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Cathodoluminescence and Friends to Study Defects in UV Emitters.
Published in:
Microscopy & Microanalysis, 2024, v. 30, p. 1, doi. 10.1093/mam/ozae044.004
By:
- Cameron, Douglas;
- Schilling, Marcel;
- Kusch, Gunnar;
- Edwards, Paul R;
- Spulis, Viesturs;
- Wernicke, Tim;
- Kneissl, Michael;
- Oliver, Rachel A;
- Martin, Robert W
Publication type:
Article
Deciphering signal transduction networks in the liver by mechanistic mathematical modelling.
Published in:
Biochemical Journal, 2022, v. 479, n. 12, p. 1361, doi. 10.1042/BCJ20210548
By:
- D'Alessandro, Lorenza A.;
- Klingmüller, Ursula;
- Schilling, Marcel
Publication type:
Article
Automated high-throughput image processing as part of the screening platform for personalized oncology.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32144-z
By:
- Schilling, Marcel P.;
- El Khaled El Faraj, Razan;
- Urrutia Gómez, Joaquín Eduardo;
- Sonnentag, Steffen J.;
- Wang, Fei;
- Nestler, Britta;
- Orian-Rousseau, Véronique;
- Popova, Anna A.;
- Levkin, Pavel A.;
- Reischl, Markus
Publication type:
Article
Context-specific flow through the MEK/ERK module produces cell- and ligand-specific patterns of ERK single and double phosphorylation.
Published in:
Science Signaling, 2016, v. 9, n. 413, p. 1, doi. 10.1126/scisignal.aab1967
By:
- Iwamoto, Nao;
- D'Alessandro, Lorenza A.;
- Depner, Sofia;
- Hahn, Bettina;
- Kramer, Bernhard A.;
- Lucarelli, Philippe;
- Vlasov, Artyom;
- Stepath, Markus;
- Böhm, Martin E.;
- Deharde, Daniela;
- Damm, Georg;
- Seehofer, Daniel;
- Lehmann, Wolf D.;
- Klingmüller, Ursula;
- Schilling, Marcel
Publication type:
Article
Computational processing and error reduction strategies for standardized quantitative data in biological networks.
Published in:
FEBS Journal, 2005, v. 272, n. 24, p. 6400, doi. 10.1111/j.1742-4658.2005.05037.x
By:
- Schilling, Marcel;
- Maiwald, Thomas;
- Bohl, Sebastian;
- Kollmann, Markus;
- Kreutz, Clemens;
- Timmer, Jens;
- Klingmüller, Ursula
Publication type:
Article
Lessons Learned from Quantitative Dynamical Modeling in Systems Biology.
Published in:
PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074335
By:
- Raue, Andreas;
- Schilling, Marcel;
- Bachmann, Julie;
- Matteson, Andrew;
- Schelke, Max;
- Kaschek, Daniel;
- Hug, Sabine;
- Kreutz, Clemens;
- Harms, Brian D.;
- Theis, Fabian J.;
- Klingmüller, Ursula;
- Timmer, Jens
Publication type:
Article
Differential microRNA expression analyses across two brain regions in Alzheimer's disease.
Published in:
Translational Psychiatry, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41398-022-02108-4
By:
- Dobricic, Valerija;
- Schilling, Marcel;
- Schulz, Jessica;
- Zhu, Ling-Shuang;
- Zhou, Chao-Wen;
- Fuß, Janina;
- Franzenburg, Sören;
- Zhu, Ling-Qiang;
- Parkkinen, Laura;
- Lill, Christina M.;
- Bertram, Lars
Publication type:
Article
KaIDA: a modular tool for assisting image annotation in deep learning.
Published in:
Journal of Integrative Bioinformatics, 2022, v. 19, n. 4, p. 1, doi. 10.1515/jib-2022-0018
By:
- Schilling, Marcel P.;
- Schmelzer, Svenja;
- Klinger, Lukas;
- Reischl, Markus
Publication type:
Article
A Dynamic Model for Prediction of Psoriasis Management by Blue Light Irradiation.
