Works by Sargolzaei, Mehdi

Results: 71

Exploring Tissue- and Sex-Specific DNA Methylation in Cattle Using a Pan-Mammalian Infinium Array.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 9, p. 4284, doi. 10.3390/ijms26094284

By:

Hu, Zhenbin;
Boschiero, Clarissa;
Neupane, Mahesh;
Bhowmik, Nayan;
Yang, Liu;
Kilian, Levi;
DeJarnette, James Mel;
Sargolzaei, Mehdi;
Harstine, Bo;
Li, Cong-Jun;
Tuo, Wenbin;
Baldwin VI, Ransom L.;
Van Tassell, Curtis P.;
Sattler, Charles G.;
Liu, George E.

Publication type:

Article

Genome-wide association studies for economically important traits in mink using copy number variation.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-023-50497-3

By:

Davoudi, Pourya;
Do, Duy Ngoc;
Colombo, Stefanie;
Rathgeber, Bruce;
Sargolzaei, Mehdi;
Plastow, Graham;
Wang, Zhiquan;
Hu, Guoyu;
Valipour, Shafagh;
Miar, Younes

Publication type:

Article

Swallow swarm optimization algorithm: a new method to optimization.

Published in:

Neural Computing & Applications, 2013, v. 23, n. 2, p. 429, doi. 10.1007/s00521-012-0939-9

By:

Neshat, Mehdi;
Sepidnam, Ghodrat;
Sargolzaei, Mehdi

Publication type:

Article

GWAS findings improved genomic prediction accuracy of lipid profile traits: Tehran Cardiometabolic Genetic Study.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85203-8

By:

Akbarzadeh, Mahdi;
Dehkordi, Saeid Rasekhi;
Roudbar, Mahmoud Amiri;
Sargolzaei, Mehdi;
Guity, Kamran;
Sedaghati-khayat, Bahareh;
Riahi, Parisa;
Azizi, Fereidoun;
Daneshpour, Maryam S.

Publication type:

Article

Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00510

By:

Butty, Adrien M.;
Sargolzaei, Mehdi;
Miglior, Filippo;
Stothard, Paul;
Schenkel, Flavio S.;
Gredler-Grandl, Birgit;
Baes, Christine F.

Publication type:

Article

Impact of whole-genome amplification on the reliability of pre-transfer cattle embryo breeding value estimates.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-889

By:

Saadi, Habib A Shojaei;
Vigneault, Christian;
Sargolzaei, Mehdi;
Gagné, Dominic;
Fournier, Éric;
de Montera, Béatrice;
Chesnais, Jacques;
Blondin, Patrick;
Robert, Claude

Publication type:

Article

Linkage disequilibrium and haplotype block structure in a composite beef cattle breed.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S7-S6

By:

Mokry, Fabiana Barichello;
Buzanskas, Marcos Eli;
de Alvarenga Mudadu, Maurício;
do Amaral Grossi, Daniela;
Higa, Roberto Hiroshi;
Vieira Ventura, Ricardo;
Oliveira de Lima, Andressa;
Sargolzaei, Mehdi;
Conceição Meirelles, Sarah Laguna;
Schenkel, Flávio Schramm;
Barbosa da Silva, Marcos Vinicius Gualberto;
Méo Niciura, Simone Cristina;
de Alencar, Maurício Mello;
Prado Munari, Danísio;
de Almeida Regitano, Luciana Correia

Publication type:

Article

A new approach for efficient genotype imputation using information from relatives.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-478

By:

Sargolzaei, Mehdi;
Chesnais, Jacques P.;
Schenkel, Flavio S.

Publication type:

Article

A genome-wide association study of immune response traits in Canadian Holstein cattle.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 559, doi. 10.1186/1471-2164-15-559

By:

Thompson-Crispi, Kathleen A;
Sargolzaei, Mehdi;
Ventura, Ricardo;
Abo-Ismail, Mohammed;
Miglior, Filippo;
Schenkel, Flavio;
Mallard, Bonnie A

Publication type:

Article

Study of whole genome linkage disequilibrium in Nellore cattle.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-305

By:

Espigolan, Rafael;
Baldi, Fernando;
Boligon, Arione A.;
Souza, Fabio R. P.;
Gordo, Daniel G. M.;
Tonussi, Rafael L.;
Cardoso, Diércles F.;
Oliveira, Henrique N.;
Tonhati, Humberto;
Sargolzaei, Mehdi;
Schenkel, Flavio S.;
Carvalheiro, Roberto;
Ferro, Jesus A.;
Albuquerque, Lucia G.

