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Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity.
Published in:
Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-021-01114-3
By:
- Xiong, Yuguang;
- Liu, Tong;
- Chen, Tong;
- Hansen, Jens;
- Hu, Bin;
- Chen, Yibang;
- Jayaraman, Gomathi;
- Schürer, Stephan;
- Vidovic, Dusica;
- Goldfarb, Joseph;
- Sobie, Eric A.;
- Birtwistle, Marc R.;
- Iyengar, Ravi;
- Li, Hong;
- Azeloglu, Evren U.
Publication type:
Article
An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows.
Published in:
Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00288-6
By:
- Penn, Steve;
- Lomax, Jane;
- Karlsson, Anneli;
- Antonucci, Vincent;
- Zachmann, Carl-Dieter;
- Kanza, Samantha;
- Schurer, Stephan;
- Turner, John
Publication type:
Article
DrugCentral 2018: an update.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D963, doi. 10.1093/nar/gky963
By:
- Ursu, Oleg;
- Holmes, Jayme;
- Bologa, Cristian G;
- Yang, Jeremy J;
- Mathias, Stephen L;
- Stathias, Vasileios;
- Nguyen, Dac-Trung;
- Schürer, Stephan;
- Oprea, Tudor
Publication type:
Article
Pharos: Collating protein information to shed light on the druggable genome.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D995, doi. 10.1093/nar/gkw1072
By:
- Dac-Trung Nguyen;
- Mathias, Stephen;
- Bologa, Cristian;
- Brunak, Soren;
- Fernandez, Nicolas;
- Gaulton, Anna;
- Hersey, Anne;
- Holmes, Jayme;
- Jensen, Lars Juhl;
- Karlsson, Anneli;
- Guixia Liu;
- Ma'ayan, Avi;
- Mandava, Geetha;
- Mani, Subramani;
- Mehta, Saurabh;
- Overington, John;
- Patel, Juhee;
- Rouillard, Andrew D.;
- Schürer, Stephan;
- Sheils, Timothy
Publication type:
Article
Automation, live-cell imaging, and endpoint cell viability for prostate cancer drug screens.
Published in:
PLoS ONE, 2023, v. 18, n. 10, p. 1, doi. 10.1371/journal.pone.0287126
By:
- Lyles, Rolando D. Z.;
- Martinez, Maria J.;
- Sherman, Benjamin;
- Schürer, Stephan;
- Burnstein, Kerry L.
Publication type:
Article
Far away from the lamppost.
Published in:
PLoS Biology, 2018, v. 16, n. 12, p. 1, doi. 10.1371/journal.pbio.3000067
By:
- Oprea, Tudor I.;
- Jan, Lily;
- Johnson, Gary L.;
- Roth, Bryan L.;
- Ma’ayan, Avi;
- Schürer, Stephan;
- Shoichet, Brian K.;
- Sklar, Larry A.;
- McManus, Michael T.
Publication type:
Article
Large-Scale Computational Screening Identifies First in Class Multitarget Inhibitor of EGFR Kinase and BRD4.
Published in:
Scientific Reports, 2015, p. 16924, doi. 10.1038/srep16924
By:
- Allen, Bryce K.;
- Mehta, Saurabh;
- Ember, Stewart W. J.;
- Schonbrunn, Ernst;
- Ayad, Nagi;
- Schürer, Stephan C.
Publication type:
Article
Tyrosine phosphorylation of CARM1 promotes its enzymatic activity and alters its target specificity.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47689-4
By:
- Itonaga, Hidehiro;
- Mookhtiar, Adnan K.;
- Greenblatt, Sarah M.;
- Liu, Fan;
- Martinez, Concepcion;
- Bilbao, Daniel;
- Rains, Masai;
- Hamard, Pierre-Jacques;
- Sun, Jun;
- Umeano, Afoma C.;
- Duffort, Stephanie;
- Chen, Chuan;
- Man, Na;
- Mas, Gloria;
- Tottone, Luca;
- Totiger, Tulasigeri;
- Bradley, Terrence;
- Taylor, Justin;
- Schürer, Stephan;
- Nimer, Stephen D.
Publication type:
Article
Formalization, Annotation and Analysis of Diverse Drug and Probe Screening Assay Datasets Using the BioAssay Ontology (BAO).
Published in:
PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049198
By:
- Vempati, Uma D.;
- Przydzial, Magdalena J.;
- Chung, Caty;
- Abeyruwan, Saminda;
- Mir, Ahsan;
- Sakurai, Kunie;
- Visser, Ubbo;
- Lemmon, Vance P.;
- Schürer, Stephan C.
