Works by Sandve, Geir K.

Results: 19

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression.

Published in:

BMC Medical Genomics, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1755-8794-6-45

By:

Handel, Adam E.;
Sandve, Geir K.;
Disanto, Giulio;
Handunnetthi, Lahiru;
Giovannoni, Gavin;
Ramagopalan, Sreeram V.

Publication type:

Article

Corrigendum: Human somatic cell mutagenesis creates genetically tractable sarcomas.

Published in:

Nature Genetics, 2014, v. 46, n. 12, p. 1372, doi. 10.1038/ng1214-1372

By:

Molyneux, Sam D;
Waterhouse, Paul D;
Shelton, Dawne;
Shao, Yang W;
Watling, Christopher M;
Tang, Qing-Lian;
Harris, Isaac S;
Dickson, Brendan C;
Tharmapalan, Pirashaanthy;
Sandve, Geir K;
Zhang, Xiaoyang;
Bailey, Swneke D;
Berman, Hal;
Wunder, Jay S;
Iszvak, Zsuzsanna;
Lupien, Mathieu;
Mak, Tak W;
Khokha, Rama

Publication type:

Article

Human somatic cell mutagenesis creates genetically tractable sarcomas.

Published in:

Nature Genetics, 2014, v. 46, n. 9, p. 964, doi. 10.1038/ng.3065

By:

Molyneux, Sam D;
Waterhouse, Paul D;
Shelton, Dawne;
Shao, Yang W;
Watling, Christopher M;
Tang, Qing-Lian;
Harris, Isaac S;
Dickson, Brendan C;
Tharmapalan, Pirashaanthy;
Sandve, Geir K;
Zhang, Xiaoyang;
Bailey, Swneke D;
Berman, Hal;
Wunder, Jay S;
Iszvak, Zsuzsanna;
Lupien, Mathieu;
Mak, Tak W;
Khokha, Rama

Publication type:

Article

EBNA2 Binds to Genomic Intervals Associated with Multiple Sclerosis and Overlaps with Vitamin D Receptor Occupancy.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0119605

By:

Ricigliano, Vito A. G.;
Handel, Adam E.;
Sandve, Geir K.;
Annibali, Viviana;
Ristori, Giovanni;
Mechelli, Rosella;
Cader, M. Zameel;
Salvetti, Marco

Publication type:

Article

Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6685-y

By:

Grytten, Ivar;
Rand, Knut D.;
Nederbragt, Alexander J.;
Sandve, Geir K.

Publication type:

Article

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006731

By:

Grytten, Ivar;
Rand, Knut D.;
Nederbragt, Alexander J.;
Storvik, Geir O.;
Glad, Ingrid K.;
Sandve, Geir K.

Publication type:

Article

Assessing the feasibility of statistical inference using synthetic antibody-antigen datasets.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2024, v. 23, n. 1, p. 1, doi. 10.1515/sagmb-2023-0027

By:

Minotto, Thomas;
Robert, Philippe A.;
Haff, Ingrid Hobæk;
Sandve, Geir K.

Publication type:

Article

Coordinates and intervals in graph-based reference genomes.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1678-9

By:

Rand, Knut D.;
Grytten, Ivar;
Nederbragt, Alexander J.;
Storvik, Geir O.;
Glad, Ingrid K.;
Sandve, Geir K.

Publication type:

Article

Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease.

Published in:

2018

By:

Risnes, Louise F.;
Christophersen, Asbjørn;
Dahal-Koirala, Shiva;
Neumann, Ralf S.;
Sandve, Geir K.;
Sarna, Vikas K.;
Lundin, Knut E. A.;
Shuo-Wang Qiao;
Sollid, Ludvig M.;
Lundin, Knut Ea;
Qiao, Shuo-Wang

Publication type:

journal article

DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation.

Published in:

PLoS ONE, 2023, v. 18, n. 4, p. 1, doi. 10.1371/journal.pone.0284443

By:

Al Hajj, Ghadi S.;
Pensar, Johan;
Sandve, Geir K.

