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An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-022-35713-4
By:
- Sherry, Norelle L.;
- Horan, Kristy A.;
- Ballard, Susan A.;
- Gonҫalves da Silva, Anders;
- Gorrie, Claire L.;
- Schultz, Mark B.;
- Stevens, Kerrie;
- Valcanis, Mary;
- Sait, Michelle L.;
- Stinear, Timothy P.;
- Howden, Benjamin P.;
- Seemann, Torsten
Publication type:
Article
Nuclear and Mitochondrial Patterns of Population Structure in North Pacific False Killer Whales (Pseudorca crassidens).
Published in:
Journal of Heredity, 2014, v. 105, n. 5, p. 1, doi. 10.1093/jhered/esu029
By:
- Martien, Karen K.;
- Chivers, Susan J.;
- Baird, Robin W.;
- Archer, Frederick I.;
- Gorgone, Antoinette M.;
- Hancock-Hanser, Brittany L.;
- Mattila, David;
- McSweeney, Daniel J.;
- Oleson, Erin M.;
- Palmer, Carol;
- Pease, Victoria L.;
- Robertson, Kelly M.;
- Schorr, Gregory S.;
- Schultz, Mark B.;
- Webster, Daniel L.;
- Taylor, Barbara L.
Publication type:
Article
Phylogeography of var gene repertoires reveals fine-scale geospatial clustering of Plasmodium falciparum populations in a highly endemic area.
Published in:
Molecular Ecology, 2015, v. 24, n. 2, p. 484, doi. 10.1111/mec.13033
By:
- Tessema, Sofonias K.;
- Monk, Stephanie L.;
- Schultz, Mark B.;
- Tavul, Livingstone;
- Reeder, John C.;
- Siba, Peter M.;
- Mueller, Ivo;
- Barry, Alyssa E.
Publication type:
Article
Sea-level changes and palaeo-ranges: reconstruction of ancient shorelines and river drainages and the phylogeography of the Australian land crayfish Engaeus sericatus Clark (Decapoda: Parastacidae).
Published in:
Molecular Ecology, 2008, v. 17, n. 24, p. 5291, doi. 10.1111/j.1365-294X.2008.03996.x
By:
- SCHULTZ, MARK B.;
- IERODIACONOU, DANIEL A.;
- SMITH, SARAH A.;
- HORWITZ, PIERRE;
- RICHARDSON, ALASTAIR M. M.;
- CRANDALL, KEITH A.;
- AUSTIN, CHRISTOPHER M.
Publication type:
Article
Distribution and Diversity of Soil Microfauna from East Antarctica: Assessing the Link between Biotic and Abiotic Factors.
Published in:
PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0087529
By:
- Velasco-Castrillón, Alejandro;
- Schultz, Mark B.;
- Colombo, Federica;
- Gibson, John A. E.;
- Davies, Kerrie A.;
- Austin, Andrew D.;
- Stevens, Mark I.
Publication type:
Article
Epidemiology of carbapenem resistant Acinetobacter baumannii in New Zealand.
Published in:
2022
By:
- Blakiston, Matthew R;
- Schultz, Mark B;
- Basu, Indira;
- Ballard, Susan A;
- Williamson, Deborah;
- Roberts, Sally
Publication type:
journal article
Epidemiology of carbapenem resistant Acinetobacter baumannii in New Zealand.
Published in:
New Zealand Medical Journal, 2022, v. 135, n. 1561, p. 65
By:
- Blakiston, Matthew R.;
- Schultz, Mark B.;
- Basu, Indira;
- Ballard, Susan A.;
- Williamson, Deborah;
- Roberts, Sally
Publication type:
Article
Genomic Insights into a Sustained National Outbreak of Yersinia pseudotubercuiosis.
Published in:
Genome Biology & Evolution, 2016, v. 8, n. 12, p. 3806, doi. 10.1093/gbe/evw285
By:
- Williamson, Deborah A.;
- Baines, Sarah L.;
- Carter, Glen P.;
- da Silva, Anders Gonçalves;
- Xiaoyun Ren;
- Sherwood, Jill;
- Dufour, Muriel;
- Schultz, Mark B.;
- French, Nigel P.;
- Seemann, Torsten;
- Stinear, Timothy P.;
- Howden, Benjamin P.
Publication type:
Article
Donor-Derived Mycoplasma hominis and an Apparent Cluster of M. hominis Cases in Solid Organ Transplant Recipients.
Published in:
Clinical Infectious Diseases, 2017, v. 65, n. 9, p. 1504, doi. 10.1093/cid/cix601
By:
- Smibert, Olivia C.;
- Wilson, Heather L.;
- Sohail, Asma;
- Narayanasamy, Shanti;
- Schultz, Mark B.;
- Ballard, Susan A.;
- Kwong, Jason C.;
- de Boer, Jim;
- Morrissey, C. Orla;
- Peleg, Anton Y.;
- Snell, Greg I.;
- Paraskeva, Miranda A.;
- Jenney, Adam W. J.
