Works matching AU Santoro, Alyson E

Results: 42

Metabolite release by nitrifiers facilitates metabolic interactions in the ocean.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae172

By:

Bayer, Barbara;
Liu, Shuting;
Louie, Katherine;
Northen, Trent R;
Wagner, Michael;
Daims, Holger;
Carlson, Craig A;
Santoro, Alyson E

Publication type:

Article

Direct observations of microbial community succession on sinking marine particles.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad010

By:

Stephens, Brandon M;
Durkin, Colleen A;
Sharpe, Garrett;
Nguyen, Trang T H;
Albers, Justine;
Estapa, Margaret L;
Steinberg, Deborah K;
Levine, Naomi M;
Gifford, Scott M;
Carlson, Craig A;
Boyd, Philip W;
Santoro, Alyson E

Publication type:

Article

Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota.

Published in:

Environmental Microbiology, 2023, v. 25, n. 3, p. 689, doi. 10.1111/1462-2920.16299

By:

Parada, Alma E.;
Mayali, Xavier;
Weber, Peter K.;
Wollard, Jessica;
Santoro, Alyson E.;
Fuhrman, Jed A.;
Pett‐Ridge, Jennifer;
Dekas, Anne E.

Publication type:

Article

Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys.

Published in:

Environmental Microbiology, 2020, v. 22, n. 1, p. 499, doi. 10.1111/1462-2920.14870

By:

Weber, Laura;
González‐Díaz, Patricia;
Armenteros, Maickel;
Ferrer, Víctor M.;
Bretos, Fernando;
Bartels, Erich;
Santoro, Alyson E.;
Apprill, Amy

Publication type:

Article

Distinct phytoplankton assemblages underlie hotspots of primary production in the eastern North Pacific Ocean.

Published in:

Limnology & Oceanography, 2025, v. 70, n. 2, p. 477, doi. 10.1002/lno.12771

By:

Jimenez, Valeria;
Sudek, Sebastian;
Eckmann, Charlotte;
Bachy, Charles;
Poirier, Camille;
Wittmers, Fabian;
Santoro, Alyson E.;
Follows, Michael J.;
Chavez, Francisco P.;
Shilova, Irina;
Worden, Alexandra Z.

Publication type:

Article

Carbon content, carbon fixation yield and dissolved organic carbon release from diverse marine nitrifiers.

Published in:

Limnology & Oceanography, 2023, v. 68, n. 1, p. 84, doi. 10.1002/lno.12252

By:

Bayer, Barbara;
McBeain, Kelsey;
Carlson, Craig A.;
Santoro, Alyson E.

Publication type:

Article

Nitrification and nitrous oxide dynamics in the Southern California Bight.

Published in:

Limnology & Oceanography, 2021, v. 66, n. 4, p. 1099, doi. 10.1002/lno.11667

By:

Laperriere, Sarah M.;
Morando, Michael;
Capone, Douglas G.;
Gunderson, Troy;
Smith, Jason M.;
Santoro, Alyson E.

Publication type:

Article

Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation.

Published in:

Limnology & Oceanography, 2017, v. 62, n. 5, p. 1984, doi. 10.1002/lno.10547

By:

Santoro, Alyson E.;
Saito, Mak A.;
Goepfert, Tyler J.;
Lamborg, Carl H.;
Dupont, Chris L.;
DiTullio, Giacomo R.

Publication type:

Article

Multifaceted impacts of the stony coral Porites astreoides on picoplankton abundance and community composition.

Published in:

Limnology & Oceanography, 2017, v. 62, n. 1, p. 217, doi. 10.1002/lno.10389

By:

McNally, Sean P.;
Parsons, Rachel J.;
Santoro, Alyson E.;
Apprill, Amy

Publication type:

Article

Oxygen isotopic composition of nitrate and nitrite produced by nitrifying cocultures and natural marine assemblages.

Published in:

Limnology & Oceanography, 2012, v. 57, n. 5, p. 1361, doi. 10.4319/lo.2012.57.5.1361

By:

Buchwald, Carolyn;
Santoro, Alyson E.;
McIlvin, Matthew R.;
Casciotti, Karen L.

Publication type:

Article

Contrasting spring and summer phytoplankton dynamics in the nearshore Southern California Bight.

Published in:

Limnology & Oceanography, 2010, v. 55, n. 1, p. 21, doi. 10.4319/lo.2010.55.1.0264

By:

Santoro, Alyson E.;
Nidzieko, Nicholas J.;
Van Dijken, Gert L.;
Arrigo, Kevin R.;
Boehm, Alexandria B.

Publication type:

Article

Patterns of thaumarchaeal gene expression in culture and diverse marine environments.