Publication type:

Article

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.

Published in:

Nucleic Acids Research, 2018, v. 46, n. W1, p. W186, doi. 10.1093/nar/gky474

By:

Simovski, Boris;
Kanduri, Chakravarthi;
Gundersen, Sveinung;
Titov, Dmytro;
Domanska, Diana;
Bock, Christoph;
Bossini-Castillo, Lara;
Chikina, Maria;
Favorov, Alexander;
Layer, Ryan M.;
Mironov, Andrey A.;
Quinlan, Aaron R.;
Sheffield, Nathan C.;
Trynka, Gosia;
Sandve, Geir K.

Publication type:

Article

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease.

Published in:

BMC Medicine, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1741-7015-11-163

By:

Handel, Adam E.;
Sandve, Geir K.;
Disanto, Giulio;
Berlanga-Taylor, Antonio J.;
Gallone, Giuseppe;
Hanwell, Heather;
Drabløs, Finn;
Giovannoni, Gavin;
Ebers, George C.;
Ramagopalan, Sreeram V.

Publication type:

Article

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease.

Published in:

2013

By:

Handel, Adam E;
Sandve, Geir K;
Disanto, Giulio;
Berlanga-Taylor, Antonio J;
Gallone, Giuseppe;
Hanwell, Heather;
Drabløs, Finn;
Giovannoni, Gavin;
Ebers, George C;
Ramagopalan, Sreeram V

Publication type:

journal article

Identification of Transcripts with Shared Roles in the Pathogenesis of Postmenopausal Osteoporosis and Cardiovascular Disease.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 10, p. 5554, doi. 10.3390/ijms25105554

By:

Reppe, Sjur;
Gundersen, Sveinung;
Sandve, Geir K.;
Wang, Yunpeng;
Andreassen, Ole A.;
Medina-Gomez, Carolina;
Rivadeneira, Fernando;
Utheim, Tor P.;
Hovig, Eivind;
Gautvik, Kaare M.

Publication type:

Article

Assessment of composite motif discovery methods.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-123

By:

Klepper, Kjetil;
Sandve, Geir K.;
Abul, Osman;
Johansen, Jostein;
Drablos, Finn

Publication type:

Article

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3594, doi. 10.1093/bioinformatics/btaa158

By:

Weber, Cédric R;
Akbar, Rahmad;
Yermanos, Alexander;
Pavlović, Milena;
Snapkov, Igor;
Sandve, Geir K;
Reddy, Sai T;
Greiff, Victor

Publication type:

Article

simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods.

Published in:

GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad074

By:

Kanduri, Chakravarthi;
Scheffer, Lonneke;
Pavlović, Milena;
Rand, Knut Dagestad;
Chernigovskaya, Maria;
Pirvandy, Oz;
Yaari, Gur;
Greiff, Victor;
Sandve, Geir K

Publication type:

Article

Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac046

By:

Kanduri, Chakravarthi;
Pavlović, Milena;
Scheffer, Lonneke;
Motwani, Keshav;
Chernigovskaya, Maria;
Greiff, Victor;
Sandve, Geir K

Publication type:

Article

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Published in:

Nucleic Acids Research, 2013, v. 41, p. W133, doi. 10.1093/nar/gkt342

By:

Sandve, Geir K.;
Gundersen, Sveinung;
Johansen, Morten;
Glad, Ingrid K.;
Gunathasan, Krishanthi;
Holden, Lars;
Holden, Marit;
Liestøl, Knut;
Nygård, Ståle;
Nygaard, Vegard;
Paulsen, Jonas;
Rydbeck, Halfdan;
Trengereid, Kai;
Clancy, Trevor;
Drabløs, Finn;
Ferkingstad, Egil;
Kalaš, Matúš;
Lien, Tonje;
Rye, Morten B.;
Frigessi, Arnoldo

Publication type:

Article