Found: 42
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Bifurcation discovery tool.
- Published in:
- Bioinformatics, 2005, v. 21, n. 18, p. 3688, doi. 10.1093/bioinformatics/bti603
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- Publication type:
- Article
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/1752-0509-8-13
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- Publication type:
- Article
Tissue Forge: Interactive biological and biophysics simulation environment.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010768
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- Publication type:
- Article
A brief note on the properties of linear pathways.
- Published in:
- Biochemical Society Transactions, 2020, v. 48, n. 4, p. 1379, doi. 10.1042/BST20190842
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- Publication type:
- Article
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 61, doi. 10.1186/s12859-014-0369-z
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- Publication type:
- Article
Fan-out in gene regulatory networks.
- Published in:
- Journal of Biological Engineering, 2010, v. 4, p. 16, doi. 10.1186/1754-1611-4-16
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- Publication type:
- Article
Designing and engineering evolutionary robust genetic circuits.
- Published in:
- Journal of Biological Engineering, 2010, v. 4, p. 12, doi. 10.1186/1754-1611-4-12
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- Publication type:
- Article
phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 6, p. -1, doi. 10.1142/S0219720016500359
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- Publication type:
- Article
Use of interactive mathematical simulations in Fundamentals of Biochemistry, a LibreText online educational resource, to promote understanding of dynamic reactions.
- Published in:
- Biochemistry & Molecular Biology Education, 2024, v. 52, n. 4, p. 426, doi. 10.1002/bmb.21830
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- Publication type:
- Article
Publishing reproducible dynamic kinetic models.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa152
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- Publication type:
- Article
Essential information for synthetic DNA sequences.
- Published in:
- 2011
- By:
- Publication type:
- Letter
A Reappraisal of How to Build Modular, Reusable Models of Biological Systems.
- Published in:
- 2014
- By:
- Publication type:
- Opinion
Adjusting Phenotypes by Noise Control.
- Published in:
- PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002344
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- Publication type:
- Article
Transcriptional Dynamics of the Embryonic Stem Cell Switch.
- Published in:
- PLoS Computational Biology, 2006, v. 2, n. 9, p. e123, doi. 10.1371/journal.pcbi.0020123
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- Publication type:
- Article
VSCode-Antimony: a source editor for building, analyzing, and translating antimony models.
- Published in:
- Bioinformatics, 2023, v. 39, n. 12, p. 1, doi. 10.1093/bioinformatics/btad753
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- Publication type:
- Article
An automated model annotation system (AMAS) for SBML models.
- Published in:
- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad658
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- Publication type:
- Article
SBMLDiagrams: a python package to process and visualize SBML layout and render.
- Published in:
- Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btac730
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- Publication type:
- Article
SBbadger: biochemical reaction networks with definable degree distributions.
- Published in:
- Bioinformatics, 2022, v. 38, n. 22, p. 5064, doi. 10.1093/bioinformatics/btac630
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- Publication type:
- Article
libOmexMeta: enabling semantic annotation of models to support FAIR principles.
- Published in:
- Bioinformatics, 2021, v. 37, n. 24, p. 4898, doi. 10.1093/bioinformatics/btab445
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- Publication type:
- Article
MakeSBML: a tool for converting between Antimony and SBML.
- Published in:
- Journal of Integrative Bioinformatics, 2024, v. 21, n. 1, p. 1, doi. 10.1515/jib-2024-0002
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- Publication type:
- Article
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0005
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- Publication type:
- Article
Standard Biological Parts Knowledgebase.
- Published in:
- PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0017005
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- Publication type:
- Article
Synthetic biology: It's an analog world.
- Published in:
- Nature, 2013, v. 497, n. 7451, p. 572, doi. 10.1038/nature12246
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- Publication type:
- Article
Special Issue: Methods in Computational Biology.
- Published in:
- 2019
- By:
- Publication type:
- Editorial
Application of Parameter Optimization to Search for Oscillatory Mass-Action Networks Using Python.
- Published in:
- Processes, 2019, v. 7, n. 3, p. 163, doi. 10.3390/pr7030163
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- Publication type:
- Article
Rationally designed bidirectional promoter improves the evolutionary stability of synthetic genetic circuits.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 1, p. e33, doi. 10.1093/nar/gks972
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- Publication type:
- Article
libRoadRunner: a high performance SBML simulation and analysis library.
- Published in:
- Bioinformatics, 2015, v. 31, n. 20, p. 3315, doi. 10.1093/bioinformatics/btv363
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- Publication type:
- Article
SBML and CellML translation in Antimony and JSim.
- Published in:
- Bioinformatics, 2014, v. 30, n. 7, p. 903, doi. 10.1093/bioinformatics/btt641
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- Publication type:
- Article
SBML2TikZ: supporting the SBML render extension in LaTeX.
- Published in:
- Bioinformatics, 2010, v. 26, n. 21, p. 2794, doi. 10.1093/bioinformatics/btq512
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- Publication type:
- Article
Antimony: a modular model definition language.
- Published in:
- Bioinformatics, 2009, v. 25, n. 18, p. 2452, doi. 10.1093/bioinformatics/btp401
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- Publication type:
- Article
Comparing simulation results of SBML capable simulators.
- Published in:
- Bioinformatics, 2008, v. 24, n. 17, p. 1963, doi. 10.1093/bioinformatics/btn319
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- Publication type:
- Article
Stochastic simulation GUI for biochemical networks.
- Published in:
- Bioinformatics, 2007, v. 23, n. 14, p. 1859
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- Publication type:
- Article
Supporting the SBML layout extension.
- Published in:
- Bioinformatics, 2006, v. 22, n. 23, p. 2966, doi. 10.1093/bioinformatics/btl520
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- Publication type:
- Article
In-Fusion BioBrick assembly and re-engineering.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 8, p. 2624, doi. 10.1093/nar/gkq179
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- Publication type:
- Article
Preliminary Studies on the In Silico Evolution of Biochemical Networks.
- Published in:
- ChemBioChem, 2004, v. 5, n. 10, p. 1423
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- Publication type:
- Article
Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006220
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- Publication type:
- Article
Design patterns of biological cells.
- Published in:
- BioEssays, 2024, v. 46, n. 3, p. 1, doi. 10.1002/bies.202300188
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- Publication type:
- Article
Adapting modeling and simulation credibility standards to computational systems biology.
- Published in:
- Journal of Translational Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12967-023-04290-5
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- Publication type:
- Article
In search of noise-induced bimodality.
- Published in:
- BMC Biology, 2012, v. 10, n. 1, p. 89, doi. 10.1186/1741-7007-10-89
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- Publication type:
- Article
Modularity defined.
- Published in:
- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.3
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- Publication type:
- Article
A compiler for biological networks on silicon chips.
- Published in:
- PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008063
- By:
- Publication type:
- Article
Improving reproducibility in computational biology research.
- Published in:
- 2020
- By:
- Publication type:
- Editorial