Works by Schacherer, Joseph

Results: 49

Sex without crossing over in the yeast Saccharomycodes ludwigii.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02521-w

By:

Papaioannou, Ioannis A.;
Dutreux, Fabien;
Peltier, France A.;
Maekawa, Hiromi;
Delhomme, Nicolas;
Bardhan, Amit;
Friedrich, Anne;
Schacherer, Joseph;
Knop, Michael

Publication type:

Article

nPhase: an accurate and contiguous phasing method for polyploids.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02342-x

By:

Abou Saada, Omar;
Tsouris, Andreas;
Eberlein, Chris;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Genome-wide analysis of intraspecific transposon diversity in yeast.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-399

By:

Bleykasten-Grosshans, Claudine;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-99

By:

Fritsch, Emilie S.;
Schacherer, Joseph;
Bleykasten-Grosshans, Claudine;
Souciet, Jean-Luc;
Potier, Serge;
de Montigny, Jacky

Publication type:

Article

Loss of heterozygosity results in rapid but variable genome homogenization across yeast genetic backgrounds.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.70339

By:

Dutta, Abhishek;
Dutreux, Fabien;
Schacherer, Joseph

Publication type:

Article

The induction of HAD-like phosphatases by multiple signaling pathways confers resistance to the metabolic inhibitor 2-deoxyglucose.

Published in:

Science Signaling, 2019, v. 12, n. 597, p. 1, doi. 10.1126/scisignal.aaw8000

By:

Defenouillère, Quentin;
Verraes, Agathe;
Laussel, Clotilde;
Friedrich, Anne;
Schacherer, Joseph;
Léon, Sébastien

Publication type:

Article

Comparative Mitochondrial Genomics within and among Yeast Species of the Lachancea Genus.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047834

By:

Friedrich, Anne;
Jung, Paul P.;
Jing Hou;
Neuvéglise, Cécile;
Schacherer, Joseph

Publication type:

Article

Spontaneous deletions and reciprocal translocations in Saccharomyces cerevisiae: influence of ploidy.

Published in:

Molecular Microbiology, 2007, v. 64, n. 2, p. 382, doi. 10.1111/j.1365-2958.2007.05660.x

By:

Tourrette, Yves;
Schacherer, Joseph;
Fritsch, Emilie;
Potier, Serge;
Souciet, Jean-Luc;
De Montigny, Jacky

Publication type:

Article

Brettanomyces bruxellensis: Overview of the genetic and phenotypic diversity of an anthropized yeast.

Published in:

Molecular Ecology, 2023, v. 32, n. 10, p. 2374, doi. 10.1111/mec.16439

By:

Harrouard, Jules;
Eberlein, Chris;
Ballestra, Patricia;
Dols‐Lafargue, Marguerite;
Masneuf‐Pomarede, Isabelle;
Miot‐Sertier, Cécile;
Schacherer, Joseph;
Albertin, Warren;
Ropars, Jeanne

Publication type:

Article

Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast.

Published in:

Molecular Systems Biology, 2024, v. 20, n. 4, p. 362, doi. 10.1038/s44320-024-00021-0

By:

Tsouris, Andreas;
Brach, Gauthier;
Friedrich, Anne;
Hou, Jing;
Schacherer, Joseph

Publication type:

Article

Incompatibilities in Mismatch Repair Genes MLH1-PMS1 Contribute to a Wide Range of Mutation Rates in Human Isolates of Baker's Yeast.

Published in:

Genetics, 2018, v. 210, n. 4, p. 1253, doi. 10.1534/genetics.118.301550

By:

Raghavan, Vandana;
Bui, Duyen T.;
Al-Sweel, Najla;
Aquadro, Charles F.;
Alani, Eric;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Mismatch Repair Incompatibilities in Diverse Yeast Populations.

