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Editorial: Genomic Colocalization and Enrichment Analyses.
- Published in:
- 2021
- By:
- Publication type:
- Editorial
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1748-z
- By:
- Publication type:
- Article
The rainfall plot: its motivation, characteristics and pitfalls.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1679-8
- By:
- Publication type:
- Article
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 10, p. 5164, doi. 10.1093/nar/gkt227
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- Publication type:
- Article
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks.
- Published in:
- PLoS ONE, 2023, v. 18, n. 7, p. 1, doi. 10.1371/journal.pone.0286330
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- Publication type:
- Article
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data.
- Published in:
- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad610
- By:
- Publication type:
- Article
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking.
- Published in:
- Bioinformatics, 2022, v. 38, n. 21, p. 4994, doi. 10.1093/bioinformatics/btac612
- By:
- Publication type:
- Article
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.
- Published in:
- Bioinformatics, 2022, v. 38, n. 17, p. 4230, doi. 10.1093/bioinformatics/btac505
- By:
- Publication type:
- Article
Effects of prenatal exposure to (es)citalopram and maternal depression during pregnancy on DNA methylation and child neurodevelopment.
- Published in:
- Translational Psychiatry, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41398-023-02441-2
- By:
- Publication type:
- Article
Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01299-3
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- Publication type:
- Article
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes.
- Published in:
- PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133280
- By:
- Publication type:
- Article
ClusTrack: Feature Extraction and Similarity Measures for Clustering of Genome-Wide Data Sets.
- Published in:
- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123261
- By:
- Publication type:
- Article
Transcriptionally Active Regions Are the Preferred Targets for Chromosomal HPV Integration in Cervical Carcinogenesis.
- Published in:
- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119566
- By:
- Publication type:
- Article
Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0043840
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- Publication type:
- Article
Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells.
- Published in:
- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032281
- By:
- Publication type:
- Article
Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq.
- Published in:
- PLoS ONE, 2021, v. 16, n. 10, p. 1, doi. 10.1371/journal.pone.0258029
- By:
- Publication type:
- Article
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3414-0
- By:
- Publication type:
- Article
Ten Simple Rules for Reproducible Computational Research.
- Published in:
- 2013
- By:
- Publication type:
- Editorial
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab566
- By:
- Publication type:
- Article
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis.
- Published in:
- Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1523, doi. 10.1093/bib/bbz083
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- Publication type:
- Article
In the loop: promoter-enhancer interactions and bioinformatics.
- Published in:
- Briefings in Bioinformatics, 2016, v. 17, n. 6, p. 980, doi. 10.1093/bib/bbv097
- By:
- Publication type:
- Article
Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs.
- Published in:
- Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.639672
- By:
- Publication type:
- Article
KAGE: fast alignment-free graph-based genotyping of SNPs and short indels.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02771-2
- By:
- Publication type:
- Article
ANDA: an open-source tool for automated image analysis of in vitro neuronal cells.
- Published in:
- BMC Neuroscience, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12868-023-00826-z
- By:
- Publication type:
- Article
Ten simple rules for quick and dirty scientific programming.
- Published in:
- 2021
- By:
- Publication type:
- Editorial
Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88516-w
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- Publication type:
- Article
DNase hypersensitive sites and association with multiple sclerosis.
- Published in:
- Human Molecular Genetics, 2014, v. 23, n. 4, p. 942, doi. 10.1093/hmg/ddt489
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- Publication type:
- Article
Vitamin D receptor binding, chromatin states and association with multiple sclerosis.
- Published in:
- Human Molecular Genetics, 2012, v. 21, n. 16, p. 3575, doi. 10.1093/hmg/dds189
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- Publication type:
- Article
A map of direct TF–DNA interactions in the human genome.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7715, doi. 10.1093/nar/gkz582
- By:
- Publication type:
- Article
map of direct TF–DNA interactions in the human genome.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 4, p. e21, doi. 10.1093/nar/gky1210
- By:
- Publication type:
- Article
Genome build information is an essential part of genomic track files.
- Published in:
- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1312-1
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- Publication type:
- Article
A survey of motif discovery methods in an integrated framework.
- Published in:
- Biology Direct, 2006, v. 1, p. 11, doi. 10.1186/1745-6150-1-11
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- Publication type:
- Article
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2438-1
- By:
- Publication type:
- Article
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments.
- Published in:
- PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0208484
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- Publication type:
- Article
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-120
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- Publication type:
- Article
Colocalization analyses of genomic elements: approaches, recommendations and challenges.
- Published in:
- Bioinformatics, 2019, v. 35, n. 9, p. 1615, doi. 10.1093/bioinformatics/bty835
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- Publication type:
- Article
Galaxy Portal: interacting with the galaxy platform through mobile devices.
- Published in:
- Bioinformatics, 2016, v. 32, n. 11, p. 1743, doi. 10.1093/bioinformatics/btw042
- By:
- Publication type:
- Article
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.
- Published in:
- Bioinformatics, 2014, v. 30, n. 11, p. 1620, doi. 10.1093/bioinformatics/btu082
- By:
- Publication type:
- Article
Sequential Monte Carlo multiple testing.
- Published in:
- Bioinformatics, 2011, v. 27, n. 23, p. 3235, doi. 10.1093/bioinformatics/btr568
- By:
- Publication type:
- Article
Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy.
- Published in:
- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0190101
- By:
- Publication type:
- Article