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PathwayNexus: a tool for interactive metabolic data analysis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae310
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- Publication type:
- Article
Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data.
- Published in:
- Journal of Cheminformatics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13321-024-00822-3
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- Publication type:
- Article
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.
- Published in:
- 2024
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- Publication type:
- Editorial
Coracle—a machine learning framework to identify bacteria associated with continuous variables.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad749
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- Publication type:
- Article
Beyond the horizon: immersive developments for animal ecology research.
- Published in:
- Visual Computing for Industry, Biomedicine & Art, 2023, v. 6, n. 1, p. 1, doi. 10.1186/s42492-023-00138-3
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- Publication type:
- Article
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
- Published in:
- Journal of Integrative Bioinformatics, 2023, v. 20, n. 1, p. 1, doi. 10.1515/jib-2023-0004
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- Publication type:
- Article
APL@voro—interactive visualization and analysis of cell membrane simulations.
- Published in:
- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad083
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- Publication type:
- Article
Dynamic Metabolic and Transcriptional Responses of Proteasome-Inhibited Neurons.
- Published in:
- Antioxidants, 2023, v. 12, n. 1, p. 164, doi. 10.3390/antiox12010164
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- Publication type:
- Article
Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality.
- Published in:
- Journal of Integrative Bioinformatics, 2022, v. 19, n. 4, p. 1, doi. 10.1515/jib-2022-0034
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- Publication type:
- Article
Quantitative visual computing.
- Published in:
- IT: Information Technology, 2022, v. 64, n. 4/5, p. 119, doi. 10.1515/itit-2022-0048
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- Publication type:
- Article
Immersive analytics: An overview.
- Published in:
- IT: Information Technology, 2022, v. 64, n. 4/5, p. 155, doi. 10.1515/itit-2022-0037
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- Publication type:
- Article
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac212
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- Publication type:
- Article
Design considerations for representing systems biology information with the Systems Biology Graphical Notation.
- Published in:
- Journal of Integrative Bioinformatics, 2022, v. 19, n. 2, p. 1, doi. 10.1515/jib-2022-0024
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- Publication type:
- Article
Spatially resolved transcriptomics in immersive environments.
- Published in:
- Visual Computing for Industry, Biomedicine & Art, 2022, v. 5, n. 1, p. 1, doi. 10.1186/s42492-021-00098-6
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- Publication type:
- Article
Immersive Analytics with Abstract 3D Visualizations: A Survey.
- Published in:
- Computer Graphics Forum, 2022, v. 41, n. 1, p. 201, doi. 10.1111/cgf.14430
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- Publication type:
- Article
Spatially resolved transcriptomics in immersive environments.
- Published in:
- Visual Computing for Industry, Biomedicine & Art, 2022, v. 5, n. 1, p. 1, doi. 10.1186/s42492-021-00098-6
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- Publication type:
- Article
Visual exploration of large metabolic models.
- Published in:
- Bioinformatics, 2021, v. 37, n. 23, p. 4460, doi. 10.1093/bioinformatics/btab335
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- Publication type:
- Article
Specifications of standards in systems and synthetic biology: status and developments in 2021.
- Published in:
- 2021
- By:
- Publication type:
- Editorial
Health monitoring in birds using bio-loggers and whole blood transcriptomics.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-90212-8
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- Publication type:
- Article
Molecular dynamics simulations informed by membrane lipidomics reveal the structure-interaction relationship of polymyxins with the lipid A-based outer membrane of Acinetobacter baumannii.
- Published in:
- 2020
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- Publication type:
- journal article
Genome-Scale Metabolic Modeling Reveals Metabolic Alterations of Multidrug-Resistant Acinetobacter baumannii in a Murine Bloodstream Infection Model.
- Published in:
- Microorganisms, 2020, v. 8, n. 11, p. 1793, doi. 10.3390/microorganisms8111793
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- Publication type:
- Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- 2020
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- Publication type:
- Correction Notice
Specifications of standards in systems and synthetic biology: status and developments in 2020.
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0022
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- Publication type:
- Article
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0005
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- Publication type:
- Article
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
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- Publication type:
- Article
Erratum to Machine Learning Prediction of Cyanobacterial Toxin (Microcystin) Toxicodynamics in Humans.
