Works matching AU Sanford, Jeremy R.

Results: 21

The 3' end of the story: deciphering combinatorial interactions that control mRNA fate.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1360-6

By:

Jeremy R. Sanford;
Luiz O. F. Penalva

Publication type:

Article

Prioritizing single-nucleotide variations that potentially regulate alternative splicing.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S40

By:

Mingxiang Teng;
Yadong Wang;
Guohua Wang;
Jeesun Jung;
Edenberg, Howard J.;
Sanford, Jeremy R.;
Yunlong Liu

Publication type:

Article

DNA Methyltransferase Protein Synthesis Is Reduced in CXXC Finger Protein 1–Deficient Embryonic Stem Cells.

Published in:

DNA & Cell Biology, 2009, v. 28, n. 5, p. 223, doi. 10.1089/dna.2009.0854

By:

Butler, Jill S.;
Palam, Lakshmi R.;
Tate, Courtney M.;
Sanford, Jeremy R.;
Wek, Ronald C.;
Skalnik, David G.

Publication type:

Article

RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation.

Published in:

2016

By:

Palanichamy, Jayanth Kumar;
Tran, Tiffany M.;
Howard, Jonathan M.;
Contreras, Jorge R.;
Fernando, Thilini R.;
Sterne-Weiler, Timothy;
Katzman, Sol;
Toloue, Masoud;
Weihong Yan;
Basso, Giuseppe;
Pigazzi, Martina;
Sanford, Jeremy R.;
Rao, Dinesh S.;
Yan, Weihong

Publication type:

journal article

Distinct oncogenic phenotypes in hematopoietic specific deletions of Trp53.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33949-8

By:

Palanichamy, Jayanth Kumar;
Tran, Tiffany M.;
King, Jennifer K.;
Katzman, Sol;
Ritter, Alexander J.;
Sharma, Gunjan;
Tso, Christine;
Contreras, Jorge R.;
Fernando, Thilini R.;
Sanford, Jeremy R.;
Rao, Dinesh S.

Publication type:

Article

A potential role for SARS-CoV-2 small viral RNAs in targeting host microRNAs and modulating gene expression.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-26135-9

By:

Neeb, Zachary T.;
Ritter, Alexander J.;
Chauhan, Lokendra V.;
Katzman, Sol;
Lipkin, W. Ian;
Mishra, Nischay;
Sanford, Jeremy R.

Publication type:

Article

The Wilms' tumour protein (WT1) shuttles between nucleus and cytoplasm and is present in functional polysomes.

Published in:

Human Molecular Genetics, 2004, v. 13, n. 4, p. 463

By:

Niksic, Martina;
Slight, Joan;
Sanford, Jeremy R.;
Caceres, Javier F.;
Hastie, Nicholas D.

Publication type:

Article

Site identification in high-throughput RNA–protein interaction data.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3013, doi. 10.1093/bioinformatics/bts569

By:

Uren, Philip J.;
Bahrami-Samani, Emad;
Burns, Suzanne C.;
Qiao, Mei;
Karginov, Fedor V.;
Hodges, Emily;
Hannon, Gregory J.;
Sanford, Jeremy R.;
Penalva, Luiz O. F.;
Smith, Andrew D.

Publication type:

Article

Splicing factor TRA2B is required for neural progenitor survival.

Published in:

Journal of Comparative Neurology, 2014, v. 522, n. 2, p. 372, doi. 10.1002/cne.23405

By:

Roberts, Jacqueline M.;
Ennajdaoui, Hanane;
Edmondson, Carina;
Wirth, Brunhilde;
Sanford, Jeremy R.;
Chen, Bin

Publication type:

Article

534. Optimising Expression Cassettes for Vascular Gene Expression

Published in:

2005

By:

White, Stephen J.;
Roberts, Melanie A.;
Sanford, Jeremy R.;
Cáceres, Javier F.;
Newby, Andrew C.

Publication type:

Abstract

An intronic RNA element modulates Factor VIII exon-16 splicing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 300, doi. 10.1093/nar/gkad1034

By:

Tse, Victor;
Chacaltana, Guillermo;
Gutierrez, Martin;
Forino, Nicholas M;
Jimenez, Arcelia G;
Tao, Hanzhang;
Do, Phong H;
Oh, Catherine;
Chary, Priyanka;
Quesada, Isabel;
Hamrick, Antonia;
Lee, Sophie;
Stone, Michael D;
Sanford, Jeremy R

Publication type:

Article

Modulation of nonsense mediated decay by rapamycin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3448, doi. 10.1093/nar/gkw1109

By:

Martinez-Nunez, Rocio T.;
Wallace, Andrew;
Coyne, Doyle;
Jansson, Linnea;
Rush, Miles;
Ennajdaoui, Hanane;
Katzman, Sol;
Bailey, Joanne;
Deinhardt, Katrin;
Sanchez-Elsner, Tilman;
Sanford, Jeremy R.

Publication type:

Article

Exon identity crisis: disease-causing mutations that disrupt the splicing code.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 201, doi. 10.1186/gb4150

By:

Sterne-Weiler, Timothy;
Sanford, Jeremy R

Publication type:

Article

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r19

By:

Mort, Matthew;
Sterne-Weiler, Tim;
Biao Li;
Ball, Edward V.;
Cooper, David N.;
Radivojac, Predrag;
Sanford, Jeremy R.;
Mooney, Sean D.

Publication type:

Article

Concerted regulation of nuclear and cytoplasmic activities of SR proteins by AKT.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 12, p. 1037, doi. 10.1038/nsmb1020

By:

Blaustein, Matías;
Pelisch, Federico;
Tanos, Tamara;
Muñoz, Manuel J.;
Wengier, Diego;
Quadrana, Leandro;
Sanford, Jeremy R.;
Muschietti, Jorge P.;
Kornblihtt, Alberto R.;
Cáceres, Javier F.;
Coso, Omar A.;
Srebrow, Anabella

Publication type:

Article

junctionCounts: comprehensive alternative splicing analysis and prediction of isoform-level impacts to the coding sequence.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae093

By:

Ritter, Alexander J;
Wallace, Andrew;
Ronaghi, Neda;
Sanford, Jeremy R

Publication type:

Article

The RNAissance family: SR proteins as multifaceted regulators of gene expression.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2015, v. 6, n. 1, p. 93, doi. 10.1002/wrna.1260

By:

Howard, Jonathan M.;
Sanford, Jeremy R.

Publication type:

Article

Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF.

Published in:

PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003369

By:

Sanford, Jeremy R.;
Coutinho, Pedro;
Hackett, Jamie A.;
Xin Wang;
Ranahan, William;
Caceres, Javier F.

Publication type:

Article

Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1.

Published in:

BMC Genomics, 2011, v. 12, n. Suppl 5, p. 1, doi. 10.1186/1471-2164-12-S5-S8

By:

Xin Wang;
Liran Juan;
Junjie Lv;
Kejun Wang;
Sanford, Jeremy R.;
Yunlong Liu

Publication type:

Article

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S1-S4

By:

Xin Wang;
Kejun Wang;
Radovich, Milan;
Yue Wang;
Guohua Wang;
Weixing Feng;
Sanford, Jeremy R.;
Yunlong Liu

Publication type:

Article

Using RNase sequence specificity to refine the identification of RNA-protein binding regions.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S1-S17

By:

Xin Wang;
Guohua Wang;
Changyu Shen;
Lang Li;
Xinguo Wang;
Mooney, Sean D.;
Edenberg, Howard J.;
Sanford, Jeremy R.;
Yunlong Liu

Publication type:

Article