Published in:
Frontiers in Physiology, 2017, v. 8, p. 1, doi. 10.3389/fphys.2017.00028
By:
- Garza, Zandra C. Félix;
- Liebmann, Joerg;
- Born, Matthias;
- Hilbers, Peter A. J.;
- van Riel, Natal A. W.;
- Schilling, Marcel;
- Tianhui Niu
Publication type:
Article
Basal MET phosphorylation is an indicator of hepatocyte dysregulation in liver disease.
Published in:
Molecular Systems Biology, 2024, v. 20, n. 3, p. 187, doi. 10.1038/s44320-023-00007-4
By:
- Burbano de Lara, Sebastian;
- Kemmer, Svenja;
- Biermayer, Ina;
- Feiler, Svenja;
- Vlasov, Artyom;
- D'Alessandro, Lorenza A;
- Helm, Barbara;
- Mölders, Christina;
- Dieter, Yannik;
- Ghallab, Ahmed;
- Hengstler, Jan G;
- Körner, Christiane;
- Matz-Soja, Madlen;
- Götz, Christina;
- Damm, Georg;
- Hoffmann, Katrin;
- Seehofer, Daniel;
- Berg, Thomas;
- Schilling, Marcel;
- Timmer, Jens
Publication type:
Article
SLAM‐Drop‐seq reveals mRNA kinetic rates throughout the cell cycle.
Published in:
Molecular Systems Biology, 2023, v. 19, n. 10, p. 1, doi. 10.15252/msb.202211427
By:
- Liu, Haiyue;
- Arsiè, Roberto;
- Schwabe, Daniel;
- Schilling, Marcel;
- Minia, Igor;
- Alles, Jonathan;
- Boltengagen, Anastasiya;
- Kocks, Christine;
- Falcke, Martin;
- Friedman, Nir;
- Landthaler, Markus;
- Rajewsky, Nikolaus
Publication type:
Article
Disentangling molecular mechanisms regulating sensitization of interferon alpha signal transduction.
Published in:
Molecular Systems Biology, 2020, v. 16, n. 7, p. 1, doi. 10.15252/msb.20198955
By:
- Kok, Frédérique;
- Rosenblatt, Marcus;
- Teusel, Melissa;
- Nizharadze, Tamar;
- Gonçalves Magalhães, Vladimir;
- Dächert, Christopher;
- Maiwald, Tim;
- Vlasov, Artyom;
- Wäsch, Marvin;
- Tyufekchieva, Silvana;
- Hoffmann, Katrin;
- Damm, Georg;
- Seehofer, Daniel;
- Boettler, Tobias;
- Binder, Marco;
- Timmer, Jens;
- Schilling, Marcel;
- Klingmüller, Ursula
Publication type:
Article
Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation.
Published in:
Molecular Systems Biology, 2017, v. 13, n. 1, p. n/a, doi. 10.15252/msb.20167258
By:
- Adlung, Lorenz;
- Kar, Sandip;
- Wagner, Marie‐Christine;
- She, Bin;
- Chakraborty, Sajib;
- Bao, Jie;
- Lattermann, Susen;
- Boerries, Melanie;
- Busch, Hauke;
- Wuchter, Patrick;
- Ho, Anthony D;
- Timmer, Jens;
- Schilling, Marcel;
- Höfer, Thomas;
- Klingmüller, Ursula
Publication type:
Article
T160-phosphorylated CDK2 defines threshold for HGF-dependent proliferation in primary hepatocytes.
Published in:
Molecular Systems Biology, 2015, v. 11, n. 3, p. n/a, doi. 10.15252/msb.20156032
By:
- Mueller, Stephanie;
- Huard, Jérémy;
- Waldow, Katharina;
- Huang, Xiaoyun;
- D'Alessandro, Lorenza A;
- Bohl, Sebastian;
- Börner, Kathleen;
- Grimm, Dirk;
- Klamt, Steffen;
- Klingmüller, Ursula;
- Schilling, Marcel
Publication type:
Article
Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range.
