Works by Schrago, Carlos G.

Results: 45

Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission.

Published in:

Journal of Molecular Evolution, 2008, v. 66, n. 6, p. 598, doi. 10.1007/s00239-008-9112-6

By:

Soares, André E. R.;
Soares, Marcelo A.;
Schrago, Carlos G.

Publication type:

Article

Predicting novel mosquito-associated viruses from metatranscriptomic dark matter.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae077

By:

de Andrade, Amanda Araújo Serrão;
Brustolini, Otávio;
Grivet, Marco;
Schrago, Carlos G;
Vasconcelos, Ana Tereza Ribeiro

Publication type:

Article

Challenges in Assembling the Dated Tree of Life.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 10, p. 1, doi. 10.1093/gbe/evae229

By:

Schrago, Carlos G;
Mello, Beatriz

Publication type:

Article

Modeling Substitution Rate Evolution across Lineages and Relaxing the Molecular Clock.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 9, p. 1, doi. 10.1093/gbe/evae199

By:

Mello, Beatriz;
Schrago, Carlos G

Publication type:

Article

Newly Discovered Occurrences and Gene Tree of the Extracellular Globins and Linker Chains from the Giant Hexagonal Bilayer Hemoglobin in Metazoans.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 3, p. 597, doi. 10.1093/gbe/evz012

By:

Belato, Flávia A;
Schrago, Carlos G;
Coates, Christopher J;
Halanych, Kenneth M;
Costa-Paiva, Elisa M

Publication type:

Article

Broad Phylogenetic Occurrence of the Oxygen-Binding Hemerythrins in Bilaterians.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 10, p. 2580, doi. 10.1093/gbe/evx181

By:

Costa-Paiva, Elisa M.;
Schrago, Carlos G.;
Halanych, Kenneth M.

Publication type:

Article

Multispecies Coalescent Analysis of the Early Diversification of Neotropical Primates: Phylogenetic Inference under Strong Gene Trees/Species Tree Conflict.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 11, p. 3105, doi. 10.1093/gbe/evu244

By:

Schrago, Carlos G.;
Menezes, Albert N.;
Furtado, Carolina;
Bonvicino, Cibele R.;
Seuanez, Hector N.

Publication type:

Article

Discovery and evolution of novel hemerythrin genes in annelid worms.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0933-z

By:

Costa-Paiva, Elisa M.;
Whelan, Nathan V.;
Waits, Damien S.;
Santos, Scott R.;
Schrago, Carlos G.;
Halanych, Kenneth M.

Publication type:

Article

The range of sampling times affects Zika virus evolutionary rates and divergence times.

Published in:

Archives of Virology, 2019, v. 164, n. 12, p. 3027, doi. 10.1007/s00705-019-04430-7

By:

Barzilai, Lucia P.;
Schrago, Carlos G.

Publication type:

Article

Employing statistical learning to derive species‐level genetic diversity for mammalian species.

Published in:

Mammal Review, 2020, v. 50, n. 3, p. 240, doi. 10.1111/mam.12192

By:

Schrago, Carlos G.;
Mello, Beatriz

Publication type:

Article

The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.

Published in:

Evolutionary Bioinformatics, 2019, p. 1, doi. 10.1177/1176934319855988

By:

Mello, Beatriz;
Schrago, Carlos G

Publication type:

Article

Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases.

Published in:

Evolutionary Bioinformatics, 2017, n. 13, p. 1, doi. 10.1177/1176934317703401

By:

Rossi, Mariana Fonseca;
Mello, Beatriz;
Schrago, Carlos G.

Publication type:

Article

Impact of the Partitioning Scheme on Divergence Times Inferred from Mammalian Genomic Data Sets.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 207, doi. 10.4137/EBO.S9627

By:

Voloch, Carolina M.;
Schrago, Carlos G.

Publication type:

Article

Testing Synchrony in Historical Biogeography: The Case of New World Primates and Hystricognathi Rodents.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 127, doi. 10.4137/EBO.S9008

By:

Loss-Oliveira, Leticia;
Aguiar, Barbara O.;
Schrago, Carlos G.

Publication type:

Article

Large ancestral effective population size explains the difficult phylogenetic placement of owl monkeys.

Published in:

American Journal of Primatology, 2019, v. 81, n. 3, p. N.PAG, doi. 10.1002/ajp.22955

By:

Schrago, Carlos G.;
Seuánez, Hector N.

Publication type:

Article

Functional Copies of the Mst77F Gene on the Y Chromosome of Drosophila melanogaster.

Published in:

Genetics, 2010, v. 184, n. 1, p. 295, doi. 10.1534/genetics.109.107516

By:

Krsticevic, Flavia J.;
Santos, Henrique L.;
Januário, Suelen;
Schrago, Carlos G.;
Carvalho, A. Bernardo

Publication type:

Article

The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.