Published in:

Genetics, 2017, v. 205, n. 4, p. 1459, doi. 10.1534/genetics.116.199513

By:

Duyen T. Bui;
Friedrich, Anne;
Al-Sweel, Najla;
Liti, Gianni;
Schacherer, Joseph;
Aquadro, Charles F.;
Alani, Eric

Publication type:

Article

RNAi as a Tool to Study Virulence in the Pathogenic Yeast Candida glabrata.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01679

By:

Ishchuk, Olena P.;
Ahmad, Khadija Mohamed;
Koruza, Katarina;
Bojanovič, Klara;
Sprenger, Marcel;
Kasper, Lydia;
Brunke, Sascha;
Hube, Bernhard;
Säll, Torbjörn;
Hellmark, Thomas;
Gullstrand, Birgitta;
Brion, Christian;
Freel, Kelle;
Schacherer, Joseph;
Regenberg, Birgitte;
Knecht, Wolfgang;
Piškur, Jure

Publication type:

Article

Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-54

By:

Yvert, Gaël;
Ohnuki, Shinsuke;
Nogami, Satoru;
Imanaga, Yasutaka;
Fehrmann, Steffen;
Schacherer, Joseph;
Ohya, Yoshikazu

Publication type:

Article

The dynamics of loss of heterozygosity events in genomes.

Published in:

EMBO Reports, 2025, v. 26, n. 3, p. 602, doi. 10.1038/s44319-024-00353-w

By:

Dutta, Abhishek;
Schacherer, Joseph

Publication type:

Article

Discordant evolution of mitochondrial and nuclear yeast genomes at population level.

Published in:

BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00786-4

By:

De Chiara, Matteo;
Friedrich, Anne;
Barré, Benjamin;
Breitenbach, Michael;
Schacherer, Joseph;
Liti, Gianni

Publication type:

Article

Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii.

Published in:

PLoS Genetics, 2023, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010592

By:

Dutreux, Fabien;
Dutta, Abhishek;
Peltier, Emilien;
Bibi-Triki, Sabrina;
Friedrich, Anne;
Llorente, Bertrand;
Schacherer, Joseph

Publication type:

Article

André Goffeau's imprinting on second generation yeast "genomologists".

Published in:

Yeast, 2019, v. 36, n. 4, p. 167, doi. 10.1002/yea.3377

By:

Fairhead, Cécile;
Fischer, Gilles;
Liti, Gianni;
Neuvéglise, Cécile;
Schacherer, Joseph

Publication type:

Article

Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi‐C.

Published in:

Yeast, 2018, v. 35, n. 1, p. 71, doi. 10.1002/yea.3280

By:

Smukowski Heil, Caiti;
Burton, Joshua N.;
Liachko, Ivan;
Friedrich, Anne;
Hanson, Noah A.;
Morris, Cody L.;
Schacherer, Joseph;
Shendure, Jay;
Thomas, James H.;
Dunham, Maitreya J.

Publication type:

Article

Population genomics of yeasts: towards a comprehensive view across a broad evolutionary scale.

Published in:

2016

By:

Peter, Jackson;
Schacherer, Joseph

Publication type:

Other

Variation of the meiotic recombination landscape and properties over a broad evolutionary distance in yeasts.

Published in:

PLoS Genetics, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pgen.1006917

By:

Brion, Christian;
Legrand, Sylvain;
Peter, Jackson;
Caradec, Claudia;
Pflieger, David;
Hou, Jing;
Friedrich, Anne;
Llorente, Bertrand;
Schacherer, Joseph

Publication type:

Article

Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 5, p. 2434, doi. 10.1093/nar/gkae030

By:

Teyssonniere, Elie M;
Shichino, Yuichi;
Mito, Mari;
Friedrich, Anne;
Iwasaki, Shintaro;
Schacherer, Joseph

Publication type:

Article

Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast.

Published in:

Nature Communications, 2015, v. 6, n. 5, p. 7214, doi. 10.1038/ncomms8214

By:

Hou, Jing;
Friedrich, Anne;
Gounot, Jean-Sebastien;
Schacherer, Joseph

Publication type:

Article

Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 2, p. 1, doi. 10.1093/gbe/evad004

By:

Friedrich, Anne;
Gounot, Jean-Sébastien;
Tsouris, Andreas;
Bleykasten, Claudine;
Freel, Kelle;
Caradec, Claudia;
Schacherer, Joseph

Publication type:

Article

High Complexity and Degree of Genetic Variation in Brettanomyces bruxellensis Population.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 6, p. 795, doi. 10.1093/gbe/evaa077

By:

Gounot, Jean-Sébastien;
Neuvéglise, Cécile;
Freel, Kelle C;
Devillers, Hugo;
Piškur, Jure;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Whole-Genome Sequencing and Intraspecific Analysis of the Yeast Species Lachancea quebecensis.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 3, p. 733, doi. 10.1093/gbe/evv262

By:

Freel, Kelle C.;
Friedrich, Anne;
Sarilar, Véronique;
Devillers, Hugo;
Neuvéglise, Cécile;
Schacherer, Joseph

Publication type:

Article

Mining yeast diversity unveils novel targets for improved heterologous laccase production in Saccharomyces cerevisiae.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-025-02677-1

By:

Wong, Ryan Wei Kwan;
Foo, Marissa;
Lay, Jasmine R. S.;
Wai, Tiffany L. T.;
Moore, Jackson;
Dutreux, Fabien;
Molzahn, Cristen;
Nislow, Corey;
Measday, Vivien;
Schacherer, Joseph;
Mayor, Thibault

Publication type:

Article

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae.

Published in:

2009

By:

Schacherer, Joseph;
Shapiro, Joshua A.;
Ruderfer, Douglas M.;
Kruglyak, Leonid

Publication type:

Letter

Population Genomic Analysis Reveals Highly Conserved Mitochondrial Genomes in the Yeast Species Lachancea thermotolerans.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 10, p. 2586, doi. 10.1093/gbe/evu203

By:

Freel, Kelle C.;
Friedrich, Anne;
Hou, Jing;
Schacherer, Joseph

Publication type:

Article

Multiple independent losses of crossover interference during yeast evolutionary history.

Published in:

PLoS Genetics, 2024, v. 20, n. 9, p. 1, doi. 10.1371/journal.pgen.1011426

By:

Dutta, Abhishek;
Dutreux, Fabien;
Garin, Marion;
Caradec, Claudia;
Friedrich, Anne;
Brach, Gauthier;
Thiele, Pia;
Gaudin, Maxime;
Llorente, Bertrand;
Schacherer, Joseph

Publication type:

Article

Species-wide survey of the expressivity and complexity spectrum of traits in yeast.

Published in:

PLoS Genetics, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pgen.1011119

By:

Tsouris, Andreas;
Fournier, Téo;
Friedrich, Anne;
Hou, Jing;
Dunham, Maitreya J.;
Schacherer, Joseph

Publication type:

Article

Negative epistasis: a route to intraspecific reproductive isolation in yeast?

Published in:

Current Genetics, 2016, v. 62, n. 1, p. 25, doi. 10.1007/s00294-015-0505-y

By:

Hou, Jing;
Schacherer, Joseph

Publication type:

Article

Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species.

Published in:

Current Genetics, 2010, v. 56, n. 6, p. 507, doi. 10.1007/s00294-010-0318-y

By:

Jung, Paul P.;
Friedrich, Anne;
Souciet, Jean-Luc;
Louis, Véronique;
Potier, Serge;
de Montigny, Jacky;
Schacherer, Joseph

Publication type:

Article

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Published in:

GigaScience, 2017, v. 6, n. 2, p. 1, doi. 10.1093/gigascience/giw018

By:

Istace, Benjamin;
Friedrich, Anne;
d'Agata, Léo;
Faye, Sébastien;
Payen, Emilie;
Beluche, Odette;
Caradec, Claudia;
Davidas, Sabrina;
Cruaud, Corinne;
Liti, Gianni;
Lemainque, Arnaud;
Engelen, Stefan;
Wincker, Patrick;
Schacherer, Joseph;
Aury, Jean-Marc

Publication type:

Article

Quantitative Trait Nucleotides Impacting the Technological Performances of Industrial Saccharomyces cerevisiae Strains.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00683

By:

Peltier, Emilien;
Friedrich, Anne;
Schacherer, Joseph;
Marullo, Philippe

Publication type:

Article

Reshuffling yeast chromosomes with CRISPR/Cas9.

Published in:

PLoS Genetics, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pgen.1008332

By:

Fleiss, Aubin;
O'Donnell, Samuel;
Fournier, Téo;
Lu, Wenqing;
Agier, Nicolas;
Delmas, Stéphane;
Schacherer, Joseph;
Fischer, Gilles

Publication type:

Article

Loss of Heterozygosity Spectrum Depends on Ploidy Level in Natural Yeast Populations.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 11, p. 1, doi. 10.1093/molbev/msac214

By:

Dutta, Abhishek;
Dutreux, Fabien;
Schacherer, Joseph

Publication type:

Article

Species-Wide Transposable Element Repertoires Retrace the Evolutionary History of the Saccharomyces cerevisiae Host.