Publication type:
Article
Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends characterizing systems-level drug action.
Published in:
Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00342
By:
- Vidović, Dušica;
- Koleti, Amar;
- Schürer, Stephan C.
Publication type:
Article
Drug and disease signature integration identifies synergistic combinations in glioblastoma.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07659-z
By:
- Stathias, Vasileios;
- Jermakowicz, Anna M.;
- Maloof, Marie E.;
- Forlin, Michele;
- Walters, Winston;
- Suter, Robert K.;
- Durante, Michael A.;
- Williams, Sion L.;
- Harbour, J. William;
- Volmar, Claude-Henry;
- Lyons, Nicholas J.;
- Wahlestedt, Claes;
- Graham, Regina M.;
- Ivan, Michael E.;
- Komotar, Ricardo J.;
- Sarkaria, Jann N.;
- Subramanian, Aravind;
- Golub, Todd R.;
- Schürer, Stephan C.;
- Ayad, Nagi G.
Publication type:
Article
Novel Curcumin Inspired Bis-Chalcone Promotes Endoplasmic Reticulum Stress and Glioblastoma Neurosphere Cell Death.
Published in:
Cancers, 2019, v. 11, n. 3, p. 357, doi. 10.3390/cancers11030357
By:
- Sansalone, Lorenzo;
- Veliz, Eduardo A.;
- Myrthil, Nadia G.;
- Stathias, Vasileios;
- Walters, Winston;
- Torrens, Ingrid I.;
- Schürer, Stephan C.;
- Vanni, Steven;
- Leblanc, Roger M.;
- Graham, Regina M.
Publication type:
Article
BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results.
Published in:
BMC Bioinformatics, 2011, v. 12, n. 1, p. 257, doi. 10.1186/1471-2105-12-257
By:
- Visser, Ubbo;
- Abeyruwan, Saminda;
- Vempati, Uma;
- Smith, Robin P.;
- Lemmon, Vance;
- Schürer, Stephan C.
Publication type:
Article
Antidiabetic actions of a non-agonist PPAR? ligand blocking Cdk5-mediated phosphorylation.
Published in:
Nature, 2011, v. 477, n. 7365, p. 477, doi. 10.1038/nature10383
By:
- Jang Hyun Choi;
- Banks, Alexander S.;
- Kamenecka, Theodore M.;
- Busby, Scott A.;
- Chalmers, Michael J.;
- Kumar, Naresh;
- Kuruvilla, Dana S.;
- Youseung Shin;
- Yuanjun He;
- Bruning, John B.;
- Marciano, David P.;
- Cameron, Michael D.;
- Laznik, Dina;
- Jurczak, Michael J.;
- Schürer, Stephan C.;
- Vidović, Dušica;
- Shulman, Gerald I.;
- Spiegelman, Bruce M.;
- Griffin, Patrick R.
Publication type:
Article
Suppression of T<sub>H</sub>17 differentiation and autoimmunity by a synthetic ROR ligand.
Published in:
Nature, 2011, v. 472, n. 7344, p. 491, doi. 10.1038/nature10075
By:
- Solt, Laura A.;
- Kumar, Naresh;
- Nuhant, Philippe;
- Yongjun Wang;
- Lauer, Janelle L.;
- Jin Liu;
- Istrate, Monica A.;
- Kamenecka, Theodore M.;
- Roush, William R.;
- Vidović, Dušica;
- Schürer, Stephan C.;
- Jihong Xu;
- Wagoner, Gail;
- Drew, Paul D.;
- Griffin, Patrick R.;
- Burris, Thomas P.
Publication type:
Article
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 237, doi. 10.1186/s12859-019-2723-7
By:
- He, Yongqun;
- Duncan, William D.;
- Cooper, Daniel J.;
- Hansen, Jens;
- Iyengar, Ravi;
- Ong, Edison;
- Walker, Kendal;
- Tibi, Omar;
- Smith, Sam;
- Serra, Lucas M.;
- Zheng, Jie;
- Sarntivijai, Sirarat;
- Schürer, Stephan;
- O'Shea, K. Sue;
- Diehl, Alexander D.
Publication type:
Article
Epigenetic Pathways and Glioblastoma Treatment: Insights From Signaling Cascades.