Published in:

Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319855988

By:

Mello, Beatriz;
Schrago, Carlos G

Publication type:

Article

The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.

Published in:

Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319855988

By:

Mello, Beatriz;
Schrago, Carlos G

Publication type:

Article

A time-calibrated phylogeny of the diversification of Holoadeninae frogs.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1441373

By:

Chaves, Júlio C. M.;
Hepp, Fábio;
Schrago, Carlos G.;
Mello, Beatriz

Publication type:

Article

Multispecies coalescent analysis confirms standing phylogenetic instability in Hexapoda.

Published in:

Journal of Evolutionary Biology, 2018, v. 31, n. 11, p. 1623, doi. 10.1111/jeb.13355

By:

FREITAS, LUCAS;
MELLO, BEATRIZ;
SCHRAGO, CARLOS G.

Publication type:

Article

Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data.

Published in:

Journal of Evolutionary Biology, 2018, v. 31, n. 10, p. 1477, doi. 10.1111/jeb.13344

By:

Schrago, Carlos G.;
Aguiar, Barbara O.;
Mello, Beatriz

Publication type:

Article

Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes.

Published in:

BMC Genetics, 2010, v. 11, p. 38, doi. 10.1186/1471-2156-11-38

By:

Boldt, Angelica B. W.;
Messias-Reason, Iara J.;
Meyer, Diogo;
Schrago, Carlos G.;
Lang, Florian;
Lell, Bertrand;
Dietz, Klaus;
Kremsner, Peter G.;
Luiza Petzl-Erler, Maria;
Kun, Jürgen F. J.

Publication type:

Article

MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies.

Published in:

Bioinformatics, 2005, v. 21, n. 10, p. 2566

By:

Ana Tereza R. de Vasconcelos;
Ana Carolina R. Guimarães;
Carlos Henrique M. Castelletti;
Célia S. Caruso;
Cristina Ribeiro;
Fabiano Yokaichiya;
Geraldo R. G. Armôa;
Gislaine da Silva P. Pereira;
Israel T. da Silva;
Carlos G. Schrago;
Adélia L. V. Fernandes;
Aline R. da Silveira;
André G. Carneiro;
Bruno M. Carvalho;
Carlos J. M. Viana;
Daniel Gramkow;
Franklin J. Lima;
Luiz G. G. Corrêa;
Maurício de A. Mudado;
Pablo Nehab-Hess

Publication type:

Article

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome.

Published in:

G3: Genes | Genomes | Genetics, 2015, v. 5, n. 6, p. 1145, doi. 10.1534/g3.115.017277

By:

Krsticevic, Flavia J.;
Schrago, Carlos G.;
Carvalho, A. Bernardo

Publication type:

Article

Sigmodontine rodents diversified in South America prior to the complete rise of the Panamanian Isthmus.

Published in:

Journal of Zoological Systematics & Evolutionary Research, 2014, v. 52, n. 3, p. 249, doi. 10.1111/jzs.12057

By:

Vilela, Júlio F.;
Mello, Beatriz;
Voloch, Carolina M.;
Schrago, Carlos G.

Publication type:

Article

The Effective Population Sizes of the Anthropoid Ancestors of the Human–Chimpanzee Lineage Provide Insights on the Historical Biogeography of the Great Apes.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 1, p. 37, doi. 10.1093/molbev/mst191

By:

Schrago, Carlos G.

Publication type:

Article

Timing the Origin of New World Monkeys.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 10, p. 1620, doi. 10.1093/molbev/msg172

By:

Schrago, Carlos G.;
Russo, Claudia A. M.

Publication type:

Article

Fast speciations and slow genes: uncovering the root of living canids.

Published in:

Biological Journal of the Linnean Society, 2020, v. 129, n. 2, p. 492, doi. 10.1093/biolinnean/blz181

By:

Lamarca, Alessandra P;
Schrago, Carlos G

Publication type:

Article

Comparative evaluation of macroevolutionary regimes of Ruminantia and selected mammalian lineages.

Published in:

Biological Journal of the Linnean Society, 2018, v. 123, n. 4, p. 814, doi. 10.1093/biolinnean/bly009

By:

Rossi, Mariana F;
Mello, Beatriz;
Schrago, Carlos G

Publication type:

Article

Appropriate Assignment of Fossil Calibration Information Minimizes the Difference between Phylogenetic and Pedigree Mutation Rates in Humans.

Published in:

Life (2075-1729), 2018, v. 8, n. 4, p. 49, doi. 10.3390/life8040049

By:

Capellão, Renata T.;
Costa-Paiva, Elisa M.;
Schrago, Carlos G.

Publication type:

Article

Phylogeny and chronology of the major lineages of New World hystricognath rodents: insights on the biogeography of the Eocene/Oligocene arrival of mammals in South America.

