Works by Schriml, Lynn M

Results: 27

The Genomic Standards Consortium.

Published in:

PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001088

By:

Field, Dawn;
Amaral-Zettler, Linda;
Cochrane, Guy;
Cole, James R.;
Dawyndt, Peter;
Garrity, George M.;
Gilbert, Jack;
Glöckner, Frank Oliver;
Hirschman, Lynette;
Karsch-Mizrachi, Ilene;
Klenk, Hans-Peter;
Knight, Rob;
Kottmann, Renzo;
Kyrpides, Nikos;
Meyer, Folker;
Gil, Inigo San;
Sansone, Susanna-Assunta;
Schriml, Lynn M.;
Sterk, Peter;
Tatusova, Tatiana

Publication type:

Article

MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment.

Published in:

GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae071

By:

Simpson, Abigayle;
Wood-Charlson, Elisha M;
Smith, Montana;
Koch, Benjamin J;
Beilsmith, Kathleen;
Kimbrel, Jeffrey A;
Kellom, Matthew;
Hunter, Christopher I;
Walls, Ramona L;
Schriml, Lynn M;
Wilhelm, Roland C

Publication type:

Article

A decade of GigaScience: 10 years of the evolving genomic and biomedical standards landscape.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac047

By:

Schriml, Lynn M

Publication type:

Article

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D754, doi. 10.1093/nar/gkp832

By:

Schriml, Lynn M.;
Arze, Cesar;
Nadendla, Suvarna;
Ganapathy, Anu;
Felix, Victor;
Mahurkar, Anup;
Phillippy, Katherine;
Gussman, Aaron;
Angiuoli, Sam;
Ghedin, Elodie;
White, Owen;
Hall, Neil

Publication type:

Article

Database resources of the National Center for Biotechnology Information.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d39

By:

Wheeler, David L.;
Barrett, Tanya;
Benson, Dennis A.;
Bryant, Stephen H.;
Canese, Kathi;
Church, Deanna M.;
DiCuccio, Michael;
Edgar, Ron;
Federhen, Scott;
Helmberg, Wolfgang;
Kenton, David L.;
Khovayko, Oleg;
Lipman, David J.;
Madden, Thomas L.;
Maglott, Donna R.;
Ostell, James;
Pontius, Joan U.;
Pruitt, Kim D.;
Schuler, Gregory D.;
Schriml, Lynn M.

Publication type:

Article

Database resources of the National Center for Biotechnology Information: update.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d35

By:

Wheeler, David L.;
Church, Deanna M.;
Edgar, Ron;
Federhen, Scott;
Helmberg, Wolfgang;
Madden, Thomas L.;
Pontius, Joan U.;
Schuler, Gregory D.;
Schriml, Lynn M.;
Sequeira, Edwin;
Suzek, Tugba O.;
Tatusova, Tatiana A.;
Wagner, Lukas

Publication type:

Article

Database resources of the National Center for Biotechnology.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 28, doi. 10.1093/nar/gkg033

By:

Wheeler, David L.;
Church, Deanna M.;
Federhen, Scott;
Lash, Alex E.;
Madden, Thomas L.;
Pontius, Joan U.;
Schuler, Gregory D.;
Schriml, Lynn M.;
Sequeira, Edwin;
Tatusova, Tatiana A.;
Wagner, Lukas

Publication type:

Article

Database resources of the National Center for Biotechnology Information: 2002 update.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 1, p. 13, doi. 10.1093/nar/30.1.13

By:

Wheeler, David L.;
Church, Deanna M.;
Lash, Alex E.;
Leipe, Detlef D.;
Madden, Thomas L.;
Pontius, Joan U.;
Schuler, Gregory D.;
Schriml, Lynn M.;
Tatusova, Tatiana A.;
Wagner, Lukas;
Rapp, Barbara A.

Publication type:

Article

A standards perspective on genomic data reusability and reproducibility.

Published in:

Frontiers in Bioinformatics, 2025, p. 1, doi. 10.3389/fbinf.2025.1572937

By:

Keenum, Ishi;
Jackson, Scott A.;
Eloe-Fadrosh, Emiley;
Schriml, Lynn M.

Publication type:

Article

FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration.

Published in:

NPJ Science of Food, 2018, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41538-018-0032-6

By:

Dooley, Damion M.;
Griffiths, Emma J.;
Gosal, Gurinder S.;
Buttigieg, Pier L.;
Hoehndorf, Robert;
Lange, Matthew C.;
Schriml, Lynn M.;
Brinkman, Fiona S. L.;
Hsiao, William W. L.