Published in:
Journal of Cellular Biochemistry, 2015, v. 116, n. 3, p. 351, doi. 10.1002/jcb.24990
By:
- Allen, Bryce K.;
- Stathias, Vasileios;
- Maloof, Marie E.;
- Vidovic, Dusica;
- Winterbottom, Emily F.;
- Capobianco, Anthony J.;
- Clarke, Jennifer;
- Schurer, Stephan;
- Robbins, David J.;
- Ayad, Nagi G.
Publication type:
Article
Distinct functional and conformational states of the human lymphoid tyrosine phosphatase catalytic domain can be targeted by choice of the inhibitor chemotype.
Published in:
Journal of Computer-Aided Molecular Design, 2011, v. 25, n. 9, p. 873, doi. 10.1007/s10822-011-9469-2
By:
- Vidović, Dušica;
- Xie, Yuli;
- Rinderspacher, Alison;
- Deng, Shi-Xian;
- Landry, Donald;
- Chung, Caty;
- Smith, Deborah;
- Tautz, Lutz;
- Schürer, Stephan
Publication type:
Article
Utilizing high throughput screening data for predictive toxicology models: protocols and application to MLSCN assays.
Published in:
Journal of Computer-Aided Molecular Design, 2008, v. 22, n. 6/7, p. 367, doi. 10.1007/s10822-008-9192-9
By:
- Guha, Rajarshi;
- Schürer, Stephan C.
Publication type:
Article
A multiparametric pharmacogenomic strategy for drug repositioning predicts therapeutic efficacy for glioblastoma cell lines.
Published in:
Neuro-Oncology Advances, 2022, v. 4, n. 1, p. 1, doi. 10.1093/noajnl/vdab192
By:
- Shah, Ashish H.;
- Suter, Robert;
- Gudoor, Pavan;
- Doucet-O'Hare, Tara T.;
- Stathias, Vasileios;
- Cajigas, Iahn;
- de la Fuente, Macarena;
- Govindarajan, Vaidya;
- Morell, Alexis A.;
- Eichberg, Daniel G.;
- Luther, Evan;
- Lu, Victor M.;
- Heiss, John;
- Komotar, Ricardo J.;
- Ivan, Michael E.;
- Schurer, Stephan;
- Gilbert, Mark R.;
- Ayad, Nagi G.
Publication type:
Article
Polypharmacology or Promiscuity? Structural Interactions of Resveratrol With Its Bandwagon of Targets.
Published in:
Frontiers in Pharmacology, 2018, p. N.PAG, doi. 10.3389/fphar.2018.01201
By:
- Saqib, Uzma;
- Kelley, Tanya T.;
- Panguluri, Siva K.;
- Liu, Dongfang;
- Savai, Rajkumar;
- Baig, Mirza S.;
- Schürer, Stephan C.
Publication type:
Article
Predictors of Clinical Outcome After Early Veno-Arterial Extracorporeal Membrane Oxygenation in Cardiogenic Shock Complicating ST-Elevation Myocardial Infarction.
Published in:
Journal of Invasive Cardiology, 2021, v. 33, n. 5, p. E329, doi. 10.25270/jic/20.00542
By:
- Szczanowicz, Lukasz;
- Majunke, Nicolas;
- de Waha-Thiele, Suzanne;
- Tietz, Franziska;
- Schürer, Stephan;
- Kirsch, Katharina;
- Desch, Steffen;
- Thiele, Holger;
- Sandri, Marcus
Publication type:
Article
Expanding a Wastewater-Based Surveillance Methodology for DNA Isolation from a Workflow Optimized for SARS-CoV-2 RNA Quantification.
Published in:
Journal of Biomolecular Techniques, 2023, v. 34, n. 4, p. 1, doi. 10.7171/3fc1f5fe.dfa8d906
By:
- Babler, Kristina M.;
- Sharkey, Mark E.;
- Amirali, Ayaaz;
- Boone, Melinda M.;
- Comerford, Samuel;
- Currall, Benjamin B.;
- Grills, George S.;
- Laine, Jennifer;
- Mason, Christopher E.;
- Reding, Brian;
- Schürer, Stephan;
- Stevenson, Mario;
- Vidović, Dušica;
- Williams, Sion L.;
- Solo-Gabriele, Helena M.
Publication type:
Article
Correction: AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK.
Published in:
2023
By:
- Essegian, Derek J.;
- Chavez, Valery;
- Khurshid, Rabia;
- Merchan, Jaime R.;
- Schürer, Stephan C.
Publication type:
Correction Notice
AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010263
By:
- Essegian, Derek J.;
- Chavez, Valery;
- Khurshid, Rabia;
- Merchan, Jaime R.;
- Schürer, Stephan C.
