Works by Sarwal, Varuni

Results: 7

Machine learning for the prediction of urosepsis using electronic health record data.

Published in:

PLoS Digital Health, 2025, v. 4, n. 7, p. 1, doi. 10.1371/journal.pdig.0000896

By:

Sarwal, Varuni;
Rakocz, Nadav;
Dominique, Georgina;
Chiang, Jeffrey N.;
Ackerman, A. Lenore

Publication type:

Article

TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles.

Published in:

GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad008

By:

Sarwal, Varuni;
Brito, Jaqueline;
Mangul, Serghei;
Koslicki, David

Publication type:

Article

Challenges and recommendations to improve the installability and archival stability of omics computational tools.

Published in:

PLoS Biology, 2019, v. 17, n. 6, p. 1, doi. 10.1371/journal.pbio.3000333

By:

Mangul, Serghei;
Mosqueiro, Thiago;
Abdill, Richard J.;
Duong, Dat;
Mitchell, Keith;
Sarwal, Varuni;
Hill, Brian;
Brito, Jaqueline;
Littman, Russell Jared;
Statz, Benjamin;
Lam, Angela Ka-Mei;
Dayama, Gargi;
Grieneisen, Laura;
Martin, Lana S.;
Flint, Jonathan;
Eskin, Eleazar;
Blekhman, Ran

Publication type:

Article

VISTA: an integrated framework for structural variant discovery.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae462

By:

Sarwal, Varuni;
Lee, Seungmo;
Yang, Jianzhi;
Sankararaman, Sriram;
Chaisson, Mark;
Eskin, Eleazar;
Mangul, Serghei

Publication type:

Article

comprehensive benchmarking of WGS-based deletion structural variant callers.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac221

By:

Sarwal, Varuni;
Niehus, Sebastian;
Ayyala, Ram;
Kim, Minyoung;
Sarkar, Aditya;
Chang, Sei;
Lu, Angela;
Rajkumar, Neha;
Darfci-Maher, Nicholas;
Littman, Russell;
Chhugani, Karishma;
Soylev, Arda;
Comarova, Zoia;
Wesel, Emily;
Castellanos, Jacqueline;
Chikka, Rahul;
Distler, Margaret G;
Eskin, Eleazar;
Flint, Jonathan;
Mangul, Serghei

Publication type:

Article

Packaging and containerization of computational methods.

Published in:

Nature Protocols, 2024, v. 19, n. 9, p. 2529, doi. 10.1038/s41596-024-00986-0

By:

Alser, Mohammed;
Lawlor, Brendan;
Abdill, Richard J.;
Waymost, Sharon;
Ayyala, Ram;
Rajkumar, Neha;
LaPierre, Nathan;
Brito, Jaqueline;
Ribeiro-dos-Santos, André M.;
Almadhoun, Nour;
Sarwal, Varuni;
Firtina, Can;
Osinski, Tomasz;
Eskin, Eleazar;
Hu, Qiyang;
Strong, Derek;
Kim, Byoung-Do;
Abedalthagafi, Malak S.;
Mutlu, Onur;
Mangul, Serghei

Publication type:

Article

Integrating big data computational skills in education to facilitate reproducibility and transparency in pharmaceutical sciences.

Published in:

JACCP: Journal of the American College of Clinical Pharmacy, 2021, v. 4, n. 10, p. 1263, doi. 10.1002/jac5.1519

By:

Peng, Kerui;
Huang, Yu Ning;
Sarwal, Varuni;
Alachkar, Houda;
Wong‐Beringer, Annie;
Mangul, Serghei

Publication type:

Article