Published in:

Molecular Biology & Evolution, 2021, v. 38, n. 10, p. 4334, doi. 10.1093/molbev/msab171

By:

Bleykasten-Grosshans, Claudine;
Fabrizio, Romeo;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Pervasive Phenotypic Impact of a Large Nonrecombining Introgressed Region in Yeast.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 9, p. 2520, doi. 10.1093/molbev/msaa101

By:

Brion, Christian;
Caradec, Claudia;
Pflieger, David;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Fitness Trade-Offs Lead to Suppressor Tolerance in Yeast.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 1, p. 110, doi. 10.1093/molbev/msw225

By:

Jing Hou;
Joseph Schacherer

Publication type:

Article

Population Genomics Reveals Chromosome-Scale Heterogeneous Evolution in a Protoploid Yeast.

Published in:

Molecular Biology & Evolution, 2015, v. 32, n. 1, p. 184, doi. 10.1093/molbev/msu295

By:

Friedrich, Anne;
Jung, Paul;
Reisser, Cyrielle;
Fischer, Gilles;
Schacherer, Joseph

Publication type:

Article

Evolution of intraspecific transcriptomic landscapes in yeasts

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4558, doi. 10.1093/nar/gkv363

By:

Brion, Christian;
Pflieger, David;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Duplication processes in Saccharomyces cerevisiae haploid strains.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 19, p. 6319, doi. 10.1093/nar/gki941

By:

Schacherer, Joseph;
de Montigny, Jacky;
Welcker, Anne;
Souciet, Jean-Luc;
Potier, Serge

Publication type:

Article

Overview of the Saccharomyces cerevisiae population structure through the lens of 3,034 genomes.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 12, p. 1, doi. 10.1093/g3journal/jkae245

By:

Loegler, Victor;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Impact of the acquired subgenome on the transcriptional landscape in Brettanomyces bruxellensis allopolyploids.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 7, p. 1, doi. 10.1093/g3journal/jkad115

By:

Jallet, Arthur;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 11, p. 4287, doi. 10.1534/g3.120.401498

By:

Stoneman, Hayley R.;
Wrobel, Russell L.;
Place, Michael;
Graham, Michael;
Krause, David J.;
De Chiara, Matteo;
Liti, Gianni;
Schacherer, Joseph;
Landick, Robert;
Gasch, Audrey P.;
Sato, Trey K.;
Hittinger, Chris Todd

Publication type:

Article

High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 10, p. 3243, doi. 10.1534/g3.117.300128

By:

Fournier, Téo;
Gounot, Jean-Sébastien;
Freel, Kelle;
Cruaud, Corinne;
Lemainque, Arnaud;
Aury, Jean-Marc;
Wincker, Patrick;
Schacherer, Joseph;
Friedrich, Anne

Publication type:

Article

Phenotypic Diagnosis of Lineage and Differentiation During Sake Yeast Breeding.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 8, p. 2807, doi. 10.1534/g3.117.044099

By:

Shinsuke Ohnuki;
Hiroki Okada;
Anne Friedrich;
Yoichiro Kanno;
Tetsuya Goshima;
Hirokazu Hasuda;
Masaaki Inahashi;
Naoto Okazaki;
Hiroyasu Tamura;
Ryo Nakamura;
Dai Hirata;
Hisashi Fukuda;
Hitoshi Shimoi;
Katsuhiko Kitamoto;
Daisuke Watanabe;
Joseph Schacherer;
Takeshi Akao;
Yoshikazu Ohya

Publication type:

Article

Large-Scale Survey of Intraspecific Fitness and Cell Morphology Variation in a Protoploid Yeast Species.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 4, p. 1063, doi. 10.1534/g3.115.026682

By:

Jung, Paul P.;
Sigwalt, Anastasie;
Shinsuke Ohnuki;
de Montigny, Jacky;
Yoshikazu Ohya;
Schacherer, Joseph

Publication type:

Article