Works matching AU Sarntivijai, Sirarat

Results: 16

Linking MedDRA(®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors.

Published in:

2016

By:

Sarntivijai, Sirarat;
Zhang, Shelley;
Jagannathan, Desikan G;
Zaman, Shadia;
Burkhart, Keith K;
Omenn, Gilbert S;
He, Yongqun;
Athey, Brian D;
Abernethy, Darrell R

Publication type:

journal article

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 237, doi. 10.1186/s12859-019-2723-7

By:

He, Yongqun;
Duncan, William D.;
Cooper, Daniel J.;
Hansen, Jens;
Iyengar, Ravi;
Ong, Edison;
Walker, Kendal;
Tibi, Omar;
Smith, Sam;
Serra, Lucas M.;
Zheng, Jie;
Sarntivijai, Sirarat;
Schürer, Stephan;
O'Shea, K. Sue;
Diehl, Alexander D.

Publication type:

Article

Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 227, doi. 10.1186/s12859-019-2721-9

By:

Sarntivijai, Sirarat;
He, Yongqun;
Diehl, Alexander D.

Publication type:

Article

Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions.

Published in:

Gene Regulation & Systems Biology, 2017, n. 11, p. 1, doi. 10.1177/1177625017696075

By:

Zaman, Shadia;
Sarntivijai, Sirarat;
Abernethy, Darrell R.

Publication type:

Article

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1981-5

By:

Ong, Edison;
Jiangan Xie;
Zhaohui Ni;
Qingping Liu;
Sarntivijai, Sirarat;
Yu Lin;
Cooper, Daniel;
Terryn, Raymond;
Stathias, Vasileios;
Chung, Caty;
Schürer, Stephan;
Yongqun He

Publication type:

Article

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1979-z

By:

Ong, Edison;
Sarntivijai, Sirarat;
Jupp, Simon;
Parkinson, Helen;
Yongqun He

Publication type:

Article

Usage of cell nomenclature in biomedical literature.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1978-0

By:

Kafkas, Şenay;
Sarntivijai, Sirarat;
Hoehndorf, Robert

Publication type:

Article

Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1976-2

By:

Sarntivijai, Sirarat;
Diehl, Alexander D.;
Yongqun He

Publication type:

Article

A bioinformatics analysis of the cell line nomenclature.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2760, doi. 10.1093/bioinformatics/btn502

By:

Sirarat Sarntivijai;
Alexander S. Ade;
Brian D. Athey;
David J. States

Publication type:

Article

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7

By:

Diehl, Alexander D.;
Meehan, Terrence F.;
Bradford, Yvonne M.;
Brush, Matthew H.;
Dahdul, Wasila M.;
Dougall, David S.;
Yongqun He;
Osumi-Sutherland, David;
Ruttenberg, Alan;
Sarntivijai, Sirarat;
Van Slyke, Ceri E.;
Vasilevsky, Nicole A.;
Haendel, Melissa A.;
Blake, Judith A.;
Mungall, Christopher J.

Publication type:

Article

Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0055-3

By:

Jupp, Simon;
Burdett, Tony;
Welter, Danielle;
Sarntivijai, Sirarat;
Parkinson, Helen;
Malone, James

Publication type:

Article

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0051-7

By:

Sarntivijai, Sirarat;
Vasant, Drashtti;
Jupp, Simon;
Saunders, Gary;
Bento, A. Patrícia;
Gonzalez, Daniel;
Betts, Joanna;
Hasan, Samiul;
Koscielny, Gautier;
Dunham, Ian;
Parkinson, Helen;
Malone, James

Publication type:

Article

Reporting phenotypes in mouse models when considering body size as a potential confounder.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0050-8

By:

Oellrich, Anika;
Meehan, Terrence F.;
Parkinson, Helen;
Sarntivijai, Sirarat;
White, Jacqueline K.;
Karp, Natasha A.

Publication type:

Article

Guidelines for FAIR Sharing of Preclinical Safety and Off-Target Pharmacology Data.

Published in:

Altex, 2021, v. 38, n. 2, p. 187, doi. 10.14573/altex.2011181

By:

Briggs, Katharine;
Bosc, Nicolas;
Camara, Tima;
Diaz, Carlos;
Drew, Phil;
Drewe, William C.;
Kors, Jan;
van Mulligen, Erik;
Pastor, Manuel;
Pognan, Francois;
Quintana, Jordi Ramon;
Sarntivijai, Sirarat;
Steger-Hartmann, Thomas

Publication type:

Article

A systems pharmacology approach to model tyrosine kinase inhibitor‐induced cardiotoxicity gene interaction networks (844.17).

Published in:

FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.844.17

By:

Sarntivijai, Sirarat;
Hur, Junguk;
Ozgur, Arzucan;
Burkhart, Keith;
He, Yongqun;
Omenn, Gilbert;
Athey, Brian;
Abernethy, Darrell

Publication type:

Article

Ontology-Based Combinatorial Comparative Analysis of Adverse Events Associated with Killed and Live Influenza Vaccines.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049941

By:

Sarntivijai, Sirarat;
Zuoshuang Xiang;
Shedden, Kerby A.;
Markel, Howard;
Omenn, Gilbert S.;
Athey, Brian D.;
Yongqun He

Publication type:

Article