Publication type:

Article

Predication of concrete mix design using adaptive neural fuzzy inference systems and fuzzy inference systems.

Published in:

International Journal of Advanced Manufacturing Technology, 2012, v. 63, n. 1-4, p. 373, doi. 10.1007/s00170-012-3914-9

By:

Neshat, Mehdi;
Adeli, Ali;
Sepidnam, Ghodrat;
Sargolzaei, Mehdi

Publication type:

Article

Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0356-8

By:

Abo-Ismail, Mohammed K.;
Brito, Luiz F.;
Miller, Stephen P.;
Sargolzaei, Mehdi;
Grossi, Daniela A.;
Moore, Steve S.;
Plastow, Graham;
Stothard, Paul;
Nayeri, Shadi;
Schenkel, Flavio S.

Publication type:

Article

Characterization of runs of homozygosity islands in American mink using whole‐genome sequencing data.

Published in:

Journal of Animal Breeding & Genetics, 2024, v. 141, n. 5, p. 507, doi. 10.1111/jbg.12859

By:

Davoudi, Pourya;
Do, Duy Ngoc;
Rathgeber, Bruce;
Colombo, Stefanie;
Sargolzaei, Mehdi;
Plastow, Graham;
Wang, Zhiquan;
Miar, Younes

Publication type:

Article

Genome‐wide association studies for epistatic genetic effects on fertility and reproduction traits in Holstein cattle.

Published in:

Journal of Animal Breeding & Genetics, 2023, v. 140, n. 6, p. 624, doi. 10.1111/jbg.12813

By:

Alves, Kristen;
Brito, Luiz F.;
Sargolzaei, Mehdi;
Schenkel, Flavio S.

Publication type:

Article

Estimation of additive and non‐additive genetic effects for fertility and reproduction traits in North American Holstein cattle using genomic information.

Published in:

Journal of Animal Breeding & Genetics, 2020, v. 137, n. 3, p. 316, doi. 10.1111/jbg.12466

By:

Alves, Kristen;
Brito, Luiz F.;
Baes, Christine F.;
Sargolzaei, Mehdi;
Robinson, John Andrew B.;
Schenkel, Flavio S.

Publication type:

Article

Impact of including information from bulls and their daughters in the training population of multiple‐step genomic evaluations in dairy cattle: A simulation study.

Published in:

Journal of Animal Breeding & Genetics, 2019, v. 136, n. 6, p. 441, doi. 10.1111/jbg.12407

By:

de Oliveira, Hinayah Rojas;
Brito, Luiz Fernando;
Sargolzaei, Mehdi;
e Silva, Fabyano Fonseca;
Jamrozik, Janusz;
Lourenco, Daniela Andressa Lino;
Schenkel, Flavio Schramm

Publication type:

Article

A comprehensive comparison of high-density SNP panels and an alternative ultra-high-density panel for genomic analyses in Nellore cattle.

Published in:

Animal Production Science, 2020, v. 60, n. 3, p. 333, doi. 10.1071/AN18305

By:

Ventura, Ricardo V.;
Brito, Luiz F.;
Oliveira, Gerson A.;
Daetwyler, Hans D.;
Schenkel, Flavio S.;
Sargolzaei, Mehdi;
Vandervoort, Gordon;
Fonseca e Silva, Fabyano;
Miller, Stephen P.;
Carvalho, Minos E.;
Santana, Miguel H. A.;
Mattos, Elisangela C.;
Fonseca, Pablo;
Eler, Joanir P.;
Ferraz, Jose Bento Sterman

Publication type:

Article

A genome-wide association study for natural antibodies measured in blood of Canadian Holstein cows.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5062-6

By:

de Klerk, Britt;
Emam, Mehdi;
Thompson-Crispi, Kathleen A.;
Sargolzaei, Mehdi;
van der Poel, Johan J.;
Mallard, Bonnie A.