Publication type:
Article
TIN-X version 3: update with expanded dataset and modernized architecture for enhanced illumination of understudied targets.
Published in:
PeerJ, 2024, p. 1, doi. 10.7717/peerj.17470
By:
- Metzger, Vincent T.;
- Cannon, Daniel C.;
- Yang, Jeremy J.;
- Mathias, Stephen L.;
- Bologa, Cristian G.;
- Waller, Anna;
- Schürer, Stephan C.;
- Vidović, Dušica;
- Kelleher, Keith J.;
- Sheils, Timothy K.;
- Jensen, Lars Juhl;
- Lambert, Christophe G.;
- Oprea, Tudor I.;
- Edwards, Jeremy S.
Publication type:
Article
Pharos 2023: an integrated resource for the understudied human proteome.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D1405, doi. 10.1093/nar/gkac1033
By:
- Kelleher, Keith J;
- Sheils, Timothy K;
- Mathias, Stephen L;
- Yang, Jeremy J;
- Metzger, Vincent T;
- Siramshetty, Vishal B;
- Nguyen, Dac-Trung;
- Jensen, Lars Juhl;
- Vidović, Dušica;
- Schürer, Stephan C;
- Holmes, Jayme;
- Sharma, Karlie R;
- Pillai, Ajay;
- Bologa, Cristian G;
- Edwards, Jeremy S;
- Mathé, Ewy A;
- Oprea, Tudor I
Publication type:
Article
SigCom LINCS: data and metadata search engine for a million gene expression signatures.
Published in:
Nucleic Acids Research, 2022, v. 50, n. W1, p. W697, doi. 10.1093/nar/gkac328
By:
- Evangelista, John Erol;
- Clarke, Daniel J B;
- Xie, Zhuorui;
- Lachmann, Alexander;
- Jeon, Minji;
- Chen, Kerwin;
- Jagodnik, Kathleen M;
- Jenkins, Sherry L;
- Kuleshov, Maxim V;
- Wojciechowicz, Megan L;
- Schürer, Stephan C;
- Medvedovic, Mario;
- Ma'ayan, Avi
Publication type:
Article
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Published in:
Nucleic Acids Research, 2020, v. 48, n. W1, p. W85, doi. 10.1093/nar/gkaa436
By:
- Shamsaei, Behrouz;
- Chojnacki, Szymon;
- Pilarczyk, Marcin;
- Najafabadi, Mehdi;
- Niu, Wen;
- Chen, Chuming;
- Ross, Karen;
- Matlock, Andrea;
- Muhlich, Jeremy;
- Chutipongtanate, Somchai;
- Zheng, Jie;
- Turner, John;
- Vidović, Dušica;
- Jaffe, Jake;
- MacCoss, Michael;
- Wu, Cathy;
- Pillai, Ajay;
- Ma'ayan, Avi;
- Schürer, Stephan;
- Kouril, Michal
Publication type:
Article
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D431, doi. 10.1093/nar/gkz1023
By:
- Stathias, Vasileios;
- Turner, John;
- Koleti, Amar;
- Vidovic, Dusica;
- Cooper, Daniel;
- Fazel-Najafabadi, Mehdi;
- Pilarczyk, Marcin;
- Terryn, Raymond;
- Chung, Caty;
- Umeano, Afoma;
- Clarke, Daniel J B;
- Lachmann, Alexander;
- Evangelista, John Erol;
- Ma'ayan, Avi;
- Medvedovic, Mario;
- Schürer, Stephan C
Publication type:
Article
Synthesis and Application of a Permanently Immobilized Olefin-Metathesis Catalyst.
Published in:
Angewandte Chemie International Edition, 2000, v. 39, n. 21, p. 3898, doi. 10.1002/1521-3773(20001103)39:21<3898::AID-ANIE3898>3.0.CO;2-X
By:
- Schürer, Stephan C.;
- Gessler, Simon;
- Buschmann, Nicole;
- Blechert, Siegfried
Publication type:
Article
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1981-5
By:
- Ong, Edison;
- Jiangan Xie;
- Zhaohui Ni;
- Qingping Liu;
- Sarntivijai, Sirarat;
- Yu Lin;
- Cooper, Daniel;
- Terryn, Raymond;
- Stathias, Vasileios;
- Chung, Caty;
- Schürer, Stephan;
- Yongqun He
Publication type:
Article
Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures.
