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Exploring the Tiers of Rooted Phylogenetic Network Space Using Tail Moves.
- Published in:
- Bulletin of Mathematical Biology, 2018, v. 80, n. 8, p. 2177, doi. 10.1007/s11538-018-0452-0
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- Article
Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees.
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- Bulletin of Mathematical Biology, 2017, v. 79, n. 4, p. 920, doi. 10.1007/s11538-017-0260-y
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- Article
Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?
- Published in:
- Bulletin of Mathematical Biology, 2016, v. 78, n. 9, p. 1773, doi. 10.1007/s11538-016-0199-4
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- Publication type:
- Article
A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses.
- Published in:
- BMC Plant Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12870-018-1567-z
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- Publication type:
- Article
Efficient algorithms for reconciling gene trees and species networks via duplication and loss events.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S6
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- Article
Pangolin Genomes Offer Key Insights and Resources for the World's Most Trafficked Wild Mammals.
- Published in:
- Molecular Biology & Evolution, 2023, v. 40, n. 10, p. 1, doi. 10.1093/molbev/msad190
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- Publication type:
- Article
Corrigendum to: ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
- Published in:
- 2021
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- Publication type:
- Correction Notice
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
- Published in:
- Molecular Biology & Evolution, 2020, v. 37, n. 11, p. 3292, doi. 10.1093/molbev/msaa139
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- Publication type:
- Article
OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes.
- Published in:
- Molecular Biology & Evolution, 2019, v. 36, n. 4, p. 861, doi. 10.1093/molbev/msz015
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- Publication type:
- Article
OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals.
- Published in:
- Molecular Biology & Evolution, 2014, v. 31, n. 7, p. 1923, doi. 10.1093/molbev/msu132
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- Article
Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution.
- Published in:
- Molecular Biology & Evolution, 2013, v. 30, n. 8, p. 1745
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- Publication type:
- Article
OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D529, doi. 10.1093/nar/gkad834
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- Publication type:
- Article
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 5, p. 1312, doi. 10.1093/gbe/evx069
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- Publication type:
- Article
A Survey of Combinatorial Methods for Phylogenetic Networks.
- Published in:
- Genome Biology & Evolution, 2011, v. 3, p. 23, doi. 10.1093/gbe/evq077
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- Publication type:
- Article
Fast and accurate branch lengths estimation for phylogenomic trees.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-015-0821-8
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- Publication type:
- Article
A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0803-x
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- Publication type:
- Article
A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-127
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- Publication type:
- Article
Reconciliation-based detection of co-evolving gene families.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-332
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- Publication type:
- Article
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008380
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- Publication type:
- Article
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bateared fox.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.63167
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- Publication type:
- Article
The Effect of Copy Number Hemiplasy on Gene Family Evolution.
- Published in:
- Systematic Biology, 2024, v. 73, n. 2, p. 355, doi. 10.1093/sysbio/syae007
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- Article
Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies.
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- Systematic Biology, 2022, v. 71, n. 3, p. 526, doi. 10.1093/sysbio/syab063
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- Publication type:
- Article
The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution.
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- Systematic Biology, 2021, v. 70, n. 4, p. 822, doi. 10.1093/sysbio/syaa084
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- Publication type:
- Article
Whole Genome Shotgun Phylogenomics Resolves the Pattern and Timing of Swallowtail Butterfly Evolution.
- Published in:
- Systematic Biology, 2020, v. 69, n. 1, p. 38, doi. 10.1093/sysbio/syz030
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- Publication type:
- Article
Improved Maximum Parsimony Models for Phylogenetic Networks.
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- Systematic Biology, 2018, v. 67, n. 3, p. 518, doi. 10.1093/sysbio/syx094
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- Publication type:
- Article
Incomplete Lineage Sorting in Mammalian Phylogenomics.
- Published in:
- 2017
- By:
- Publication type:
- Opinion
On the consistency of orthology relationships.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 251, doi. 10.1186/s12859-016-1267-3
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- Publication type:
- Article
REPRESENTING A SET OF RECONCILIATIONS IN A COMPACT WAY.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1142/S0219720012500254
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- Publication type:
- Article
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004135
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- Publication type:
- Article
NetRAX: accurate and fast maximum likelihood phylogenetic network inference.