Published in:
Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.50
By:
- Bachmann, Julie;
- Raue, Andreas;
- Schilling, Marcel;
- Böhm, Martin E;
- Kreutz, Clemens;
- Kaschek, Daniel;
- Busch, Hauke;
- Gretz, Norbert;
- Lehmann, Wolf D;
- Timmer, Jens;
- Klingmüller, Ursula
Publication type:
Article
Theoretical and experimental analysis links isoform- specific ERK signalling to cell fate decisions.
Published in:
Molecular Systems Biology, 2009, v. 5, n. 1, p. 334, doi. 10.1038/msb.2009.91
By:
- Schilling, Marcel;
- Maiwald, Thomas;
- Hengl, Stefan;
- Winter, Dominic;
- Kreutz, Clemens;
- Kolch, Walter;
- Lehmann, Wolf D;
- Timmer, Jens;
- Klingmüller, Ursula
Publication type:
Article
Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling.
Published in:
PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004192
By:
- D’Alessandro, Lorenza A.;
- Samaga, Regina;
- Maiwald, Tim;
- Rho, Seong-Hwan;
- Bonefas, Sandra;
- Raue, Andreas;
- Iwamoto, Nao;
- Kienast, Alexandra;
- Waldow, Katharina;
- Meyer, Rene;
- Schilling, Marcel;
- Timmer, Jens;
- Klamt, Steffen;
- Klingmüller, Ursula
Publication type:
Article
Model-based identification of TNFα-induced IKKβ-mediated and IκBα-mediated regulation of NFκB signal transduction as a tool to quantify the impact of drug-induced liver injury compounds.
Published in:
NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-018-0058-z
By:
- Oppelt, Angela;
- Kaschek, Daniel;
- Huppelschoten, Suzanna;
- Sison-Young, Rowena;
- Zhang, Fang;
- Buck-Wiese, Marie;
- Herrmann, Franziska;
- Malkusch, Sebastian;
- Krüger, Carmen L.;
- Meub, Mara;
- Merkt, Benjamin;
- Zimmermann, Lea;
- Schofield, Amy;
- Jones, Robert P.;
- Malik, Hassan;
- Schilling, Marcel;
- Heilemann, Mike;
- van de Water, Bob;
- Goldring, Christopher E.;
- Park, B. Kevin
Publication type:
Article
Genome-wide meta-analysis of short-tandem repeats for Parkinson's disease risk using genotype imputation.
Published in:
Brain Communications, 2024, v. 6, n. 3, p. 1, doi. 10.1093/braincomms/fcae146
By:
- Ohlei, Olena;
- Paul, Kimberly;
- Nielsen, Susan Searles;
- Gmelin, David;
- Dobricic, Valerija;
- Altmann, Vivian;
- Schilling, Marcel;
- Bronstein, Jeff M;
- Franke, Andre;
- Wittig, Michael;
- Parkkinen, Laura;
- Hansen, Johnni;
- Checkoway, Harvey;
- Ritz, Beate;
- Bertram, Lars;
- Lill, Christina M
Publication type:
Article
Common signatures of differential microRNA expression in Parkinson's and Alzheimer's disease brains.
Published in:
Brain Communications, 2022, v. 4, n. 6, p. 1, doi. 10.1093/braincomms/fcac274
By:
- Dobricic, Valerija;
- Schilling, Marcel;
- Farkas, Ildiko;
- Gveric, Djordje O.;
- Ohlei, Olena;
- Schulz, Jessica;
- Middleton, Lefkos;
- Gentleman, Steve M.;
- Parkkinen, Laura;
- Bertram, Lars;
- Lill, Christina M.
Publication type:
Article
Annotation Efforts in Image Segmentation can be Reduced by Neural Network Bootstrapping.
Published in:
Current Directions in Biomedical Engineering, 2022, v. 8, n. 2, p. 329, doi. 10.1515/cdbme-2022-1084
By:
- Rettenberger, Luca;
- Schilling, Marcel;
- Reischl, Markus
Publication type:
Article
Impact of Annotation Noise on Histopathology Nucleus Segmentation.