- Published in:
- Altex, 2020, v. 37, n. 2, p. 337, doi. 10.14573/altex.1904031e
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- Publication type:
- Article
Machine Learning Prediction of Cyanobacterial Toxin (Microcystin) Toxicodynamics in Humans.
- Published in:
- Altex, 2020, v. 37, n. 1, p. 24, doi. 10.14573/altex.1904031s
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- Publication type:
- Article
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 4, p. 1, doi. 10.1515/jib-2019-0059
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- Publication type:
- Article
Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 3, p. 1, doi. 10.1515/jib-2019-0026
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- Publication type:
- Article
Corrigendum to A High-Throughput Approach to Identify Specific Neurotoxicants / Developmental Toxicants in Human Neuronal Cell Function Assays.
- Published in:
- Altex, 2019, v. 36, n. 3, p. 505, doi. 10.14573/altex.1904111
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- Publication type:
- Article
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0022
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- Publication type:
- Article
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0035
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- Publication type:
- Article
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
- Published in:
- 2018
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- Publication type:
- Correction Notice
The Virtual-Spine Platform—Acquiring, visualizing, and analyzing individual sitting behavior.
- Published in:
- PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0195670
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- Publication type:
- Article
A High-Throughput Approach to Identify Specific Neurotoxicants / Developmental Toxicants in Human Neuronal Cell Function Assays.
- Published in:
- Altex, 2018, v. 35, n. 2, p. 235, doi. 10.14573/altex.1712182
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- Publication type:
- Article
Genome-scale metabolic modeling of responses to polymyxins in Pseudomonas aeruginosa.
- Published in:
- GigaScience, 2018, v. 7, n. 4, p. 1, doi. 10.1093/gigascience/giy021
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- Publication type:
- Article
BioVis Explorer: A visual guide for biological data visualization techniques.
- Published in:
- PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187341
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- Publication type:
- Article
Integration and virtual reality exploration of biomedical data with CmPI and VANTED.
- Published in:
- IT: Information Technology, 2017, v. 59, n. 4, p. 181, doi. 10.1515/itit-2016-0030
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- Publication type:
- Article
The Metabolic Signature of Biomass Formation in Barley.
- Published in:
- Plant & Cell Physiology, 2016, v. 57, n. 9, p. 1943, doi. 10.1093/pcp/pcw117
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- Publication type:
- Article
Metabolic Architecture of the Cereal Grain and Its Relevance to Maximize Carbon Use Efficiency.
- Published in:
- Plant Physiology, 2015, v. 169, n. 3, p. 1698, doi. 10.1104/pp.15.00981
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- Publication type:
- Article
Quantitative Multilevel Analysis of Central Metabolism in Developing Oilseeds of Oilseed Rape during in Vitro Culture.
- Published in:
- Plant Physiology, 2015, v. 168, n. 3, p. 828, doi. 10.1104/pp.15.00385
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- Publication type:
- Article
A unified framework for estimating parameters of kinetic biological models.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0500-9
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- Publication type:
- Article
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
- Published in:
- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1285, doi. 10.4056/sigs.5279417
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- Publication type:
- Article
Plant Metabolic Modeling: Achieving New Insight into Metabolism and Metabolic Engineering.
- Published in:
- Plant Cell, 2014, v. 26, n. 10, p. 3847, doi. 10.1105/tpc.114.130328
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- Publication type:
- Article
Petri Nets in the Biosciences.
- Published in:
- IT: Information Technology, 2014, v. 56, n. 2, p. 43, doi. 10.1515/itit-2014-1042
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- Publication type:
- Article
Translation of SBGN maps: Process Description to Activity Flow.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-115
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- Publication type:
- Article
Controllability in Cancer Metabolic Networks According to Drug Targets as Driver Nodes.
- Published in:
- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079397
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- Publication type:
- Article
Multiscale Metabolic Modeling: Dynamic Flux Balance Analysis on a Whole-Plant Scale.
- Published in:
- Plant Physiology, 2013, v. 163, n. 2, p. 637, doi. 10.1104/pp.113.224006
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- Publication type:
- Article
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-250
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- Publication type:
- Article
An improved constraint filtering technique for inferring hidden states and parameters of a biological model.
- Published in:
- Bioinformatics, 2013, v. 29, n. 8, p. 1052, doi. 10.1093/bioinformatics/btt097
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- Publication type:
- Article