Published in:

BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-160

By:

Voloch, Carolina M.;
Vilela, Julio F.;
Loss-Oliveira, Leticia;
Schrago, Carlos G.

Publication type:

Article

Analysis of Adaptive Evolution in Lyssavirus Genomes Reveals Pervasive Diversifying Selection during Species Diversification.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 11, p. 4465, doi. 10.3390/v6114465

By:

Voloch, Carolina M.;
Capellão, Renata T.;
Mello, Beatriz;
Schrago, Carlos G.

Publication type:

Article

Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae).

Published in:

PLoS Neglected Tropical Diseases, 2016, v. 10, n. 4, p. 1, doi. 10.1371/journal.pntd.0004527

By:

Justi, Silvia A.;
Galvão, Cleber;
Schrago, Carlos G.

Publication type:

Article

Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134462

By:

Freitas, Lucas A.;
Russo, Claudia A. M.;
Voloch, Carolina M.;
Mutaquiha, Olívio C. F.;
Marques, Lucas P.;
Schrago, Carlos G.

Publication type:

Article

Chronology of Deep Nodes in the Neotropical Primate Phylogeny: Insights from Mitochondrial Genomes.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051699

By:

Schrago, Carlos G.;
Menezes, Albert N.;
Moreira, Miguel A. M.;
Pissinatti, Alcides;
Seuánez, Hector N.

Publication type:

Article

Phylogenetic Status and Timescale for the Diversification of Steno and Sotalia Dolphins.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028297

By:

Cunha, Haydeé A.;
Moraes, Lucas C.;
Medeiros, Bruna V.;
Lailson-Brito Jr., José;
Silva, Vera M. F. da;
Solé-Cava, Antonio M.;
Schrago, Carlos G.

Publication type:

Article

Evolution of the B3 DNA Binding Superfamily: New Insights into REM Family Gene Diversification.

Published in:

PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005791

By:

Romanel, Elisson A. C.;
Schrago, Carlos G.;
Couñago, Rafael M.;
Russo, Claudia A. M.;
Alves-Ferreira, Márcio

Publication type:

Article

Redescription and Phylogenetic Position of Condylostoma arenarium Spiegel, 1926 (Ciliophora, Heterotrichea) from Guanabara Bay, Brazil.

Published in:

Journal of Eukaryotic Microbiology, 2015, v. 62, n. 6, p. 722, doi. 10.1111/jeu.12228

By:

Fernandes, Noemi M.;
Dias, Roberto J. P.;
Schrago, Carlos G.;
Silva‐Neto, Inácio D.

Publication type:

Article

Morphology and Phylogenetic Position of an Unusual Stentor polymorphus (Ciliophora: Heterotrichea) Without Symbiotic Algae.

Published in:

Journal of Eukaryotic Microbiology, 2014, v. 61, n. 3, p. 305, doi. 10.1111/jeu.12108

By:

Fernandes, Noemi M.;
da Silva Neto, Inácio Domingos;
Schrago, Carlos G.

Publication type:

Article

Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 4, p. 2255, doi. 10.1002/ece3.4921

By:

Caldas, Ian V.;
Schrago, Carlos G.

Publication type:

Article

Incomplete lineage sorting impacts the inference of macroevolutionary regimes from molecular phylogenies when concatenation is employed: An analysis based on Cetacea.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 14, p. 6965, doi. 10.1002/ece3.4212

By:

Pereira, Anieli G.;
Schrago, Carlos G.

Publication type:

Article

Incorrect handling of calibration information in divergence time inference: an example from volcanic islands.

Published in:

Ecology & Evolution (20457758), 2012, v. 2, n. 3, p. 493, doi. 10.1002/ece3.94

By:

Mello, Beatriz;
Schrago, Carlos G.

Publication type:

Article

The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes.

Published in:

Bioinformatics & Biology Insights, 2012, n. 6, p. 129, doi. 10.4137/BBI.S9677

By:

Soares, André E. R.;
Schrago, Carlos G.

Publication type:

Article

Molecular systematics reveals the origins of subsociality in tortoise beetles (Coleoptera, Chrysomelidae, Cassidinae).

Published in:

Systematic Entomology, 2020, v. 45, n. 4, p. 894, doi. 10.1111/syen.12434

By:

Leocádio, Michele;
Simões, Marianna V. P.;
Sekerka, Lukas;
Schrago, Carlos G.;
Mermudes, José R. M.;
Windsor, Donald M.

Publication type:

Article

Phylogenetic analysis of the ATP-binding cassette proteins suggests a new ABC protein subfamily J in Aedes aegypti (Diptera: Culicidae).

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06873-8

By:

Figueira-Mansur, Janaina;
Schrago, Carlos G.;
Salles, Tiago S.;
Alvarenga, Evelyn S. L.;
Vasconcellos, Brenda M.;
Melo, Ana Claudia A.;
Moreira, Monica F.

Publication type:

Article