
Bowen, Rebecca;
Heron, Andrew;
Downs, Bradley;
Sukumar, Saraswati;
Sedlazeck, Fritz J;
Timp, Winston

Publication type:

Article

Unveiling novel genetic variants in 370 challenging medically relevant genes using the long read sequencing data of 41 samples from 19 global populations.

Published in:

Molecular Genetics & Genomics, 2024, v. 299, n. 1, p. 1, doi. 10.1007/s00438-024-02158-x

By:

Ji, Yanfeng;
Zhao, Junfan;
Gong, Jiao;
Sedlazeck, Fritz J.;
Fan, Shaohua

Publication type:

Article

Reply to: Is Gauchian genotyping of GBA1 variants reliable?

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08060-5

By:

Toffoli, Marco;
Schapira, Anthony H. V.;
Sedlazeck, Fritz J.;
Proukakis, Christos

Publication type:

Article

Characterizing a complex CT-rich haplotype in intron 4 of SNCA using large-scale targeted amplicon long-read sequencing.

Published in:

NPJ Parkinson's Disease, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41531-024-00749-4

By:

Alvarez Jerez, Pilar;
Daida, Kensuke;
Grenn, Francis P.;
Malik, Laksh;
Miano-Burkhardt, Abigail;
Makarious, Mary B.;
Ding, Jinhui;
Gibbs, J. Raphael;
Moore, Anni;
Reed, Xylena;
Nalls, Mike A.;
Shah, Syed;
Mahmoud, Medhat;
Sedlazeck, Fritz J.;
Dolzhenko, Egor;
Park, Morgan;
Iwaki, Hirotaka;
Casey, Bradford;
Ryten, Mina;
Blauwendraat, Cornelis

Publication type:

Article

Profiling complex repeat expansions in RFC1 in Parkinson's disease.

Published in:

NPJ Parkinson's Disease, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41531-024-00723-0

By:

Alvarez Jerez, Pilar;
Daida, Kensuke;
Miano-Burkhardt, Abigail;
Iwaki, Hirotaka;
Malik, Laksh;
Cogan, Guillaume;
Makarious, Mary B.;
Sullivan, Roisin;
Vandrovcova, Jana;
Ding, Jinhui;
Gibbs, J. Raphael;
Markham, Androo;
Nalls, Mike A.;
Kesharwani, Rupesh K.;
Sedlazeck, Fritz J.;
Casey, Bradford;
Hardy, John;
Houlden, Henry;
Blauwendraat, Cornelis;
Singleton, Andrew B.

Publication type:

Article

xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments.

Published in:

GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giac125

By:

Farek, Jesse;
Hughes, Daniel;
Salerno, William;
Zhu, Yiming;
Pisupati, Aishwarya;
Mansfield, Adam;
Krasheninina, Olga;
English, Adam C;
Metcalf, Ginger;
Boerwinkle, Eric;
Muzny, Donna M;
Gibbs, Richard;
Khan, Ziad;
Sedlazeck, Fritz J

Publication type:

Article

Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac039

By:

Harris, R Alan;
Raveendran, Muthuswamy;
Lyfoung, Dustin T;
Sedlazeck, Fritz J;
Mahmoud, Medhat;
Prall, Trent M;
Karl, Julie A;
Doddapaneni, Harshavardhan;
Meng, Qingchang;
Han, Yi;
Muzny, Donna;
Wiseman, Roger W;
O'Connor, David H;
Rogers, Jeffrey

Publication type:

Article

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.

Published in:

GigaScience, 2021, v. 10, n. 9, p. 1, doi. 10.1093/gigascience/giab063

By:

Fu, Yilei;
Mahmoud, Medhat;
Muraliraman, Viginesh Vaibhav;
Sedlazeck, Fritz J;
Treangen, Todd J

Publication type:

Article

Parliament2: Accurate structural variant calling at scale.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa145

By:

Zarate, Samantha;
Carroll, Andrew;
Mahmoud, Medhat;
Krasheninina, Olga;
Jun, Goo;
Salerno, William J;
Schatz, Michael C;
Boerwinkle, Eric;
Gibbs, Richard A;
Sedlazeck, Fritz J

Publication type:

Article

PhaseME: Automatic rapid assessment of phasing quality and phasing improvement.

Published in:

GigaScience, 2020, v. 9, n. 7, p. 1, doi. 10.1093/gigascience/giaa078

By:

Majidian, Sina;
Sedlazeck, Fritz J

Publication type:

Article

Evaluation of computational genotyping of structural variation for clinical diagnoses.

Published in:

GigaScience, 2019, v. 8, n. 9, p. N.PAG, doi. 10.1093/gigascience/giz110

By:

Chander, Varuna;
Gibbs, Richard A;
Sedlazeck, Fritz J

Publication type:

Article

Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study.