Publication type:

Article

Inbreeding and runs of homozygosity before and after genomic selection in North American Holstein cattle.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4453-z

By:

Forutan, Mehrnush;
Ansari Mahyari, Saeid;
Baes, Christine;
Melzer, Nina;
Schenkel, Flavio Schramm;
Sargolzaei, Mehdi

Publication type:

Article

Hepatitis Disease Diagnosis Using Hybrid Case Based Reasoning and Particle Swarm Optimization.

Published in:

ISRN Artificial Intelligence, 2012, v. 2012, p. 1, doi. 10.5402/2012/609718

By:

Neshat, Mehdi;
Sargolzaei, Mehdi;
Toosi, Adel Nadjaran;
Masoumi, Azrax

Publication type:

Article

Corrigendum: Population genomics of American mink using genotype data.

Published in:

Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1221683

By:

Guoyu Hu;
Duy Ngoc Do;
Manafiazar, Ghader;
Kelvin, Alyson A.;
Sargolzaei, Mehdi;
Plastow, Graham;
Zhiquan Wang;
Miar, Younes

Publication type:

Article

Population genomics of American mink using genotype data.

Published in:

Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1175408

By:

Guoyu Hu;
Duy Ngoc Do;
Manafiazar, Ghader;
Kelvin, Alyson A.;
Sargolzaei, Mehdi;
Plastow, Graham;
Zhiquan Wang;
Miar, Younes

Publication type:

Article

Opportunities for genomic selection in American mink: A simulation study.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0213873

By:

Karimi, Karim;
Sargolzaei, Mehdi;
Plastow, Graham Stuart;
Wang, Zhiquan;
Miar, Younes

Publication type:

Article

Unravelling transmission ratio distortion across the bovine genome: identification of candidate regions for reproduction defects.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09455-6

By:

Id-Lahoucine, Samir;
Casellas, Joaquim;
Suárez-Vega, Aroa;
Fonseca, Pablo A. S.;
Schenkel, Flavio S.;
Sargolzaei, Mehdi;
Cánovas, Angela

Publication type:

Article

Genome-wide detection of copy number variation in American mink using whole-genome sequencing.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08874-1

By:

Davoudi, Pourya;
Do, Duy Ngoc;
Rathgeber, Bruce;
Colombo, Stefanie M.;
Sargolzaei, Mehdi;
Plastow, Graham;
Wang, Zhiquan;
Karimi, Karim;
Hu, Guoyu;
Valipour, Shafagh;
Miar, Younes

Publication type:

Article

Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy.

Published in:

BMC Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12863-017-0588-1

By:

Larmer, Steven G.;
Sargolzaei, Mehdi;
Brito, Luiz F.;
Ventura, Ricardo V.;
Schenkel, Flávio S.

Publication type:

Article

Prediction of genomic breeding values for growth, carcass and meat quality traits in a multi-breed sheep population using a HD SNP chip.

Published in:

BMC Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12863-017-0476-8

By:

Brito, Luiz F.;
Clarke, Shannon M.;
McEwan, John C.;
Miller, Stephen P.;
Pickering, Natalie K.;
Bain, Wendy E.;
Dodds, Ken G.;
Sargolzaei, Mehdi;
Schenkel, Flávio S.

Publication type:

Article

Genetic diversity, extent of linkage disequilibrium and persistence of gametic phase in Canadian pigs.

Published in:

BMC Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12863-017-0473-y

By:

Grossi, Daniela A.;
Jafarikia, Mohsen;
Brito, Luiz F.;
Buzanskas, Marcos E.;
Sargolzaei, Mehdi

Publication type:

Article

Genomic predictions for economically important traits in Brazilian Braford and Hereford beef cattle using true and imputed genotypes.

Published in:

BMC Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12863-017-0475-9

By:

Piccoli, Mario L.;
Brito, Luiz F.;
Braccini, José;
Cardoso, Fernando F.;
Sargolzaei, Mehdi;
Schenkel, Flávio S.

Publication type:

Article

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle.

Published in:

BMC Genetics, 2016, v. 17, p. 1, doi. 10.1186/s12863-016-0386-1

By:

Nayeri, Shadi;
Sargolzaei, Mehdi;
Abo-Ismail, Mohammed K.;
May, Natalie;
Miller, Stephen P.;
Schenkel, Flavio;
Moore, Stephen S.;
Stothard, Paul

Publication type:

Article

Identification of consensus homozygous regions and their associations with growth and feed efficiency traits in American mink.