Published in:

Environmental Microbiology, 2018, v. 20, n. 6, p. 2112, doi. 10.1111/1462-2920.14107

By:

Carini, Paul;
Dupont, Christopher L.;
Santoro, Alyson E.

Publication type:

Article

Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing.

Published in:

Environmental Microbiology, 2018, v. 20, n. 2, p. 815, doi. 10.1111/1462-2920.14018

By:

Orsi, William D.;
Wilken, Susanne;
del Campo, Javier;
Heger, Thierry;
James, Erick;
Richards, Thomas A.;
Keeling, Patrick J.;
Worden, Alexandra Z.;
Santoro, Alyson E.

Publication type:

Article

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current.

Published in:

Environmental Microbiology, 2010, v. 12, n. 7, p. 1989, doi. 10.1111/j.1462-2920.2010.02205.x

By:

Santoro, Alyson E.;
Casciotti, Karen L.;
Francis, Christopher A.

Publication type:

Article

Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary.

Published in:

Environmental Microbiology, 2008, v. 10, n. 4, p. 1068, doi. 10.1111/j.1462-2920.2007.01547.x

By:

Santoro, Alyson E.;
Francis, Christopher A.;
de Sieyes, Nicholas R.;
Boehm, Alexandria B.

Publication type:

Article

Frequent occurrence of the human-specific Bacteroides fecal marker at an open coast marine beach: relationship to waves, tides and traditional indicators.

Published in:

Environmental Microbiology, 2007, v. 9, n. 8, p. 2038, doi. 10.1111/j.1462-2920.2007.01319.x

By:

Santoro, Alyson E.;
Boehm, Alexandria B.

Publication type:

Article

Database of nitrification and nitrifiers in the global ocean.

Published in:

Earth System Science Data, 2023, v. 15, n. 11, p. 5039, doi. 10.5194/essd-15-5039-2023

By:

Tang, Weiyi;
Ward, Bess B.;
Beman, Michael;
Bristow, Laura;
Clark, Darren;
Fawcett, Sarah;
Frey, Claudia;
Fripiat, François;
Herndl, Gerhard J.;
Mdutyana, Mhlangabezi;
Paulot, Fabien;
Peng, Xuefeng;
Santoro, Alyson E.;
Shiozaki, Takuhei;
Sintes, Eva;
Stock, Charles;
Sun, Xin;
Wan, Xianhui S.;
Xu, Min N.;
Zhang, Yao

Publication type:

Article

Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 4, p. 1025, doi. 10.1038/s41396-020-00828-3

By:

Bayer, Barbara;
Saito, Mak A.;
McIlvin, Matthew R.;
Lücker, Sebastian;
Moran, Dawn M.;
Lankiewicz, Thomas S.;
Dupont, Christopher L.;
Santoro, Alyson E.

Publication type:

Article

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 4, p. 984, doi. 10.1038/s41396-019-0581-y

By:

Rodríguez-Martínez, Raquel;
Leonard, Guy;
Milner, David S.;
Sudek, Sebastian;
Conway, Mike;
Moore, Karen;
Hudson, Theresa;
Mahé, Frédéric;
Keeling, Patrick J.;
Santoro, Alyson E.;
Worden, Alexandra Z.;
Richards, Thomas A.

Publication type:

Article

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 1, p. 304, doi. 10.1038/ismej.2017.167

By:

Strassert, Jürgen F H;
Karnkowska, Anna;
Hehenberger, Elisabeth;
del Campo, Javier;
Kolisko, Martin;
Okamoto, Noriko;
Burki, Fabien;
Janouškovec, Jan;
Poirier, Camille;
Leonard, Guy;
Hallam, Steven J;
Richards, Thomas A;
Worden, Alexandra Z;
Santoro, Alyson E;
Keeling, Patrick J

Publication type:

Article

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 9, p. 2158, doi. 10.1038/ismej.2016.20

By:

Orsi, William D;
Smith, Jason M;
Liu, Shuting;
Liu, Zhanfei;
Sakamoto, Carole M;
Wilken, Susanne;
Poirier, Camille;
Richards, Thomas A;
Keeling, Patrick J;
Worden, Alexandra Z;
Santoro, Alyson E

Publication type:

Article

Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 8, p. 1747, doi. 10.1038/ismej.2014.260

By:

Orsi, William D;
Smith, Jason M;
Wilcox, Heather M;
Swalwell, Jarred E;
Carini, Paul;
Worden, Alexandra Z;
Santoro, Alyson E

Publication type:

Article

Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 11, p. 1796, doi. 10.1038/ismej.2011.58

By:

Santoro, Alyson E;
Casciotti, Karen L

Publication type:

Article

Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods.

