Works by Schatz, Michael

Results: 162

Big Data: Astronomical or Genomical?

Published in:

PLoS Biology, 2015, v. 13, n. 7, p. 1, doi. 10.1371/journal.pbio.1002195

By:

Stephens, Zachary D.;
Lee, Skylar Y.;
Faghri, Faraz;
Campbell, Roy H.;
Zhai, Chengxiang;
Efron, Miles J.;
Iyer, Ravishankar;
Schatz, Michael C.;
Sinha, Saurabh;
Robinson, Gene E.

Publication type:

Article

Sex differences among children 213 years of age presenting at the emergency department with acute asthma.

Published in:

Pediatric Pulmonology, 2004, v. 37, n. 6, p. 523, doi. 10.1002/ppul.20018

By:

Michael Schatz;
Sunday Clark;
Jennifer A. Emond;
Donald Schreiber

Publication type:

Article

Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like bla<sub>KPC</sub> bearing plasmids.

Published in:

JAC-Antimicrobial Resistance, 2023, v. 5, n. 3, p. 1, doi. 10.1093/jacamr/dlad061

By:

Simner, Patricia J.;
Bergman, Yehudit;
Fan, Yunfan;
Jacobs, Emily B.;
Ramakrishnan, Srividya;
Lu, Jennifer;
Lewis, Shawna;
Hanlon, Ann;
Tamma, Pranita D.;
Schatz, Michael C.;
Timp, Winston;
Carroll, Karen C.

Publication type:

Article

A novel subcritical transition to turbulence in Taylor–Couette flow with counter-rotating cylinders.

Published in:

Journal of Fluid Mechanics, 2020, v. 892, p. 1, doi. 10.1017/jfm.2020.177

By:

Crowley, Christopher J.;
Krygier, Michael C.;
Borrero-Echeverry, Daniel;
Grigoriev, Roman O.;
Schatz, Michael F.

Publication type:

Article

Control of Confounding and Reporting of Results in Causal Inference Studies. Guidance for Authors from Editors of Respiratory, Sleep, and Critical Care Journals.

Published in:

2019

By:

Lederer, David J;
Bell, Scott C;
Branson, Richard D;
Chalmers, James D;
Marshall, Rachel;
Maslove, David M;
Ost, David E;
Punjabi, Naresh M;
Schatz, Michael;
Smyth, Alan R;
Stewart, Paul W;
Suissa, Samy;
Adjei, Alex A;
Akdis, Cezmi A;
Azoulay, Élie;
Bakker, Jan;
Ballas, Zuhair K;
Bardin, Philip G;
Barreiro, Esther;
Bellomo, Rinaldo

Publication type:

journal article

Implications of Changes in U.S. Food and Drug Administration Prescribing Information Regarding the Safety and Use of Asthma Biologics during Pregnancy.

Published in:

2018

By:

Schatz, Michael;
Krishnan, Jerry A;
Chambers, Christina

Publication type:

journal article

Validation of a New Risk Measure for Chronic Obstructive Pulmonary Disease Exacerbation Using Health Insurance Claims Data.

Published in:

2016

By:

Stanford, Richard H.;
Nag, Arpita;
Mapel, Douglas W.;
Lee, Todd A.;
Rosiello, Richard;
Vekeman, Francis;
Gauthier-Loiselle, Marjolaine;
Mei Sheng Duh;
Merrigan, J. F. Philip;
Schatz, Michael;
Duh, Mei Sheng

Publication type:

journal article

American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report.

Published in:

2015

By:

Bender, Bruce G.;
Krishnan, Jerry A.;
Chambers, David A.;
Cloutier, Michelle M.;
Riekert, Kristin A.;
Rand, Cynthia S.;
Schatz, Michael;
Thomson, Carey C.;
Wilson, Sandra R.;
Apter, Andrea;
Carson, Shannon S.;
George‡, Maureen;
Gerald, Joe K.;
Gerald, Lynn;
Goss, Christopher H.;
Okelo, Sande O.;
Mularski, Richard A.;
Nguyen, Huong Q.;
Patel, Minal R.;
Szefler, Stanley J.