Published in:
Molecules, 2019, v. 24, n. 8, p. 1604, doi. 10.3390/molecules24081604
By:
- Cooper, Daniel J.;
- Schürer, Stephan
Publication type:
Article
Use of machine learning to identify novel, behaviorally active antagonists of the insect odorant receptor co-receptor (Orco) subunit.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-40640-4
By:
- Kepchia, Devin;
- Xu, Pingxi;
- Terryn, Raymond;
- Castro, Ana;
- Schürer, Stephan C.;
- Leal, Walter S.;
- Luetje, Charles W.
Publication type:
Article
Multiscale mapping of transcriptomic signatures for cardiotoxic drugs.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52145-4
By:
- Hansen, Jens;
- Xiong, Yuguang;
- Siddiq, Mustafa M.;
- Dhanan, Priyanka;
- Hu, Bin;
- Shewale, Bhavana;
- Yadaw, Arjun S.;
- Jayaraman, Gomathi;
- Tolentino, Rosa E.;
- Chen, Yibang;
- Martinez, Pedro;
- Beaumont, Kristin G.;
- Sebra, Robert;
- Vidovic, Dusica;
- Schürer, Stephan C.;
- Goldfarb, Joseph;
- Gallo, James M.;
- Birtwistle, Marc R.;
- Sobie, Eric A.;
- Azeloglu, Evren U.
Publication type:
Article
A Combined Ligand- and Structure-Based Virtual Screening Protocol Identifies Submicromolar PPARγ Partial Agonists.
Published in:
ChemMedChem, 2011, v. 6, n. 1, p. 94, doi. 10.1002/cmdc.201000428
By:
- Vidović, Dušica;
- Busby, Scott A.;
- Griffin, Patrick R.;
- Schürer, Stephan C.
Publication type:
Article
Divergent allosteric control of the IRE1? endoribonuclease using kinase inhibitors.
Published in:
Nature Chemical Biology, 2012, v. 8, n. 12, p. 982, doi. 10.1038/nchembio.1094
By:
- Wang, Likun;
- Perera, B Gayani K;
- Hari, Sanjay B;
- Bhhatarai, Barun;
- Backes, Bradley J;
- Seeliger, Markus A;
- Schürer, Stephan C;
- Oakes, Scott A;
- Papa, Feroz R;
- Maly, Dustin J
Publication type:
Article
Kinome-Wide Virtual Screening by Multi-Task Deep Learning.
Published in:
International Journal of Molecular Sciences, 2024, v. 25, n. 5, p. 2538, doi. 10.3390/ijms25052538
By:
- Hu, Jiaming;
- Allen, Bryce K.;
- Stathias, Vasileios;
- Ayad, Nagi G.;
- Schürer, Stephan C.
Publication type:
Article
TIN-X: target importance and novelty explorer.
Published in:
Bioinformatics, 2017, v. 33, n. 16, p. 2601, doi. 10.1093/bioinformatics/btx200
By:
- Cannon, Daniel C.;
- Yang, Jeremy J.;
- Mathias, Stephen L.;
- Ursu, Oleg;
- Mani, Subramani;
- Waller, Anna;
- Schürer, Stephan C.;
- Jensen, Lars Juhl;
- Sklar, Larry A.;
- Bologa, Cristian G.;
- Oprea, Tudor I.
Publication type:
Article
GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework.
Published in:
Bioinformatics, 2013, v. 29, n. 24, p. 3211, doi. 10.1093/bioinformatics/btt565
By:
- Przydzial, Magdalena J.;
- Bhhatarai, Barun;
- Koleti, Amar;
- Vempati, Uma;
- Schürer, Stephan C.
Publication type:
Article
Small Molecule-Mediated Activation of the Integrin CD11b/CD18 Reduces Inflammatory Disease.
Published in:
Science Signaling, 2011, v. 4, n. 189, p. 1, doi. 10.1126/scisignal.2001811
By:
- Maiguel, Dony;
- Faridi, Mohd Hafeez;
- Wei, Changli;
- Kuwano, Yoshihiro;
- Balla, Keir M.;
- Hernandez, Dayami;
- Barth, Constantinos J.;
- Lugo, Geanncarlo;
- Donnelly, Mary;
- Nayer, Ali;
- Moita, Luis F.;
- Schürer, Stephan;
- Traver, David;
- Ruiz, Phillip;
- Vazquez-Padron, Roberto I.;
- Ley, Klaus;
- Reiser, Jochen;
- Gupta, Vineet
Publication type:
Article

Found: 41