Published in:
Current Directions in Biomedical Engineering, 2022, v. 8, n. 2, p. 197, doi. 10.1515/cdbme-2022-1051
By:
- Schilling, Marcel P.;
- Ahuja, Niket;
- Rettenberger, Luca;
- Scherr, Tim;
- Reischl, Markus
Publication type:
Article
Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells.
Published in:
PLoS Computational Biology, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005049
By:
- Merkle, Ruth;
- Steiert, Bernhard;
- Salopiata, Florian;
- Depner, Sofia;
- Raue, Andreas;
- Iwamoto, Nao;
- Schelker, Max;
- Hass, Helge;
- Wäsch, Marvin;
- Böhm, Martin E.;
- Mücke, Oliver;
- Lipka, Daniel B.;
- Plass, Christoph;
- Lehmann, Wolf D.;
- Kreutz, Clemens;
- Timmer, Jens;
- Schilling, Marcel;
- Klingmüller, Ursula
Publication type:
Article
MicroRNAs as Molecular Biomarkers for Parkinson's Disease Progression.
Published in:
2021
By:
- Schilling, Marcel;
- Lill, Christina M.
Publication type:
journal article
Epigenome-Wide Association Study in Peripheral Tissues Highlights DNA Methylation Profiles Associated with Episodic Memory Performance in Humans.
Published in:
Biomedicines, 2022, v. 10, n. 11, p. 2798, doi. 10.3390/biomedicines10112798
By:
- Sommerer, Yasmine;
- Dobricic, Valerija;
- Schilling, Marcel;
- Ohlei, Olena;
- Bartrés-Faz, David;
- Cattaneo, Gabriele;
- Demuth, Ilja;
- Düzel, Sandra;
- Franzenburg, Sören;
- Fuß, Janina;
- Lindenberger, Ulman;
- Pascual-Leone, Álvaro;
- Sabet, Sanaz Sedghpour;
- Solé-Padullés, Cristina;
- Tormos, Josep M.;
- Vetter, Valentin Max;
- Wesse, Tanja;
- Franke, Andre;
- Lill, Christina M.;
- Bertram, Lars
Publication type:
Article
Repurposing FDA‐Approved Drugs for Temozolomide‐Resistant IDH1 Mutant Glioma Using High‐Throughput Miniaturized Screening on Droplet Microarray Chip.
Published in:
Advanced Healthcare Materials, 2023, v. 12, n. 24, p. 1, doi. 10.1002/adhm.202300591
By:
- Cui, Haijun;
- Sun, Xueyuan;
- Schilling, Marcel;
- Herold‐Mende, Christel;
- Reischl, Markus;
- Levkin, Pavel A.;
- Popova, Anna A.;
- Turcan, Şevin
Publication type:
Article
"Cells‐to‐cDNA on Chip": Phenotypic Assessment and Gene Expression Analysis from Live Cells in Nanoliter Volumes Using Droplet Microarrays.
Published in:
Advanced Healthcare Materials, 2022, v. 11, n. 12, p. 1, doi. 10.1002/adhm.202102493
By:
- Chakraborty, Shraddha;
- Luchena, Charlotte;
- Elton, Jonathan J.;
- Schilling, Marcel P.;
- Reischl, Markus;
- Roux, Margaux;
- Levkin, Pavel A.;
- Popova, Anna A.
Publication type:
Article
Entorhinal cortex epigenome-wide association study highlights four novel loci showing differential methylation in Alzheimer's disease.
Published in:
Alzheimer's Research & Therapy, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13195-023-01232-7
By:
- Sommerer, Yasmine;
- Dobricic, Valerija;
- Schilling, Marcel;
- Ohlei, Olena;
- Sabet, Sanaz Sedghpour;
- Wesse, Tanja;
- Fuß, Janina;
- Franzenburg, Sören;
- Franke, Andre;
- Parkkinen, Laura;
- Lill, Christina M.;
- Bertram, Lars
Publication type:
Article
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation.