Publication type:

journal article

Automated correction of genome sequence errors.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 2, p. 562, doi. 10.1093/nar/gkh216

By:

Gajer, Pawel;
Schatz, Michael;
Salzberg, Steven L.

Publication type:

Article

An anchored chromosome‐scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids.

Published in:

Plant Genome, 2021, v. 14, n. 2, p. 1, doi. 10.1002/tpg2.20101

By:

Hulse‐Kemp, Amanda M;
Bostan, Hamed;
Chen, Shiyu;
Ashrafi, Hamid;
Stoffel, Kevin;
Sanseverino, Walter;
Li, Linzhou;
Cheng, Shifeng;
Schatz, Michael C.;
Garvin, Tyler;
du Toit, Lindsey J.;
Tseng, Elizabeth;
Chin, Jason;
Iorizzo, Massimo;
Van Deynze, Allen

Publication type:

Article

Metassembler: merging and optimizing de novo genome assemblies.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0764-4

By:

Wences, Alejandro Hernandez;
Schatz, Michael C.

Publication type:

Article

Extending reference assembly models.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0587-3

By:

Church, Deanna M;
Schneider, Valerie A;
Steinberg, Karyn Meltz;
Schatz, Michael C;
Quinlan, Aaron R;
Chin, Chen-Shan;
Kitts, Paul A;
Aken, Bronwen;
Marth, Gabor T;
Hoffman, Michael M;
Herrero, Javier;
Mendoza, M Lisandra Zepeda;
Durbin, Richard;
Flicek, Paul

Publication type:

Article

Extending reference assembly models.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0587-3

By:

Church, Deanna M.;
Schneider, Valerie A.;
Steinberg, Karyn Meltz;
Schatz, Michael C.;
Quinlan, Aaron R.;
Chen-Shan Chin;
Kitts, Paul A.;
Aken, Bronwen;
Marth, Gabor T.;
Hoffman, Michael M.;
Herrero, Javier;
Zepeda Mendoza, M. Lisandra;
Durbin, Richard;
Flicek, Paul

Publication type:

Article

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.

Published in:

Genome Biology, 2014, v. 15, n. 11, p. 1, doi. 10.1186/s13059-014-0506-z

By:

Schatz, Michael C.;
Maron, Lyza G.;
Stein, Joshua C.;
Wences, Alejandro Hernandez;
Gurtowski, James;
Biggers, Eric;
Lee, Hayan;
Kramer, Melissa;
Antoniou, Eric;
Ghiban, Elena;
Wright, Mark H.;
Jer-ming Chia;
Ware, Doreen;
McCouch, Susan R.;
McCombie, W. Richard

Publication type:

Article

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.).

Published in:

Genome Biology, 2013, v. 14, n. 5, p. 1, doi. 10.1186/gb-2013-14-5-r41

By:

Ray Ming;
Van Buren, Robert;
Yanling Liu;
Mei Yang;
Yuepeng Han;
Lei-Ting Li;
Qiong Zhang;
Min-Jeong Kim;
Schatz, Michael C.;
Campbell, Michael;
Jingping Li;
Bowers, John E.;
Haibao Tang;
Lyons, Eric;
Ferguson, Ann A.;
Narzisi, Giuseppe;
Nelson, David R.;
Blaby-Haas, Crysten E.;
Gschwend, Andrea R.;
Yuannian Jiao

Publication type:

Article

The advantages of SMRT sequencing

Published in:

Genome Biology, 2013, v. 14, n. 7, p. 405, doi. 10.1186/gb-2013-14-6-405

By:

Roberts, Richard J;
Carneiro, Mauricio O;
Schatz, Michael C

Publication type:

Article

The DNA60IFX contest.

Published in:

Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-124

By:

Schatz, Michael C.;
Taylor, James;
Schelhorn, Sven-Eric

Publication type:

Article

Sixty years of genome biology.