Publication type:

Article

COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab191

By:

Gogate, Nikhita;
Lyman, Daniel;
Bell, Amanda;
Cauley, Edmund;
Crandall, Keith A;
Joseph, Ashia;
Kahsay, Robel;
Natale, Darren A;
Schriml, Lynn M;
Sen, Sabyasach;
Mazumder, Raja

Publication type:

Article

Database resources of the National Center for Biotechnology Information.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 1, p. 11, doi. 10.1093/nar/29.1.11

By:

Wheeler, David L.;
Church, Deanna M.;
Lash, Alex E.;
Leipe, Detlef D.;
Madden, Thomas L.;
Pontius, Joan U.;
Schuler, Gregory D.;
Schriml, Lynn M.;
Tatusova, Tatiana A.;
Wagner, Lukas;
Rapp, Barbara A.

Publication type:

Article

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 1, p. 1, doi. 10.1038/ismej.2013.176

By:

Glass, Elizabeth M;
Dribinsky, Yekaterina;
Yilmaz, Pelin;
Levin, Hal;
Van Pelt, Robert;
Wendel, Doug;
Wilke, Andreas;
Eisen, Jonathan A;
Huse, Sue;
Shipanova, Anna;
Sogin, Mitch;
Stajich, Jason;
Knight, Rob;
Meyer, Folker;
Schriml, Lynn M

Publication type:

Article

The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1305, doi. 10.1093/nar/gkad1051

By:

Baron, J Allen;
Johnson, Claudia Sanchez-Beato;
Schor, Michael A;
Olley, Dustin;
Nickel, Lance;
Felix, Victor;
Munro, James B;
Bello, Susan M;
Bearer, Cynthia;
Lichenstein, Richard;
Bisordi, Katharine;
Koka, Rima;
Greene, Carol;
Schriml, Lynn M

Publication type:

Article

ECO, the Evidence & Conclusion Ontology: community standard for evidence information.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1186, doi. 10.1093/nar/gky1036

By:

Giglio, Michelle;
Tauber, Rebecca;
Nadendla, Suvarna;
Munro, James;
Olley, Dustin;
Ball, Shoshannah;
Mitraka, Elvira;
Schriml, Lynn M;
Gaudet, Pascale;
Hobbs, Elizabeth T;
Erill, Ivan;
Siegele, Deborah A;
Hu, James C;
Mungall, Chris;
Chibucos, Marcus C

Publication type:

Article

Human Disease Ontology 2018 update: classification, content and workflow expansion.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D955, doi. 10.1093/nar/gky1032

By:

Schriml, Lynn M;
Mitraka, Elvira;
Munro, James;
Tauber, Becky;
Schor, Mike;
Nickle, Lance;
Felix, Victor;
Jeng, Linda;
Bearer, Cynthia;
Lichenstein, Richard;
Bisordi, Katharine;
Campion, Nicole;
Hyman, Brooke;
Kurland, David;
Oates, Connor Patrick;
Kibbey, Siobhan;
Sreekumar, Poorna;
Le, Chris;
Giglio, Michelle;
Greene, Carol

Publication type:

Article

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D1071, doi. 10.1093/nar/gku1011

By:

Kibbe, Warren A.;
Arze, Cesar;
Felix, Victor;
Mitraka, Elvira;
Bolton, Evan;
Fu, Gang;
Mungall, Christopher J.;
Binder, Janos X.;
Malone, James;
Vasant, Drashtti;
Parkinson, Helen;
Schriml, Lynn M.

Publication type:

Article

Assessing resource use: a case study with the Human Disease Ontology.

Published in:

Database: The Journal of Biological Databases & Curation, 2023, v. 2023, p. 1, doi. 10.1093/database/baad007

By:

Baron, J. Allen;
Schriml, Lynn M

Publication type:

Article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Published in:

Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069

By:

Jackson, Rebecca;
Matentzoglu, Nicolas;
Overton, James A;
Vita, Randi;
Balhoff, James P;
Buttigieg, Pier Luigi;
Carbon, Seth;
Courtot, Melanie;
Diehl, Alexander D;
Dooley, Damion M;
Duncan, William D;
Harris, Nomi L;
Haendel, Melissa A;
Lewis, Suzanna E;
Natale, Darren A;
Osumi-Sutherland, David;
Ruttenberg, Alan;
Schriml, Lynn M;
Smith, Barry;
Stoeckert Jr., Christian J

Publication type:

Article

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav032

By:

