Works by Schloss, Patrick D.

Results: 29

Quantifying bacterial population dynamics in compost using 16S rRNA gene probes.

Published in:

Applied Microbiology & Biotechnology, 2005, v. 66, n. 4, p. 457, doi. 10.1007/s00253-004-1727-y

By:

Schloss, Patrick D.;
Hay, Anthony G.;
Wilson, David B.;
Goosett, James M.;
Walker, Larry P.

Publication type:

Article

Best practices to evaluate the impact of biomedical research software—metric collection beyond citations.

Published in:

Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae469

By:

Afiaz, Awan;
Ivanov, Andrey A;
Chamberlin, John;
Hanauer, David;
Savonen, Candace L;
Goldman, Mary J;
Morgan, Martin;
Reich, Michael;
Getka, Alexander;
Holmes, Aaron;
Pati, Sarthak;
Knight, Dan;
Boutros, Paul C;
Bakas, Spyridon;
Caporaso, J Gregory;
Fiol, Guilherme Del;
Hochheiser, Harry;
Haas, Brian;
Schloss, Patrick D;
Eddy, James A

Publication type:

Article

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.

Published in:

2015

By:

Beck, James M.;
Schloss, Patrick D.;
Venkataraman, Arvind;
Twigg III, Homer;
Jablonski, Kathleen A.;
Bushman, Frederic D.;
Campbell, Thomas B.;
Charlson, Emily S.;
Collman, Ronald G.;
Crothers, Kristina;
Curtis, Jeffrey L.;
Drews, Kimberly L.;
Flores, Sonia C.;
Fontenot, Andrew P.;
Foulkes, Mary A.;
Frank, Ian;
Ghedin, Elodie;
Huang, Laurence;
Lynch, Susan V.;
Morris, Alison

Publication type:

journal article

Psychrotrophic Strain of Janthinobacterium lividum from a Cold Alaskan Soil Produces Prodigiosin.

Published in:

DNA & Cell Biology, 2010, v. 29, n. 9, p. 533, doi. 10.1089/dna.2010.1020

By:

Schloss, Patrick D.;
Allen, Heather K.;
Klimowicz, Amy K.;
Mlot, Christine;
Gross, Jessica A.;
Savengsuksa, Sarah;
McEllin, Jennifer;
Clardy, Jon;
Ruess, Roger W.;
Handelsman, Jo

Publication type:

Article

The ASM Journals Committee Values the Contributions of Black Microbiologists.

Published in:

Molecular & Cellular Biology, 2020, v. 40, n. 19, p. 1, doi. 10.1128/MCB.00356-20

By:

Schloss, Patrick D.;
Junior, Melissa;
Alvania, Rebecca;
Arias, Cesar A.;
Baumler, Andreas;
Casadevall, Arturo;
Detweiler, Corrella;
Drake, Harold;
Gilbert, Jack;
Imperiale, Michael J.;
Lovett, Susan;
Maloy, Stanley;
McAdam, Alexander J.;
Newton, Irene L. G.;
Sadowsky, Michael J.;
Sandri-Goldin, Rozanne M.;
Silhavy, Thomas J.;
Tontonoz, Peter;
Young, Jo-Anne H.;
Cameron, Craig E.

Publication type:

Article

Stabilization of the murine gut microbiome following weaning.

Published in:

Gut Microbes, 2012, v. 3, n. 4, p. 1, doi. 10.4161/gmic.21008

By:

Schloss, Patrick D.;
Schubert, Alyxandria M.;
Zackular, Joseph P.;
Iverson, Kathryn D.;
Young, Vincent B.;
Petrosino, Joseph F.

Publication type:

Article

Comparison of the respiratory microbiome in healthy nonsmokers and smokers.

Published in:

2013

By:

Morris, Alison;
Beck, James M;
Schloss, Patrick D;
Campbell, Thomas B;
Crothers, Kristina;
Curtis, Jeffrey L;
Flores, Sonia C;
Fontenot, Andrew P;
Ghedin, Elodie;
Huang, Laurence;
Jablonski, Kathleen;
Kleerup, Eric;
Lynch, Susan V;
Sodergren, Erica;
Twigg, Homer;
Young, Vincent B;
Bassis, Christine M;
Venkataraman, Arvind;
Schmidt, Thomas M;
Weinstock, George M

Publication type:

journal article

Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers.

Published in:

American Journal of Respiratory & Critical Care Medicine, 2013, v. 187, n. 10, p. 1067, doi. 10.1164/rccm.201210-1913oc

By:

Morris, Alison;
Beck, James M.;
Schloss, Patrick D.;
Campbell, Thomas B.;
Crothers, Kristina;
Curtis, Jeffrey L.;
Flores, Sonia C.;
Fontenot, Andrew P.;
Ghedin, Elodie;
Huang, Laurence;
Jablonski, Kathleen;
Kleerup, Eric;
Lynch, Susan V.;
Sodergren, Erica;
Twigg, Homer;
Young, Vincent B.;
Bassis, Christine M.;
Venkataraman, Arvind;
Schmidt, Thomas M.;
Weinstock, George M.

Publication type:

Article

Toward a Census of Bacteria in Soil.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 7, p. e92, doi. 10.1371/journal.pcbi.0020092

By:

Schloss, Patrick D.;
Handelsman, Jo

Publication type:

Article

54101 Characterizing Microbiota Features of Clostridioides difficile Infections.

Published in:

2021

By:

Tomkovich, Sarah;
Rao, Krishna;
Young, Vincent B.;
Schloss, Patrick D.