Published in:

Genome Biology, 2013, v. 14, n. 4, p. 113, doi. 10.1186/gb-2013-14-4-113

By:

Doolittle, W Ford;
Fraser, Peter;
Gerstein, Mark B;
Graveley, Brenton R;
Henikoff, Steven;
Huttenhower, Curtis;
Oshlack, Alicia;
Ponting, Chris P;
Rinn, John L;
Schatz, Michael C;
Ule, Jernej;
Weigel, Detlef;
Weinstock, George M

Publication type:

Article

The advantages of SMRT sequencing.

Published in:

2013

By:

Roberts, Richard J;
Carneiro, Mauricio O;
Schatz, Michael C

Publication type:

Letter

Computational thinking in the era of big data biology.

Published in:

Genome Biology, 2012, v. 13, n. 11, p. 177, doi. 10.1186/gb-2012-13-11-177

By:

Schatz, Michael C

Publication type:

Article

Current challenges in de novo plant genome sequencing and assembly.

Published in:

Genome Biology, 2012, v. 13, n. 4, p. 243, doi. 10.1186/gb-2012-13-4-243

By:

Schatz, Michael C.;
Witkowski, Jan;
McCombie, W. Richard

Publication type:

Article

The prevalence of tuberculosis and positive tuberculin skin tests in a steroid-treated asthmatic population.

Published in:

1976

By:

Schatz, Michael;
Patterson, Roy;
Kloner, Robert;
Falk, Jerrold;
Schatz, M;
Patterson, R;
Kloner, R;
Falk, J

Publication type:

journal article

Administration of Radiographic Contrast Medium After a Prior Adverse Reaction.

Published in:

Annals of Internal Medicine, 1975, v. 83, n. 2, p. 277, doi. 10.7326/0003-4819-83-2-277

By:

Patterson, Roy;
Schatz, Michael

Publication type:

Article

Qualitative Development of the Rhinitis Control Assessment Test (RCAT), an Instrument for Evaluating Rhinitis Symptom Control.

Published in:

Patient, 2010, v. 3, n. 2, p. 91, doi. 10.2165/11318410-000000000-00000

By:

Nathan, Robert A.;
Dalal, Anand A.;
Stanford, Richard H.;
Meltzer, Eli O.;
Schatz, Michael;
Derebery, Jennifer;
Mintz, Matthew;
Thompson, Michelle A.;
DiBenedetti, Dana B.

Publication type:

Article

Recovering rearranged cancer chromosomes from karyotype graphs.

Published in:

BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3208-4

By:

Aganezov, Sergey;
Zban, Ilya;
Aksenov, Vitaly;
Alexeev, Nikita;
Schatz, Michael C.

Publication type:

Article

Immunization surveillance systems for pregnant women.

Published in:

Pharmacoepidemiology & Drug Safety, 2015, v. 24, n. 6, p. 669, doi. 10.1002/pds.3784

By:

Mitchell, Allen A.;
Louik, Carol;
Chambers, Christina;
Jones, Kenneth L.;
Schatz, Michael

Publication type:

Article

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 2, p. 213, doi. 10.1093/bib/bbr074

By:

Schatz, Michael C.;
Phillippy, Adam M.;
Sommer, Daniel D.;
Delcher, Arthur L.;
Puiu, Daniela;
Narzisi, Giuseppe;
Salzberg, Steven L.;
Pop, Mihai

Publication type:

Article

Local adaptation and archaic introgression shape global diversity at human structural variant loci.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.67615

By:

Yan, Stephanie M.;
Sherman, Rachel M.;
Taylor, Dylan J.;
Nair, Divya R.;
Bortvin, Andrew N.;
Schatz, Michael C.;
McCoy, Rajiv C.

Publication type:

Article

SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.60681

By:

Choi, Charlotte P.;
Tay, Rebecca J.;
Starostik, Margaret R.;
Suhua Feng;
Moresco, James J.;
Montgomery, Brooke E.;
Xu, Emily;
Hammonds, Maya A.;
Schatz, Michael C.;
Montgomery, Taiowa A.;
Yates III, John R.;
Jacobsen, Steven E.;
Kim, John K.

