Works by Schweikert, Gabriele

Results: 13

Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK--driven lymphomagenesis.

Published in:

Life Science Alliance, 2021, v. 4, n. 2, p. 1, doi. 10.26508/lsa.202000794

By:

Redl, Elisa;
Sheibani-Tezerji, Raheleh;
de Jesus Cardona, Crhistian;
Hamminger, Patricia;
Timelthaler, Gerald;
Hassler, Melanie Rosalia;
Zrimšek, Maša;
Lagger, Sabine;
Dillinger, Thomas;
Hofbauer, Lorena;
Draganić, Kristina;
Tiefenbacher, Andreas;
Kothmayer, Michael;
Dietz, Charles H.;
Ramsahoye, Bernard H.;
Kenner, Lukas;
Bock, Christoph;
Seiser, Christian;
Ellmeier, Wilfried;
Schweikert, Gabriele

Publication type:

Article

mGene.web: a web service for accurate computational gene finding.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W312, doi. 10.1093/nar/gkp479

By:

Schweikert, Gabriele;
Behr, Jonas;
Zien, Alexander;
Zeller, Georg;
Ong, Cheng Soon;
Sonnenburg, Sören;
Rätsch, Gunnar

Publication type:

Article

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.

Published in:

2025

By:

Schreiber, Jacob Matthew;
Boix, Carles A.;
wook Lee, Jin;
Li, Hongyang;
Guan, Yuanfang;
Chang, Chun-Chieh;
Chang, Jen-Chien;
Hawkins-Hooker, Alex;
Schölkopf, Bernhard;
Schweikert, Gabriele;
Carulla, Mateo Rojas;
Canakoglu, Arif;
Guzzo, Francesco;
Nanni, Luca;
Masseroli, Marco;
Carman, Mark James;
Pinoli, Pietro;
Hong, Chenyang;
Yip, Kevin Y.;
Spence, Jefrey P.

Publication type:

Correction Notice

Reimagining AI: Introduction.

Published in:

Journal of Aesthetics & Phenomenology, 2022, v. 9, n. 2, p. 87, doi. 10.1080/20539320.2023.2213008

By:

Smith, Dominic;
Lushetich, Natasha;
Röck, Tina;
Carvalho, Edzia;
Lewis, Kenny;
Schweikert, Gabriele

Publication type:

Article

Network propagation for GWAS analysis: a practical guide to leveraging molecular networks for disease gene discovery.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 2, p. 1, doi. 10.1093/bib/bbae014

By:

Visonà, Giovanni;
Bouzigon, Emmanuelle;
Demenais, Florence;
Schweikert, Gabriele

Publication type:

Article

M³D: a kernel-based test for spatially correlated changes in methylation profiles.

Published in:

Bioinformatics, 2015, v. 31, n. 6, p. 809, doi. 10.1093/bioinformatics/btu749

By:

Mayo, Tom R.;
Schweikert, Gabriele;
Sanguinetti, Guido

Publication type:

Article

Getting personal with epigenetics: towards individual-specific epigenomic imputation with machine learning.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40211-2

By:

Hawkins-Hooker, Alex;
Visonà, Giovanni;
Narendra, Tanmayee;
Rojas-Carulla, Mateo;
Schölkopf, Bernhard;
Schweikert, Gabriele

Publication type:

Article

MMDiff: quantitative testing for shape changes in ChIP-Seq data sets.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-826

By:

Schweikert, Gabriele;
Cseke, Botond;
Clouaire, Thomas;
Bird, Adrian;
Sanguinetti, Guido

Publication type:

Article

DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 53, doi. 10.1186/s12859-016-1306-0

By:

Lukauskas, Saulius;
Visintainer, Roberto;
Sanguinetti, Guido;
Schweikert, Gabriele B.

Publication type:

Article

Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress.

Published in:

Nature Communications, 2017, v. 8, n. 4, p. 1, doi. 10.1038/s41467-017-00025-5

By:

van Nues, Rob;
Schweikert, Gabriele;
de Leau, Erica;
Selega, Alina;
Langford, Andrew;
Franklin, Ryan;
Iosub, Ira;
Wadsworth, Peter;
Sanguinetti, Guido;
Granneman, Sander

Publication type:

Article

Next generation genome annotation with mGene.ngs.

Published in:

2010

By:

Behr, Jonas;
Bohnert, Regina;
Zeller, Georg;
Schweikert, Gabriele;
Hartmann, Lisa;
Rätsch, Gunnar

Publication type:

Abstract

MeCP2 recognizes cytosine methylated tri-nucleotide and di-nucleotide sequences to tune transcription in the mammalian brain.

Published in:

PLoS Genetics, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pgen.1006793

By:

Lagger, Sabine;
Connelly, John C.;
Schweikert, Gabriele;
Webb, Shaun;
Selfridge, Jim;
Ramsahoye, Bernard H.;
Yu, Miao;
He, Chuan;
Sanguinetti, Guido;
Sowers, Lawrence C.;
Walkinshaw, Malcolm D.;
Bird, Adrian

Publication type:

Article

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02915-y

By:

Schreiber, Jacob;
Boix, Carles;
wook Lee, Jin;
Li, Hongyang;
Guan, Yuanfang;
Chang, Chun-Chieh;
Chang, Jen-Chien;
Hawkins-Hooker, Alex;
Schölkopf, Bernhard;
Schweikert, Gabriele;
Carulla, Mateo Rojas;
Canakoglu, Arif;
Guzzo, Francesco;
Nanni, Luca;
Masseroli, Marco;
Carman, Mark James;
Pinoli, Pietro;
Hong, Chenyang;
Yip, Kevin Y.;
Spence, Jeffrey P.

Publication type:

Article