Published in:

BMC Genomic Data, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12863-024-01252-8

By:

Davoudi, Pourya;
Do, Duy Ngoc;
Rathgeber, Bruce;
Colombo, Stefanie;
Sargolzaei, Mehdi;
Plastow, Graham;
Wang, Zhiquan;
Miar, Younes

Publication type:

Article

Comparison of four direct algorithms for computing inbreeding coefficients.

Published in:

Animal Science Journal, 2005, v. 76, n. 5, p. 401, doi. 10.1111/j.1740-0929.2005.00282.x

By:

Sargolzaei, Mehdi;
Iwaisaki, Hiroaki

Publication type:

Article

Genetic and Phenotypic Parameters for Pelt Quality and Body Length and Weight Traits in American Mink.

Published in:

Animals (2076-2615), 2022, v. 12, n. 22, p. 3184, doi. 10.3390/ani12223184

By:

Valipour, Shafagh;
Karimi, Karim;
Barrett, David;
Do, Duy Ngoc;
Hu, Guoyu;
Sargolzaei, Mehdi;
Wang, Zhiquan;
Miar, Younes

Publication type:

Article

Whole-Genome Signatures of Selection in Sport Horses Revealed Selection Footprints Related to Musculoskeletal System Development Processes.

Published in:

Animals (2076-2615), 2020, v. 10, n. 1, p. 53, doi. 10.3390/ani10010053

By:

Salek Ardestani, Siavash;
Aminafshar, Mehdi;
Zandi Baghche Maryam, Mohammad Bagher;
Banabazi, Mohammad Hossein;
Sargolzaei, Mehdi;
Miar, Younes

Publication type:

Article

Marginal ancestral contributions to atrial fibrillation in the Standardbred racehorse: Comparison of cases and controls.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197137

By:

Kraus, Megan;
Physick-Sheard, Peter;
Brito, Luiz F.;
Sargolzaei, Mehdi;
Schenkel, Flávio S.

Publication type:

Article

Signatures of selection analysis using whole-genome sequence data reveals novel candidate genes for pony and light horse types.

Published in:

Genome, 2020, v. 63, n. 8, p. 387, doi. 10.1139/gen-2020-0001

By:

Salek Ardestani, Siavash;
Aminafshar, Mehdi;
Zandi Baghche Maryam, Mohammad Bagher;
Banabazi, Mohammad Hossein;
Sargolzaei, Mehdi;
Miar, Younes

Publication type:

Article

Association analysis for feed efficiency traits in beef cattle using preserved haplotypes<sup>1</sup>.

Published in:

Genome, 2013, v. 56, n. 10, p. 586, doi. 10.1139/gen-2013-0072

By:

Lu, Duc;
Sargolzaei, Mehdi;
Li, Changxi;
Abo-Ismail, Mohammed;
Vander Voort, Gordon;
Wang, Zhiquan;
Plastow, Graham;
Moore, Stephen;
Miller, Stephen P.;
Scherer, Steve

Publication type:

Article

Genome-wide association analyses for carcass quality in crossbred beef cattle.

Published in:

BMC Genetics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2156-14-80

By:

Lu, Duc;
Sargolzaei, Mehdi;
Kelly, Matthew;
Voort, Gordon Vander;
Zhiquan Wang;
Mandell, Ira;
Moore, Stephen;
Plastow, Graham;
Miller, Stephen Paul

Publication type:

Article

Accuracy of genotype imputation in Nelore cattle.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/s12711-014-0069-1

By:

Carvalheiro, Roberto;
Boison, Solomon A.;
Neves, Haroldo H. R.;
Sargolzaei, Mehdi;
Schenkel, Flavio S.;
Utsunomiya, Yuri T.;
Pérez O'Brien, Ana Maria;
Sölkner, Johann;
McEwan, John C.;
Van Tassell, Curtis P.;
Sonstegard, Tad S.;
Garcia, José Fernando

Publication type:

Article

QMSim: a large-scale genome simulator for livestock.

Published in:

Bioinformatics, 2009, v. 25, n. 5, p. 680, doi. 10.1093/bioinformatics/btp045

By:

Mehdi Sargolzaei;
Flavio S Schenkel

Publication type:

Article

A chromosome-level genome assembly reveals genomic characteristics of the American mink (Neogale vison).