Published in:

Journal of Eukaryotic Microbiology, 2019, v. 66, n. 4, p. 574, doi. 10.1111/jeu.12701

By:

Strassert, Jürgen F.H.;
Hehenberger, Elisabeth;
Campo, Javier;
Okamoto, Noriko;
Kolisko, Martin;
Richards, Thomas A.;
Worden, Alexandra Z.;
Santoro, Alyson E.;
Keeling, Patrick J.

Publication type:

Article

A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.

Published in:

Journal of Eukaryotic Microbiology, 2019, v. 66, n. 3, p. 519, doi. 10.1111/jeu.12679

By:

Okamoto, Noriko;
Gawryluk, Ryan M.R.;
Campo, Javier;
Strassert, Jürgen F.H.;
Lukeš, Julius;
Richards, Thomas A.;
Worden, Alexandra Z.;
Santoro, Alyson E.;
Keeling, Patrick J.

Publication type:

Article

Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean.

Published in:

Nature Geoscience, 2020, v. 13, n. 5, p. 355, doi. 10.1038/s41561-020-0565-6

By:

Saito, Mak A.;
McIlvin, Matthew R.;
Moran, Dawn M.;
Santoro, Alyson E.;
Dupont, Chris L.;
Rafter, Patrick A.;
Saunders, Jaclyn K.;
Kaul, Drishti;
Lamborg, Carl H.;
Westley, Marian;
Valois, Frederica;
Waterbury, John B.

Publication type:

Article

Microbial strong organic ligand production is tightly coupled to iron in 1 hydrothermal plumes.

Published in:

Biogeosciences Discussions, 2023, p. 1, doi. 10.1101/2023.01.05.522639

By:

Hoffman, Colleen L.;
Monreal, Patrick J.;
Albers, Justine B.;
Lough, Alastair J. M.;
Santoro, Alyson E.;
Mellett, Travis;
Buck, Kristen N.;
Tagliabue, Alessandro;
Lohan, Maeve C.;
Resing, Joseph A.;
Bundy, Randelle M.

Publication type:

Article

Observations of Variable Ammonia Oxidation and Nitrous Oxide Flux in a Eutrophic Estuary.

Published in:

Estuaries & Coasts, 2019, v. 42, n. 1, p. 33, doi. 10.1007/s12237-018-0441-4

By:

Laperriere, Sarah M.;
Nidzieko, Nicholas J.;
Fox, Rebecca J.;
Fisher, Alexander W.;
Santoro, Alyson E.

Publication type:

Article

Shifts in the Isotopic Composition of Nitrous Oxide Between El Niño and La Niña in the Eastern Tropical South Pacific.

Published in:

Global Biogeochemical Cycles, 2023, v. 37, n. 10, p. 1, doi. 10.1029/2023GB007959

By:

Gluschankoff, Noah;
Santoro, Alyson E.;
Buchwald, Carolyn;
Casciotti, Karen L.

Publication type:

Article

Synechococcus nitrogen gene loss in iron-limited ocean regions.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00314-9

By:

Sharpe, Garrett;
Zhao, Liang;
Meyer, Meredith G.;
Gong, Weida;
Burns, Shannon M.;
Tagliabue, Allesandro;
Buck, Kristen N.;
Santoro, Alyson E.;
Graff, Jason R.;
Marchetti, Adrian;
Gifford, Scott

Publication type:

Article

Crystal ball: the microbial map of the ocean.

Published in:

Environmental Microbiology Reports, 2019, v. 11, n. 1, p. 35, doi. 10.1111/1758-2229.12721

By:

Santoro, Alyson E.

Publication type:

Article

Microbial strong organic-ligand production is tightly coupled to iron in hydrothermal plumes.

Published in:

Biogeosciences, 2024, v. 21, n. 22, p. 5233, doi. 10.5194/bg-21-5233-2024

By:

Hoffman, Colleen L.;
Monreal, Patrick J.;
Albers, Justine B.;
Lough, Alastair J. M.;
Santoro, Alyson E.;
Mellett, Travis;
Buck, Kristen N.;
Tagliabue, Alessandro;
Lohan, Maeve C.;
Resing, Joseph A.;
Bundy, Randelle M.

Publication type:

Article

The Dawn of the BioGeoSCAPES Program.

Published in:

Oceanography, 2024, v. 37, n. 2, p. 162, doi. 10.5670/oceanog.2024.417

By:

Saito, Mak A.;
Alexander, Harriet;
Benway, Heather M.;
Boyd, Philip W.;
Gledhill, Martha;
Kujawinski, Elizabeth B.;
Levine, Naomi M.;
Maheigan, Mai;
Marchetti, Adrian;
Obernosterer, Ingrid;
Santoro, Alyson E.;
Dalin Shi;
Koji Suzuki;
Tagliabue, Alessandro;
Twining, Benjamin S.;
Maldonado, Maria T.