Tsung-Jung Wu;
Schriml, Lynn M.;
Qing-Rong Chen;
Colbert, Maureen;
Crichton, Daniel J.;
Finney, Richard;
Ying Hu;
Kibbe, Warren A.;
Kincaid, Heather;
Meerzaman, Daoud;
Mitraka, Elvira;
Yang Pan;
Smith, Krista M.;
Srivastava, Sudhir;
Ward, Sari;
Cheng Yan;
Mazumder, Raja

Publication type:

Article

Standardized Metadata for Human Pathogen/Vector Genomic Sequences.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099979

By:

Dugan, Vivien G.;
Emrich, Scott J.;
Giraldo-Calderón, Gloria I.;
Harb, Omar S.;
Newman, Ruchi M.;
Pickett, Brett E.;
Schriml, Lynn M.;
Stockwell, Timothy B.;
Stoeckert Jr, Christian J.;
Sullivan, Dan E.;
Singh, Indresh;
Ward, Doyle V.;
Yao, Alison;
Zheng, Jie;
Barrett, Tanya;
Birren, Bruce;
Brinkac, Lauren;
Bruno, Vincent M.;
Caler, Elizabet;
Chapman, Sinéad

Publication type:

Article

An ATP-binding cassette gene (ABCG3) closely related to the multidrug transporter ABCG2 (MXR/ABCP) has an unusual ATP-binding domain.

Published in:

Mammalian Genome, 2001, v. 12, n. 1, p. 86, doi. 10.1007/s003350010237

By:

Mickley, Lyn;
Jain, Pawan;
Miyake, Keisuke;
Schriml, Lynn M.;
Rao, Konetti;
Fojo, Tito;
Bates, Susan;
Dean, Michael

Publication type:

Article

COVID-19 pandemic reveals the peril of ignoring metadata standards.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0524-5

By:

Schriml, Lynn M.;
Chuvochina, Maria;
Davies, Neil;
Eloe-Fadrosh, Emiley A.;
Finn, Robert D.;
Hugenholtz, Philip;
Hunter, Christopher I.;
Hurwitz, Bonnie L.;
Kyrpides, Nikos C.;
Meyer, Folker;
Mizrachi, Ilene Karsch;
Sansone, Susanna-Assunta;
Sutton, Granger;
Tighe, Scott;
Walls, Ramona

Publication type:

Article

Wikidata as a knowledge graph for the life sciences.

Published in:

eLife, 2020, p. 1, doi. 10.7554/eLife.52614

By:

WAAGMEESTER, ANDRA;
STUPP, GREGORY;
BURGSTALLER-MUEHLBACHER, SEBASTIAN;
GOOD, BENJAMIN M.;
GRIFFITH, MALACHI;
GRIFFITH, OBI L.;
HANSPERS, KRISTINA;
HERMJAKOB, HENNING;
HUDSON, TOBY S.;
HYBISKE, KEVIN;
KEATING, SARAH M.;
MANSKE, MAGNUS;
MAYERS, MICHAEL;
MIETCHEN, DANIEL;
MITRAKA, ELVIRA;
PICO, ALEXANDER R.;
PUTMAN, TIMOTHY;
RIUTTA, ANDERS;
QUERALT-ROSINACH, NURIA;
SCHRIML, LYNN M.

Publication type:

Article

Mutational spectra of PTEN/MMAC1 gene: a tumor suppressor with lipid phosphatase activity.

Published in:

1999

By:

Ali, Iqbal Unnisa;
Schriml, Lynn M.;
Ali, I U;
Schriml, L M;
Dean, M

Publication type:

journal article

A blueprint for contemporary studies of microbiomes.

Published in:

Microbiome, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40168-025-02091-0

By:

Bindels, Laure B.;
Watts, Joy E. M.;
Theis, Kevin R.;
Carrion, Víctor J.;
Ossowicki, Adam;
Seifert, Jana;
Oh, Julia;
Shao, Yongqi;
Hilty, Markus;
Kumar, Purnima;
Hildebrand, Falk;
Lovejoy, Connie;
Wigley, Paul;
Yu, Ke;
Zhang, Meiling;
Zhang, Tong;
Walter, Jens;
Desai, Mahesh S.;
Huws, Sharon Ann;
Schriml, Lynn M.

Publication type:

Article

Genomic reproducibility in the bioinformatics era.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03343-2

By:

Baykal, Pelin Icer;
Łabaj, Paweł Piotr;
Markowetz, Florian;
Schriml, Lynn M.;
Stekhoven, Daniel J.;
Mangul, Serghei;
Beerenwinkel, Niko

Publication type:

Article