Publication type:

Article

The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.61797

By:

Hsiang-Chen Chou;
Bhalla, Kuhulika;
Demerdesh, Osama E. L.;
Klingbeil, Olaf;
Hanington, Kaarina;
Aganezov, Sergey;
Andrews, Peter;
Alsudani, Habeeb;
Chang, Kenneth;
Vakoc, Christopher R.;
Schatz, Michael C.;
McCombie, W. Richard;
Stillman, Bruce

Publication type:

Article

Natural Genetic Diversity in Tomato Flavor Genes.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.642828

By:

Pereira, Lara;
Sapkota, Manoj;
Alonge, Michael;
Zheng, Yi;
Zhang, Youjun;
Razifard, Hamid;
Taitano, Nathan K.;
Schatz, Michael C.;
Fernie, Alisdair R.;
Wang, Ying;
Fei, Zhangjun;
Caicedo, Ana L.;
Tieman, Denise M.;
van der Knaap, Esther

Publication type:

Article

Conservation Genomics of the Declining North American Bumblebee Bombus terricola Reveals Inbreeding and Selection on Immune Genes.

Published in:

Frontiers in Genetics, 2018, p. N.PAG, doi. 10.3389/fgene.2018.00316

By:

Kent, Clement F.;
Dey, Alivia;
Patel, Harshilkumar;
Tsvetkov, Nadejda;
Tiwari, Tanushree;
MacPhail, Victoria J.;
Gobeil, Yann;
Harpur, Brock A.;
Gurtowski, James;
Schatz, Michael C.;
Colla, Sheila R.;
Zayed, Amro

Publication type:

Article

Answering the demands of digital genomics.

Published in:

Concurrency & Computation: Practice & Experience, 2014, v. 26, n. 4, p. 917, doi. 10.1002/cpe.2925

By:

Titmus, Matthew A.;
Gurtowski, James;
Schatz, Michael C.

Publication type:

Article

The Role of Allergens in Asthma.

Published in:

American Family Physician, 2015, v. 91, p. 1

By:

PLATTS-MILLS, THOMAS;
LEUNG, DONALD Y. M.;
SCHATZ, MICHAEL

Publication type:

Article

Family Physicians Capable of Administering Immunotherapy.

Published in:

2008

By:

Saxer, John;
Platts-Mills, Thomas A. E.;
Leung, Donald Y. M.;
Schatz, Michael;
Lin, Kenny;
Siwek, Jay

Publication type:

Letter

The Role of Allergens in Asthma.

Published in:

American Family Physician, 2007, v. 76, n. 5, p. 675

By:

Platts-Mills, Thomas;
Leung, Donald Y. M.;
Schatz, Michael

Publication type:

Article

Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 9, p. 1, doi. 10.1093/gbe/evad148

By:

Scheben, Armin;
Ramos, Olivia Mendivil;
Kramer, Melissa;
Goodwin, Sara;
Oppenheim, Sara;
Becker, Daniel J;
Schatz, Michael C;
Simmons, Nancy B;
Siepel, Adam;
McCombie, W Richard

Publication type:

Article

Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 5, p. 1, doi. 10.1093/gbe/evac059

By:

Fields, Peter D.;
Waneka, Gus;
Naish, Matthew;
Schatz, Michael C.;
Henderson, Ian R.;
Sloan, Daniel B.

Publication type:

Article

Contemporary management and treatment strategies for asthma during pregnancy.

Published in:

Expert Review of Respiratory Medicine, 2021, v. 15, n. 9, p. 1149, doi. 10.1080/17476348.2021.1935243

By:

Namazy, Jennifer A.;
Schatz, Michael

Publication type:

Article

National Asthma Education and Prevention Program 2020 Guideline Update: Where Do We Go from Here?

Published in:

2021

By:

Krishnan, Jerry A.;
Cloutier, Michelle M.;
Schatz, Michael

Publication type:

Editorial

Patterns of prednisone use during pregnancy in women with rheumatoid arthritis: Daily and cumulative dose.