Publication type:

Article

Database of nitrification and nitrifiers in the global ocean.

Published in:

Earth System Science Data Discussions, 2023, p. 1, doi. 10.5194/essd-2023-194

By:

Weiyi Tang;
Ward, Bess B.;
Beman, Michael;
Bristow, Laura;
Clark, Darren;
Fawcett, Sarah;
Frey, Claudia;
Fripiat, Francois;
Herndl, Gerhard J.;
Mdutyana, Mhlangabezi;
Paulot, Fabien;
Xuefeng Peng;
Santoro, Alyson E.;
Takuhei Shiozaki;
Sintes, Eva;
Stock, Charles;
Xin Sun;
Wan, Xianhui S.;
Xu, Min N.;
Yao Zhang

Publication type:

Article

Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 12, p. 2417, doi. 10.1093/gbe/evaa196

By:

Cooney, Elizabeth C;
Okamoto, Noriko;
Cho, Anna;
Hehenberger, Elisabeth;
Richards, Thomas A;
Santoro, Alyson E;
Worden, Alexandra Z;
Leander, Brian S;
Keeling, Patrick J

Publication type:

Article

Nitrification and Nitrous Oxide Production in the Offshore Waters of the Eastern Tropical South Pacific.

Published in:

Global Biogeochemical Cycles, 2021, v. 35, n. 2, p. 1, doi. 10.1029/2020GB006716

By:

Santoro, Alyson E.;
Buchwald, Carolyn;
Knapp, Angela N.;
Berelson, William M.;
Capone, Douglas G.;
Casciotti, Karen L.

Publication type:

Article

Nitrogen cycling in the secondary nitrite maximum of the eastern tropical North Pacific off Costa Rica.

Published in:

Global Biogeochemical Cycles, 2015, v. 29, n. 12, p. 2061, doi. 10.1002/2015GB005187

By:

Buchwald, Carolyn;
Santoro, Alyson E.;
Stanley, Rachel H. R.;
Casciotti, Karen L.

Publication type:

Article

Permeability selection of biologically relevant membranes matches the stereochemistry of life on Earth.

Published in:

PLoS Biology, 2025, v. 23, n. 5, p. 1, doi. 10.1371/journal.pbio.3003155

By:

Goode, Olivia;
Łapińska, Urszula;
Morimoto, Juliano;
Glover, Georgina;
Milner, David S.;
Santoro, Alyson E.;
Pagliara, Stefano;
Richards, Thomas A.

Publication type:

Article

Reconstructing the last common ancestor of all eukaryotes.

Published in:

PLoS Biology, 2024, v. 22, n. 11, p. 1, doi. 10.1371/journal.pbio.3002917

By:

Richards, Thomas A.;
Eme, Laura;
Archibald, John M.;
Leonard, Guy;
Coelho, Susana M.;
de Mendoza, Alex;
Dessimoz, Christophe;
Dolezal, Pavel;
Fritz-Laylin, Lillian K.;
Gabaldón, Toni;
Hampl, Vladimír;
Kops, Geert J. P. L.;
Leger, Michelle M.;
Lopez-Garcia, Purificacion;
McInerney, James O.;
Moreira, David;
Muñoz-Gómez, Sergio A.;
Richter, Daniel J.;
Ruiz-Trillo, Iñaki;
Santoro, Alyson E.

Publication type:

Article

Controls on the relative abundances and rates of nitrifying microorganisms in the ocean.

Published in:

Biogeosciences, 2022, v. 19, n. 23, p. 5401, doi. 10.5194/bg-19-5401-2022

By:

Zakem, Emily J.;
Bayer, Barbara;
Qin, Wei;
Santoro, Alyson E.;
Zhang, Yao;
Levine, Naomi M.

Publication type:

Article

Systematic comparison of unilamellar vesicles reveals that archaeal core lipid membranes are more permeable than bacterial membranes.

Published in:

PLoS Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1371/journal.pbio.3002048

By:

Łapińska, Urszula;
Glover, Georgina;
Kahveci, Zehra;
Irwin, Nicholas A. T.;
Milner, David S.;
Tourte, Maxime;
Albers, Sonja-Verena;
Santoro, Alyson E.;
Richards, Thomas A.;
Pagliara, Stefano

Publication type:

Article

Microbial communities can predict the ecological condition of headwater streams.

Published in:

PLoS ONE, 2020, v. 15, n. 8, p. 1, doi. 10.1371/journal.pone.0236932

By:

Hilderbrand, Robert H.;
Keller, Stephen R.;
Laperriere, Sarah M.;
Santoro, Alyson E.;
Cessna, Jason;
Trott, Regina

Publication type:

Article