Publication type:
Article
Isolation and rapid sharing of the 2019 novel coronavirus (SARS-CoV-2) from the first patient diagnosed with COVID-19 in Australia.
Published in:
2020
By:
- Caly, Leon;
- Druce, Julian;
- Roberts, Jason;
- Bond, Katherine;
- Tran, Thomas;
- Kostecki, Renata;
- Yoga, Yano;
- Naughton, William;
- Taiaroa, George;
- Seemann, Torsten;
- Schultz, Mark B;
- Howden, Benjamin P;
- Korman, Tony M;
- Lewin, Sharon R;
- Williamson, Deborah A;
- Catton, Mike G
Publication type:
journal article
Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak.
Published in:
PeerJ, 2018, p. 1, doi. 10.7717/peerj.4210
By:
- Kwong, Jason C.;
- Lane, Courtney R.;
- Romanes, Finn;
- da Silva, Anders Gonçalves;
- Easton, Marion;
- Cronin, Katie;
- Waters, Mary Jo;
- Tomita, Takehiro;
- Stevens, Kerrie;
- Schultz, Mark B.;
- Baines, Sarah L.;
- Sherry, Norelle L.;
- Carter, Glen P.;
- Mu, Andre;
- Sait, Michelle;
- Ballard, Susan A.;
- Seemann, Torsten;
- Stinear, Timothy P.;
- Howden, Benjamin P.
Publication type:
Article
Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes.
Published in:
BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-19
By:
- Han Ming Gan;
- Schultz, Mark B.;
- Austin, Christopher M.
Publication type:
Article
Mitochondrial DNA analyses reveal widespread tardigrade diversity in Antarctica.
Published in:
Invertebrate Systematics, 2015, v. 29, n. 6, p. 578, doi. 10.1071/IS14019
By:
- Velasco-Castrillón, Alejandro;
- McInnes, Sandra J.;
- Schultz, Mark B.;
- Arróniz-Crespo, María;
- D'Haese, Cyrille A.;
- Gibson, John A. E.;
- Adams, Byron J.;
- Page, Timothy J.;
- Austin, Andrew D.;
- Cooper, Steven J. B.;
- Stevens, Mark I.
Publication type:
Article
Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.
Published in:
2019
By:
- Bojang, Abdoulie;
- Baines, Sarah L;
- Donovan, Liam;
- Guerillot, Romain;
- Stevens, Kerrie;
- Higgs, Charlie;
- Bottomley, Christian;
- Secka, Ousman;
- Schultz, Mark B;
- Silva, Anders Gonçalves da;
- Seemann, Torsten;
- Stinear, Timothy P;
- Roca, Anna;
- Howden, Benjamin P;
- Gonçalves da Silva, Anders
Publication type:
journal article
The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study.
Published in:
2018
By:
- Lee, Robyn S;
- Silva, Anders Gonçalves da;
- Baines, Sarah L;
- Strachan, Janet;
- Ballard, Susan;
- Carter, Glen P;
- Kwong, Jason C;
- Schultz, Mark B;
- Bulach, Dieter M;
- Seemann, Torsten;
- Gonçalves da Silva, Anders;
- Stinear, Timothy P;
- Howden, Benjamin P
Publication type:
journal article
Comment on: Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.
Published in:
2017
By:
- Kwong, Jason C.;
- Schultz, Mark B.;
- Williamson, Deborah A.;
- Stinear, Timothy P.;
- Seemann, Torsten;
- Howden, Benjamin P.
Publication type:
Letter
Bandage: interactive visualization of de novo genome assemblies.
Published in:
Bioinformatics, 2015, v. 31, n. 20, p. 3350, doi. 10.1093/bioinformatics/btv383
By:
- Wick, Ryan R.;
- Schultz, Mark B.;
- Zobel, Justin;
- Holt, Kathryn E.
Publication type:
Article
Tracking the COVID-19 pandemic in Australia using genomics.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18314-x
By:
- Seemann, Torsten;
- Lane, Courtney R.;
- Sherry, Norelle L.;
- Duchene, Sebastian;
- Gonçalves da Silva, Anders;
- Caly, Leon;
- Sait, Michelle;
- Ballard, Susan A.;
- Horan, Kristy;
- Schultz, Mark B.;
- Hoang, Tuyet;
- Easton, Marion;
- Dougall, Sally;
- Stinear, Timothy P.;
- Druce, Julian;
- Catton, Mike;
- Sutton, Brett;
- van Diemen, Annaliese;
- Alpren, Charles;
- Williamson, Deborah A.
Publication type:
Article
Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq).
Published in:
Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0572-z
By:
- Guérillot, Romain;
- Li, Lucy;
- Baines, Sarah;
- Howden, Brian;
- Schultz, Mark B.;
- Seemann, Torsten;
- Monk, Ian;
- Pidot, Sacha J.;
- Gao, Wei;
- Giulieri, Stefano;
- Gonçalves da Silva, Anders;
- D’Agata, Anthony;
- Tomita, Takehiro;
- Peleg, Anton Y.;
- Stinear, Timothy P.;
- Howden, Benjamin P.
Publication type:
Article

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