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-04341-5

By:

Karimi, Karim;
Do, Duy Ngoc;
Wang, Jingy;
Easley, John;
Borzouie, Shima;
Sargolzaei, Mehdi;
Plastow, Graham;
Wang, Zhiquan;
Miar, Younes

Publication type:

Article

Transcriptomics of chicken cecal tonsils and intestine after infection with low pathogenic avian influenza virus H9N2.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-99182-3

By:

Alqazlan, Nadiyah;
Emam, Mehdi;
Nagy, Éva;
Bridle, Byram;
Sargolzaei, Mehdi;
Sharif, Shayan

Publication type:

Article

Identifying selection signatures for immune response and resilience to Aleutian disease in mink using genotype data.

Published in:

Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1370891

By:

Guoyu Hu;
Duy Ngoc Do;
Manafiazar, Ghader;
Kelvin, Alyson A.;
Sargolzaei, Mehdi;
Plastow, Graham;
Zhiquan Wang;
Davoudi, Pourya;
Miar, Younes

Publication type:

Article

A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project.

Published in:

GigaScience, 2015, v. 4, p. 1, doi. 10.1186/s13742-015-0090-5

By:

Stothard, Paul;
Xiaoping Liao;
Arantes, Adriano S.;
De Pauw, Mary;
Coros, Colin;
Plastow, Graham S.;
Sargolzaei, Mehdi;
Crowley, John J.;
Basarab, John A.;
Schenkel, Flavio;
Moore, Stephen;
Miller, Stephen P.

Publication type:

Article

Genomic Prediction of Average Daily Gain, Back-Fat Thickness, and Loin Muscle Depth Using Different Genomic Tools in Canadian Swine Populations.

Published in:

Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.665344

By:

Salek Ardestani, Siavash;
Jafarikia, Mohsen;
Sargolzaei, Mehdi;
Sullivan, Brian;
Miar, Younes

Publication type:

Article

Linkage Disequilibrium, Effective Population Size and Genomic Inbreeding Rates in American Mink Using Genotyping-by-Sequencing Data.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00223

By:

Karimi, Karim;
Farid, A. Hossain;
Sargolzaei, Mehdi;
Myles, Sean;
Miar, Younes

Publication type:

Article

Association of Apolipoprotein B and Adiponectin Receptor 1 Genes with Carcass, Bone Integrity and Performance Traits in a Paternal Broiler Line.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0136824

By:

Cruz, Valdecy Aparecida Rocha da;
Schenkel, Flávio Schramm;
Savegnago, Rodrigo Pelicioni;
Grupioni, Natalia Vinhal;
Stafuzza, Nedenia Bonvino;
Sargolzaei, Mehdi;
Ibelli, Adriana Mércia Guaratini;
Peixoto, Jane de Oliveira;
Ledur, Mônica Corrêa;
Munari, Danísio Prado

Publication type:

Article

Impact of Genotype Imputation on the Performance of GBLUP and Bayesian Methods for Genomic Prediction.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101544

By:

Chen, Liuhong;
Li, Changxi;
Sargolzaei, Mehdi;
Schenkel, Flavio

Publication type:

Article

Genome-Wide Association for Growth Traits in Canchim Beef Cattle.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094802

By:

Buzanskas, Marcos E.;
Grossi, Daniela A.;
Ventura, Ricardo V.;
Schenkel, Flávio S.;
Sargolzaei, Mehdi;
Meirelles, Sarah L. C.;
Mokry, Fabiana B.;
Higa, Roberto H.;
Mudadu, Maurício A.;
da Silva, Marcos V. G. Barbosa.;
Niciura, Simone C. M.;
Júnior, Roberto A. A. Torres.;
Alencar, Maurício M.;
Regitano, Luciana C. A.;
Munari, Danísio P.

Publication type:

Article

Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3610-0

By:

Brito, Luiz F.;
Kijas, James W.;
Ventura, Ricardo V.;
Sargolzaei, Mehdi;
Porto-Neto, Laercio R.;
Cánovas, Angela;
Feng, Zeny;
Jafarikia, Mohsen;
Schenkel, Flávio S.

Publication type:

Article