- Published in:
- Bioinformatics, 2022, v. 38, n. 15, p. 3725, doi. 10.1093/bioinformatics/btac396
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- Publication type:
- Article
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
- Published in:
- Bioinformatics, 2020, v. 36, n. 18, p. 4822, doi. 10.1093/bioinformatics/btaa615
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- Publication type:
- Article
Support Measures to Estimate the Reliability of Evolutionary Events Predicted by Reconciliation Methods.
- Published in:
- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0073667
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- Publication type:
- Article
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks.
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- Systematic Biology, 2012, v. 61, n. 6, p. 1061, doi. 10.1093/sysbio/sys062
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- Publication type:
- Article
PhySIC: A Veto Supertree Method with Desirable Properties.
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- Systematic Biology, 2007, v. 56, n. 5, p. 798, doi. 10.1080/10635150701639754
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- Publication type:
- Article
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
- Published in:
- Nucleic Acids Research, 2016, v. 44, p. D808, doi. 10.1093/nar/gkv966
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- Publication type:
- Article
The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference.
- Published in:
- Journal of Mathematical Biology, 2022, v. 85, n. 3, p. 1, doi. 10.1007/s00285-022-01786-4
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- Publication type:
- Article
Revisiting Shao and Sokal’s B2 index of phylogenetic balance.
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- Journal of Mathematical Biology, 2021, v. 83, n. 5, p. 1, doi. 10.1007/s00285-021-01662-7
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- Publication type:
- Article
Finding a most parsimonious or likely tree in a network with respect to an alignment.
- Published in:
- Journal of Mathematical Biology, 2019, v. 78, n. 1/2, p. 527, doi. 10.1007/s00285-018-1282-2
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- Publication type:
- Article
On the fixed parameter tractability of agreement-based phylogenetic distances.
- Published in:
- Journal of Mathematical Biology, 2017, v. 74, n. 1/2, p. 239, doi. 10.1007/s00285-016-1023-3
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- Publication type:
- Article
Inferring gene duplications, transfers and losses can be done in a discrete framework.
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- Journal of Mathematical Biology, 2016, v. 72, n. 7, p. 1811, doi. 10.1007/s00285-015-0930-z
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- Publication type:
- Article
Exploring the space of gene/species reconciliations with transfers.
- Published in:
- Journal of Mathematical Biology, 2015, v. 71, n. 5, p. 1179, doi. 10.1007/s00285-014-0851-2
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- Publication type:
- Article
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.
- Published in:
- Bioinformatics, 2017, v. 33, n. 7, p. 980, doi. 10.1093/bioinformatics/btw778
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- Publication type:
- Article
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.
- Published in:
- Bioinformatics, 2016, v. 32, n. 13, p. 2056, doi. 10.1093/bioinformatics/btw105
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- Publication type:
- Article
SylvX: a viewer for phylogenetic tree reconciliations.
- Published in:
- Bioinformatics, 2016, v. 32, n. 4, p. 608, doi. 10.1093/bioinformatics/btv625
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- Publication type:
- Article
Joint amalgamation of most parsimonious reconciled gene trees.
- Published in:
- Bioinformatics, 2015, v. 31, n. 6, p. 841, doi. 10.1093/bioinformatics/btu728
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- Publication type:
- Article
Fast computation of minimum hybridization networks.
- Published in:
- Bioinformatics, 2012, v. 28, n. 2, p. 191, doi. 10.1093/bioinformatics/btr618
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- Publication type:
- Article
Tanglegrams for rooted phylogenetic trees and networks.
- Published in:
- Bioinformatics, 2011, v. 27, n. 13, p. i248, doi. 10.1093/bioinformatics/btr210
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- Publication type:
- Article
Reconciling multiple genes trees via segmental duplications and losses.
- Published in:
- Algorithms for Molecular Biology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13015-019-0139-6
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- Publication type:
- Article
Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae).
- Published in:
- BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 181, doi. 10.1186/1471-2148-11-181
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- Publication type:
- Article
Correction: Generation of Binary Tree-Child phylogenetic networks.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 10, p. 1, doi. 10.1371/journal.pcbi.1007440
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- Publication type:
- Article