Published in:

Pharmacoepidemiology & Drug Safety, 2018, v. 27, n. 4, p. 430, doi. 10.1002/pds.4410

By:

Palmsten, Kristin;
Rolland, Matthieu;
Hebert, Mary F.;
Clowse, Megan E. B.;
Schatz, Michael;
Xu, Ronghui;
Chambers, Christina D.

Publication type:

Article

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-55195-w

By:

Cahn, Jonathan;
Regulski, Michael;
Lynn, Jason;
Ernst, Evan;
de Santis Alves, Cristiane;
Ramakrishnan, Srividya;
Chougule, Kapeel;
Wei, Sharon;
Lu, Zhenyuan;
Xu, Xiaosa;
Ramu, Umamaheswari;
Drenkow, Jorg;
Kramer, Melissa;
Seetharam, Arun;
Hufford, Matthew B.;
McCombie, W. Richard;
Ware, Doreen;
Jackson, David;
Schatz, Michael C.;
Gingeras, Thomas R.

Publication type:

Article

Erratum to: The advantages of SMRT sequencing.

Published in:

Genome Biology, 2017, v. 18, n. 1, p. 1, doi. 10.1186/s13059-017-1295-y

By:

Roberts, Richard;
Carneiro, Mauricio;
Schatz, Michael

Publication type:

Article

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0803-1

By:

Smolka, Moritz;
Rescheneder, Philipp;
Schatz, Michael C.;
von Haeseler, Arndt;
Sedlazeck, Fritz J.

Publication type:

Article

Pharmacological difficulties in the treatment of asthma in pregnant women.

Published in:

Expert Review of Clinical Pharmacology, 2017, v. 10, n. 3, p. 285, doi. 10.1080/17512433.2017.1268914

By:

Namazy, Jennifer A.;
Schatz, Michael

Publication type:

Article

Mem-based pangenome indexing for k-mer queries.

Published in:

Algorithms for Molecular Biology, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13015-025-00272-y

By:

Hwang, Stephen;
Brown, Nathaniel K.;
Ahmed, Omar Y.;
Jenike, Katharine M.;
Kovaka, Sam;
Schatz, Michael C.;
Langmead, Ben

Publication type:

Article

A structured review evaluating content validity of the Asthma Control Test, and its consistency with U.S. guidelines and patient expectations for asthma control.

Published in:

2022

By:

Nelsen, Linda M.;
Kosinski, Mark;
Rizio, Avery A.;
Jacques, Loretta;
Schatz, Michael;
Stanford, Richard H.;
Svedsater, Henrik

Publication type:

Literature Review

Asthma prevalence among women aged 18 to 44 in the United States: National health and nutrition examination survey 2001–2016.

Published in:

Journal of Asthma, 2020, v. 57, n. 7, p. 693, doi. 10.1080/02770903.2019.1602874

By:

Flores, Katrina F.;
Bandoli, Gretchen;
Chambers, Christina D.;
Schatz, Michael;
Palmsten, Kristin

Publication type:

Article

Tobacco counseling in the setting of thyroid eye disease.

Published in:

Arquivos Brasileiros de Oftalmologia, 2022, v. 85, n. 1, p. 13, doi. 10.5935/0004-2749.20220003

By:

Jacob Schatz, Michael;
McGeehan, Brendan C.;
Maguire, Maureen G.;
Briceño, César A.

Publication type:

Article

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor.

Published in:

PLoS Pathogens, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.ppat.1009537

By:

Vornhagen, Jay;
Bassis, Christine M.;
Ramakrishnan, Srividya;
Hein, Robert;
Mason, Sophia;
Bergman, Yehudit;
Sunshine, Nicole;
Fan, Yunfan;
Holmes, Caitlyn L.;
Timp, Winston;
Schatz, Michael C.;
Young, Vincent B.;
Simner, Patricia J.;
Bachman, Michael A.

Publication type:

Article