Published in:
PLoS ONE, 2022, v. 17, n. 11, p. 1, doi. 10.1371/journal.pone.0277601
By:
- Scherr, Tim;
- Seiffarth, Johannes;
- Wollenhaupt, Bastian;
- Neumann, Oliver;
- Schilling, Marcel P.;
- Kohlheyer, Dietrich;
- Scharr, Hanno;
- Nöh, Katharina;
- Mikut, Ralf
Publication type:
Article
Comprehensive Research Synopsis and Systematic Meta-Analyses in Parkinson's Disease Genetics: The PDGene Database.
Published in:
PLoS Genetics, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pgen.1002548
By:
- M. Lill, Christina;
- Roehr, Johannes T.;
- McQueen, Matthew B.;
- Kavvoura, Fotini K.;
- Bagade, Sachin;
- Schjeide, Brit-Maren M.;
- Schjeide, Leif M.;
- Meissner, Esther;
- Zauft, Ute;
- Allen, Nicole C.;
- Liu, Tian;
- Schilling, Marcel;
- Anderson, Kari J.;
- Beecham, Gary;
- Berg, Daniela;
- Biernacka, Joanna M.;
- Brice, Alexis;
- DeStefano, Anita L.;
- Do, Chuong B.;
- Eriksson, Nicholas
Publication type:
Article
MSPypeline: a python package for streamlined data analysis of mass spectrometry-based proteomics.
Published in:
Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac004
By:
- Heming, Simon;
- Hansen, Pauline;
- Vlasov, Artyom;
- Schwörer, Florian;
- Schaumann, Stephen;
- Frolovaitė, Paulina;
- Lehmann, Wolf-Dieter;
- Timmer, Jens;
- Schilling, Marcel;
- Helm, Barbara;
- Klingmüller, Ursula
Publication type:
Article
Short-term information processing, long-term responses: Insights by mathematical modeling of signal transduction.
Published in:
BioEssays, 2012, v. 34, n. 7, p. 542, doi. 10.1002/bies.201100172
By:
- Schneider, Annette;
- Klingmüller, Ursula;
- Schilling, Marcel
Publication type:
Article
Identification of Interleukin1β as an Amplifier of Interferon alpha-induced Antiviral Responses.
Published in:
PLoS Pathogens, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.ppat.1008461
By:
- Robichon, Katharina;
- Maiwald, Tim;
- Schilling, Marcel;
- Schneider, Annette;
- Willemsen, Joschka;
- Salopiata, Florian;
- Teusel, Melissa;
- Kreutz, Clemens;
- Ehlting, Christian;
- Huang, Jun;
- Chakraborty, Sajib;
- Huang, Xiaoyun;
- Damm, Georg;
- Seehofer, Daniel;
- Lang, Philipp A.;
- Bode, Johannes G.;
- Binder, Marco;
- Bartenschlager, Ralf;
- Timmer, Jens;
- Klingmüller, Ursula
Publication type:
Article
Assessment of microRNA-related SNP effects in the 3′ untranslated region of the IL22RA2 risk locus in multiple sclerosis.
Published in:
Neurogenetics, 2014, v. 15, n. 2, p. 129, doi. 10.1007/s10048-014-0396-y
By:
- Lill, Christina;
- Schilling, Marcel;
- Ansaloni, Sara;
- Schröder, Julia;
- Jaedicke, Marian;
- Luessi, Felix;
- Schjeide, Brit-Maren;
- Mashychev, Andriy;
- Graetz, Christiane;
- Akkad, Denis;
- Gerdes, Lisa-Ann;
- Kroner, Antje;
- Blaschke, Paul;
- Hoffjan, Sabine;
- Winkelmann, Alexander;
- Dörner, Thomas;
- Rieckmann, Peter;
- Steinhagen-Thiessen, Elisabeth;
- Lindenberger, Ulman;
- Chan, Andrew
Publication type:
Article
Evaluierung von Merkmalen zur Abbildung von Veränderungen in ungeordneten Bilddaten.
Published in:
Automatisierungstechnik, 2021, v. 69, n. 10, p. 892, doi. 10.1515/auto-2021-0038
By:
- Münke, Friedrich R.;
- Schilling, Marcel P.;
- Mikut, Ralf;
- Reischl, Markus
Publication type:
Article

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