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Uncovering the architecture of selection in two Bos taurus cattle breeds.
- Published in:
- Evolutionary Applications, 2024, v. 17, n. 2, p. 1, doi. 10.1111/eva.13666
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- Article
Genomic loci involved in sensing environmental cues and metabolism affect seasonal coat shedding in Bos taurus and Bos indicus cattle.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 2, p. 1, doi. 10.1093/g3journal/jkad279
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- Publication type:
- Article
The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species.
- Published in:
- 2023
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- Publication type:
- Letter
Evidence of rare misassemblies in the bovine reference genome revealed by population genetic metrics.
- Published in:
- Animal Genetics, 2022, v. 53, n. 4, p. 498, doi. 10.1111/age.13205
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- Publication type:
- Article
Genome-wide association and genotype by environment interactions for growth traits in U.S. Red Angus cattle.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08667-6
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- Publication type:
- Article
Exploring genetic variation and population structure in a threatened species, Noturus placidus, with whole-genome sequence data.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 4, p. 1, doi. 10.1093/g3journal/jkac046
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- Publication type:
- Article
Taurine and Indicine Haplotype Representation in Advanced Generation Individuals From Three American Breeds.
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- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.758394
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- Article
Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle.
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- PLoS Genetics, 2021, v. 17, n. 7, p. 1, doi. 10.1371/journal.pgen.1009652
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- Publication type:
- Article
Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92455-x
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- Publication type:
- Article
Spliced genes in muscle from Nelore Cattle and their association with carcass and meat quality.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71783-4
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- Publication type:
- Article
De novo assembly of the cattle reference genome with single-molecule sequencing.
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- GigaScience, 2020, v. 9, n. 3, p. N.PAG, doi. 10.1093/gigascience/giaa021
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- Publication type:
- Article
A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle.
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- Genetics Selection Evolution, 2019, v. 51, n. 1, p. 1, doi. 10.1186/s12711-019-0519-x
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- Publication type:
- Article
Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6231-y
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- Publication type:
- Article
Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation.
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- PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0222329
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- Publication type:
- Article
CRUMBLER: A tool for the prediction of ancestry in cattle.
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- PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0221471
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- Publication type:
- Article
QTL-mapping and genomic prediction for bovine respiratory disease in U.S. Holsteins using sequence imputation and feature selection.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5941-5
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- Publication type:
- Article
Genome-Wide SNP Discovery in Indigenous Cattle Breeds of South Africa.
- Published in:
- Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00273
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- Publication type:
- Article
Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31304-w
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- Publication type:
- Article
Candidate lethal haplotypes and causal mutations in Angus cattle.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4196-2
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- Publication type:
- Article
Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3754-y
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- Publication type:
- Article
Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
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- Scientific Reports, 2017, p. 44345, doi. 10.1038/srep44345
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- Publication type:
- Article
Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis.
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- Scientific Reports, 2017, p. 39719, doi. 10.1038/srep39719
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- Publication type:
- Article
Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.
- Published in:
- Scientific Reports, 2016, p. 39493, doi. 10.1038/srep39493
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- Publication type:
- Article
Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.
- Published in:
- Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0237-6
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- Article
Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.
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- DNA Research, 2016, v. 23, n. 3, p. 253, doi. 10.1093/dnares/dsw013
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- Publication type:
- Article
What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2313-7
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- Publication type:
- Article
The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 20, p. 9600, doi. 10.1093/nar/gkv973
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- Publication type:
- Article
Genome-Wide Scan for Visceral Leishmaniasis in Mixed-Breed Dogs Identifies Candidate Genes Involved in T Helper Cells and Macrophage Signaling.
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- PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0136749
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- Publication type:
- Article
A simple procedure for directly obtaining haplotype sequences of diploid genomes.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1818-4
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- Publication type:
- Article
RAPTR-SV: a hybrid method for the detection of structural variants.
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- Bioinformatics, 2015, v. 31, n. 13, p. 2084, doi. 10.1093/bioinformatics/btv086
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- Publication type:
- Article
Immunological Response to Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex: An RNA-Sequence Analysis of the Bronchial Lymph Node Transcriptome.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131459
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- Article
Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1464-x
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- Publication type:
- Article
Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle.
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- Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-015-0106-8
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- Publication type:
- Article
Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle.
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- Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-014-0083-3
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- Publication type:
- Article
A rare homozygous MFSD8 single-base-pair deletion and frameshift in the whole genome sequence of a Chinese Crested dog with neuronal ceroid lipofuscinosis.
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- BMC Veterinary Research, 2014, v. 10, n. 1, p. 1, doi. 10.1186/s12917-014-0181-z
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- Article
Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility.
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- Animal Health Research Reviews, 2014, v. 15, n. 2, p. 157, doi. 10.1017/S1466252314000231
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- Publication type:
- Article
QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-1004
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- Publication type:
- Article
Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-442
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- Publication type:
- Article
Recombination locations and rates in beef cattle assessed from parent-offspring pairs.
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- Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-34
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- Publication type:
- Article
Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle.
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- PLoS Genetics, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pgen.1004254
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- Publication type:
- Article
Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models.
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- Genetics Selection Evolution, 2013, v. 45, p. 1, doi. 10.1186/1297-9686-45-34
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- Publication type:
- Article
Comparison of molecular breeding values based on within- and across-breed training in beef cattle.
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- Genetics Selection Evolution, 2013, v. 45, p. 1, doi. 10.1186/1297-9686-45-30
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- Publication type:
- Article
Detection of selective sweeps in cattle using genome-wide SNP data.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-382
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- Publication type:
- Article
Accuracy of direct genomic breeding values for nationally evaluated traits in US Limousin and Simmental beef cattle.
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- Genetics Selection Evolution, 2012, v. 44, n. 12, p. 1, doi. 10.1186/1297-9686-44-38
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- Publication type:
- Article
An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle.
- Published in:
- Genetics Research, 2012, v. 94, n. 3, p. 133, doi. 10.1017/S001667231200033X
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- Publication type:
- Article
A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 606, doi. 10.1186/1471-2164-13-606
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- Publication type:
- Article
Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation.
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- Genetics Selection Evolution, 2011, v. 43, n. 11, p. 1, doi. 10.1186/1297-9686-43-40
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- Article
Evolution of the Bovine TLR Gene Family and Member Associations with Mycobacterium avium Subspecies paratuberculosis Infection.
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- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027744
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- Publication type:
- Article
Evaluation of approaches for identifying population informative markers from high density SNP Chips.
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- BMC Genetics, 2011, v. 12, n. 1, p. 45, doi. 10.1186/1471-2156-12-45
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- Publication type:
- Article
Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle.
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- BMC Genetics, 2010, v. 11, p. 24, doi. 10.1186/1471-2156-11-24
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- Article