Published in:

BMC Veterinary Research, 2015, v. 11, n. 1, p. 1, doi. 10.1186/s12917-015-0378-9

By:

Krunic, Milica;
Ertl, Reinhard;
Hagen, Benedikt;
Sedlazeck, Fritz J.;
Hofmann-Lehmann, Regina;
von Haeseler, Arndt;
Klein, Dieter

Publication type:

Article

Comprehensive short and long read sequencing analysis for the Gaucher and Parkinson's disease-associated GBA gene.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03610-7

By:

Toffoli, Marco;
Chen, Xiao;
Sedlazeck, Fritz J.;
Lee, Chiao-Yin;
Mullin, Stephen;
Higgins, Abigail;
Koletsi, Sofia;
Garcia-Segura, Monica Emili;
Sammler, Esther;
Scholz, Sonja W.;
Schapira, Anthony H. V.;
Eberle, Michael A.;
Proukakis, Christos

Publication type:

Article

High resolution copy number inference in cancer using short-molecule nanopore sequencing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e124, doi. 10.1093/nar/gkab812

By:

Baslan, Timour;
Kovaka, Sam;
Sedlazeck, Fritz J;
Zhang, Yanming;
Wappel, Robert;
Tian, Sha;
Lowe, Scott W;
Goodwin, Sara;
Schatz, Michael C

Publication type:

Article

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12155, doi. 10.1093/nar/gku844

By:

Vesely, Cornelia;
Tauber, Stefanie;
Sedlazeck, Fritz J.;
Tajaddod, Mansoureh;
Haeseler, Arndt von;
Jantsch, Michael F.

Publication type:

Article

Global DNA methylation differences involving germline structural variation impact gene expression in pediatric brain tumors.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60110-y

By:

Chen, Fengju;
Zhang, Yiqun;
Li, Wei;
Sedlazeck, Fritz J.;
Shen, Lanlan;
Creighton, Chad J.

Publication type:

Article

The role of common structural variants in Alzheimer's disease.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, p. 1, doi. 10.1002/alz.092501

By:

Lee, Songmi;
Xia, Rui;
English, Adam C;
Peloso, Gina M.;
Bis, Josh;
Lin, Honghuang;
Choi, Seung Hoan;
Heard‐Costa, Nancy;
DeStefano, Anita L.;
Sedlazeck, Fritz J;
Fornage, Myriam

Publication type:

Article

Association Analysis of Common Structural Variants in the Alzheimer's Disease Sequencing Project.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.078821

By:

Lee, Songmi;
English, Adam C;
Xia, Rui;
Peloso, Gina M.;
Bis, Joshua C;
Lin, Honghuang;
Choi, Seung Hoan;
Heard‐Costa, Nancy;
DeStefano, Anita L.;
Sedlazeck, Fritz J;
Fornage, Myriam

Publication type:

Article

Association Analysis of Common Structural Variants in the Alzheimer's Disease Sequencing Project.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.078821

By:

Lee, Songmi;
English, Adam C;
Xia, Rui;
Peloso, Gina M.;
Bis, Joshua C;
Lin, Honghuang;
Choi, Seung Hoan;
Heard‐Costa, Nancy;
DeStefano, Anita L.;
Sedlazeck, Fritz J;
Fornage, Myriam

Publication type:

Article

Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with normal and delayed viral clearance.

Published in:

Virus Evolution, 2024, v. 10, n. 1, p. 1, doi. 10.1093/ve/vead086

By:

Avadhanula, Vasanthi;
Agustinho, Daniel Paiva;
Menon, Vipin Kumar;
Chemaly, Roy F;
Shah, Dimpy P;
Qin, Xiang;
Surathu, Anil;
Doddapaneni, Harshavardhan;
Muzny, Donna M;
Metcalf, Ginger A;
Cregeen, Sara Javornik;
Gibbs, Richard A;
Petrosino, Joseph F;
Sedlazeck, Fritz J;
Piedra, Pedro A

Publication type:

Article

A diploid assembly-based benchmark for variants in the major histocompatibility complex.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18564-9

By:

Chin, Chen-Shan;
Wagner, Justin;
Zeng, Qiandong;
Garrison, Erik;
Garg, Shilpa;
Fungtammasan, Arkarachai;
Rautiainen, Mikko;
Aganezov, Sergey;
Kirsche, Melanie;
Zarate, Samantha;
Schatz, Michael C.;
Xiao, Chunlin;
Rowell, William J.;
Markello, Charles;
Farek, Jesse;
Sedlazeck, Fritz J.;
Bansal, Vikas;
Yoo, Byunggil;
Miller, Neil;
Zhou, Xin

Publication type:

Article

Discovery and population genomics of structural variation in a songbird genus.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17195-4

By:

Weissensteiner, Matthias H.;
Bunikis, Ignas;
Catalán, Ana;
Francoijs, Kees-Jan;
Knief, Ulrich;
Heim, Wieland;
Peona, Valentina;
Pophaly, Saurabh D.;
Sedlazeck, Fritz J.;
Suh, Alexander;
Warmuth, Vera M.;
Wolf, Jochen B. W.

Publication type:

Article

A multi-task convolutional deep neural network for variant calling in single molecule sequencing.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09025-z

By:

Luo, Ruibang;
Sedlazeck, Fritz J.;
Lam, Tak-Wah;
Schatz, Michael C.

Publication type:

Article