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ModDotPlot—rapid and interactive visualization of tandem repeats.
- Published in:
- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae493
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- Publication type:
- Article
Concerning the eXclusion in human genomics: the choice of sex chromosome representation in the human genome drastically affects the number of identified variants.
- Published in:
- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 10, p. 1, doi. 10.1093/g3journal/jkad169
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- Publication type:
- Article
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats.
- Published in:
- Genome Biology & Evolution, 2023, v. 15, n. 9, p. 1, doi. 10.1093/gbe/evad148
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- Publication type:
- Article
Characterization of large-scale genomic differences in the first complete human genome.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02995-w
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- Publication type:
- Article
Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05389-8
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- Publication type:
- Article
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like bla<sub>KPC</sub> bearing plasmids.
- Published in:
- JAC-Antimicrobial Resistance, 2023, v. 5, n. 3, p. 1, doi. 10.1093/jacamr/dlad061
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- Publication type:
- Article
Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome.
- Published in:
- Plant Cell, 2023, v. 35, n. 1, p. 351, doi. 10.1093/plcell/koac305
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- Publication type:
- Article
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02823-7
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- Publication type:
- Article
Sketching and sampling approaches for fast and accurate long read classification.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05014-0
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- Publication type:
- Article
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02714-x
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- Publication type:
- Article
Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome.
- Published in:
- Genome Biology & Evolution, 2022, v. 14, n. 5, p. 1, doi. 10.1093/gbe/evac059
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- Publication type:
- Article
Artificial Intelligence and Cardiovascular Genetics.
- Published in:
- Life (2075-1729), 2022, v. 12, n. 2, p. N.PAG, doi. 10.3390/life12020279
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- Publication type:
- Article
High resolution copy number inference in cancer using short-molecule nanopore sequencing.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 21, p. e124, doi. 10.1093/nar/gkab812
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- Publication type:
- Article
Local adaptation and archaic introgression shape global diversity at human structural variant loci.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67615
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- Publication type:
- Article
Cell wall protein variation, break‐induced replication, and subtelomere dynamics in Candida glabrata.
- Published in:
- Molecular Microbiology, 2021, v. 116, n. 1, p. 260, doi. 10.1111/mmi.14707
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- Publication type:
- Article
An anchored chromosome‐scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids.
- Published in:
- Plant Genome, 2021, v. 14, n. 2, p. 1, doi. 10.1002/tpg2.20101
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- Publication type:
- Article
Natural Genetic Diversity in Tomato Flavor Genes.
- Published in:
- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.642828
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- Publication type:
- Article
A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor.
- Published in:
- PLoS Pathogens, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.ppat.1009537
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- Publication type:
- Article
Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED.
- Published in:
- Nature Biotechnology, 2021, v. 39, n. 4, p. 431, doi. 10.1038/s41587-020-0731-9
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- Publication type:
- Article
Sapling: accelerating suffix array queries with learned data models.
- Published in:
- Bioinformatics, 2021, v. 37, n. 6, p. 744, doi. 10.1093/bioinformatics/btaa911
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- Publication type:
- Article
SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.60681
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- Publication type:
- Article
The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.61797
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- Publication type:
- Article
Ribbon: intuitive visualization for complex genomic variation.
- Published in:
- Bioinformatics, 2021, v. 37, n. 3, p. 413, doi. 10.1093/bioinformatics/btaa680
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- Publication type:
- Article
iGenomics: Comprehensive DNA sequence analysis on your Smartphone.
- Published in:
- GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa138
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- Publication type:
- Article
Parliament2: Accurate structural variant calling at scale.
- Published in:
- GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa145
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- Publication type:
- Article
A diploid assembly-based benchmark for variants in the major histocompatibility complex.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18564-9
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- Publication type:
- Article
Vargas: heuristic-free alignment for assessing linear and graph read aligners.
- Published in:
- Bioinformatics, 2020, v. 36, n. 12, p. 3712, doi. 10.1093/bioinformatics/btaa265
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- Publication type:
- Article
In memory of James Taylor: the birth of Galaxy.
- Published in:
- 2020
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- Publication type:
- Editorial
Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.
- Published in:
- Frontiers in Plant Science, 2020, p. 1, doi. 10.3389/fpls.2020.00289
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- Publication type:
- Article
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14998-3
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- Publication type:
- Article
Paragraph: a graph-based structural variant genotyper for short-read sequence data.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1909-7
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- Publication type:
- Article
Recovering rearranged cancer chromosomes from karyotype graphs.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3208-4
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- Publication type:
- Article
RaGOO: fast and accurate reference-guided scaffolding of draft genomes.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1829-6
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- Publication type:
- Article
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
- Published in:
- Nature Biotechnology, 2019, v. 37, n. 10, p. 1155, doi. 10.1038/s41587-019-0217-9
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- Publication type:
- Article
Addressing confounding artifacts in reconstruction of gene co-expression networks.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1700-9
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- Publication type:
- Article
Genome‐wide patterns of transposon proliferation in an evolutionary young hybrid fish.
- Published in:
- Molecular Ecology, 2019, v. 28, n. 6, p. 1491, doi. 10.1111/mec.14969
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- Publication type:
- Article
A multi-task convolutional deep neural network for variant calling in single molecule sequencing.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09025-z
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- Publication type:
- Article
Graph genomes article collection.
- Published in:
- 2019
- By:
- Publication type:
- Editorial
Conservation Genomics of the Declining North American Bumblebee Bombus terricola Reveals Inbreeding and Selection on Immune Genes.
- Published in:
- Frontiers in Genetics, 2018, p. N.PAG, doi. 10.3389/fgene.2018.00316
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- Publication type:
- Article
Antibiotic pressure on the acquisition and loss of antibiotic resistance genes in Klebsiella pneumoniae.
- Published in:
- 2018
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- Publication type:
- journal article
Hybrid assembly with long and short reads improves discovery of gene family expansions.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3927-8
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- Publication type:
- Article
GenomeScope: fast reference-free genome profiling from short reads.
- Published in:
- Bioinformatics, 2017, v. 33, n. 14, p. 2202, doi. 10.1093/bioinformatics/btx153
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- Publication type:
- Article
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model.
- Published in:
- GigaScience, 2017, v. 6, n. 7, p. 1, doi. 10.1093/gigascience/gix045
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- Publication type:
- Article
TGF-β reduces DNA ds-break repair mechanisms to heighten genetic diversity and adaptability of CD44+/CD24− cancer cells.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.21615
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- Publication type:
- Article
Indel variant analysis of short-read sequencing data with Scalpel.
- Published in:
- Nature Protocols, 2016, v. 11, n. 12, p. 2529, doi. 10.1038/nprot.2016.150
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- Publication type:
- Article
Assemblytics: a web analytics tool for the detection of variants from an assembly.
- Published in:
- Bioinformatics, 2016, v. 32, n. 19, p. 3021, doi. 10.1093/bioinformatics/btw369
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- Publication type:
- Article
Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing.
- Published in:
- DNA Research, 2016, v. 23, n. 4, p. 339, doi. 10.1093/dnares/dsw022
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- Publication type:
- Article
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.
- Published in:
- Nature Communications, 2016, v. 7, n. 2, p. 10164, doi. 10.1038/ncomms10164
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- Publication type:
- Article
Interactive analysis and assessment of single-cell copy-number variations.
- Published in:
- Nature Methods, 2015, v. 12, n. 11, p. 1058, doi. 10.1038/nmeth.3578
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- Publication type:
- Article
Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.
- Published in:
- Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0803-1
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- Publication type:
- Article