Publication type:

Abstract

Association of bacterial community types, functional microbial processes and lung disease in cystic fibrosis airways.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 4, p. 905, doi. 10.1038/s41396-021-01129-z

By:

Widder, Stefanie;
Zhao, Jiangchao;
Carmody, Lisa A.;
Zhang, Qingyang;
Kalikin, Linda M.;
Schloss, Patrick D.;
LiPuma, John J.

Publication type:

Article

Secondary structure improves OTU assignments of 16S rRNA gene sequences.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 3, p. 457, doi. 10.1038/ismej.2012.102

By:

Schloss, Patrick D

Publication type:

Article

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 12, p. 2257, doi. 10.1038/ismej.2012.63

By:

Lesniewski, Ryan A;
Jain, Sunit;
Anantharaman, Karthik;
Schloss, Patrick D;
Dick, Gregory J

Publication type:

Article

Evaluating different approaches that test whether microbial communities have the same structure.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2008, v. 2, n. 3, p. 265, doi. 10.1038/ismej.2008.5

By:

Schloss, Patrick D.

Publication type:

Article

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-34

By:

Schloss, Patrick D.;
Handelsman, Jo

Publication type:

Article

Bioinformatics for the Human Microbiome Project.

Published in:

2012

By:

Gevers, Dirk;
Pop, Mihai;
Schloss, Patrick D.;
Huttenhower, Curtis

Publication type:

Opinion

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002358

By:

Abubucker, Sahar;
Segata, Nicola;
Goll, Johannes;
Schubert, Alyxandria M.;
Izard, Jacques;
Cantarel, Brandi L.;
Rodriguez-Mueller, Beltran;
Zucker, Jeremy;
Thiagarajan, Mathangi;
Henrissat, Bernard;
White, Owen;
Kelley, Scott T.;
Methé, Barbara;
Schloss, Patrick D.;
Gevers, Dirk;
Mitreva, Makedonka;
Huttenhower, Curtis

Publication type:

Article

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000844

By:

Schloss, Patrick D.

Publication type:

Article

Normalization of the microbiota in patients after treatment for colonic lesions.

Published in:

Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0366-3

By:

Sze, Marc A.;
Baxter, Nielson T.;
Ruffin IV, Mack T.;
Rogers, Mary A. M.;
Schloss, Patrick D.

Publication type:

Article

DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model.

Published in:

Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0205-y

By:

Baxter, Nielson T.;
Koumpouras, Charles C.;
Rogersv, Mary A. M.;
Ruffin IV, Mack T.;
Schloss, Patrick D.

Publication type:

Article

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0074-9

By:

Carmody, Lisa A.;
Jiangchao Zhao;
Kalikin, Linda M.;
Bar, William Le;
Simon, Richard H.;
Venkataraman, Arvind;
Schmidt, Thomas M.;
Abdo, Zaid;
Schloss, Patrick D.;
LiPuma, John J.

Publication type:

Article

Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions.

Published in:

Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0290-3

By:

Baxter, Nielson T.;
Ruffin IV, Mack T.;
Rogers, Mary A. M.;
Schloss, Patrick D.

Publication type:

Article

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006099

By:

Hannigan, Geoffrey D.;
Schloss, Patrick D.;
Duhaime, Melissa B.;
Koutra, Danai

Publication type:

Article

Impact of Enhanced Staphylococcus DNA Extraction on Microbial Community Measures in Cystic Fibrosis Sputum.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033127

By:

Jiangchao Zhao;
Carmody, Lisa A.;
Kalikin, Linda M.;
Jun Li;
Petrosino, Joseph F.;
Schloss, Patrick D.;
Young, Vincent B.;
LiPuma, John J.

Publication type:

Article

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0027310

By:

Schloss, Patrick D.;
Gevers, Dirk;
Westcott, Sarah L.

Publication type:

Article

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies.

Published in:

PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0008230

By:

Schloss, Patrick D.

Publication type:

Article

Ten simple rules to increase computational skills among biologists with Code Clubs.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 8, p. 1, doi. 10.1371/journal.pcbi.1008119

By:

Hagan, Ada K.;
Lesniak, Nicholas A.;
Balunas, Marcy J.;
Bishop, Lucas;
Close, William L.;
Doherty, Matthew D.;
Elmore, Amanda G.;
Flynn, Kaitlin J.;
Hannigan, Geoffrey D.;
Koumpouras, Charlie C.;
Jenior, Matthew L.;
Kozik, Ariangela J.;
McBride, Kathryn;
Rifkin, Samara B.;
Stough, Joshua M. A.;
Sovacool, Kelly L.;
Sze, Marc A.;
Tomkovich, Sarah;
Topcuoglu, Begum D.;
Schloss, Patrick D.

Publication type:

Article

Dynamics and associations of microbial community types across the human body.

Published in:

Nature, 2014, v. 509, n. 7500, p. 357, doi. 10.1038/nature13178

By:

Ding, Tao;
Schloss, Patrick D.

Publication type:

Article

Microbiology: An integrated view of the skin microbiome.

Published in:

Nature, 2014, v. 514, n. 7520, p. 44, doi. 10.1038/514044a

By:

Schloss, Patrick D.

Publication type:

Article