Works by Salojärvi, Jarkko

Results: 40

Gene regulatory network analysis of silver birch reveals the ancestral state of secondary cell wall biosynthesis in core eudicots.

Published in:

New Phytologist, 2025, v. 246, n. 5, p. 2059, doi. 10.1111/nph.70126

By:

Ilievska, Maja;
Chong, Sun‐Li;
Lim, Kean‐Jin;
Immanen, Juha;
Nieminen, Kaisa;
Maaheimo, Hannu;
Helariutta, Yrjö;
Wurman‐Rodrich, Joel;
Dupree, Paul;
Ord, James;
Tenkanen, Maija;
Salojärvi, Jarkko

Publication type:

Article

Differences in growth and gas exchange between southern and northern provenances of silver birch (Betula pendula Roth) in northern Europe.

Published in:

Tree Physiology, 2020, v. 40, n. 2, p. 198, doi. 10.1093/treephys/tpz124

By:

Tenkanen, Antti;
Keski-Saari, Sarita;
Salojärvi, Jarkko;
Oksanen, Elina;
Keinänen, Markku;
Kontunen-Soppela, Sari

Publication type:

Article

Allopolyploid origin and diversification of the Hawaiian endemic mints.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47247-y

By:

Tomlin, Crystal M.;
Rajaraman, Sitaram;
Sebesta, Jeanne Theresa;
Scheen, Anne-Cathrine;
Bendiksby, Mika;
Low, Yee Wen;
Salojärvi, Jarkko;
Michael, Todd P.;
Albert, Victor A.;
Lindqvist, Charlotte

Publication type:

Article

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease.

Published in:

2013

By:

Jing Cheng;
Kalliomäki, Marko;
Heilig4, Hans G. H. J;
Airi Palva;
Lähteenoja, Hannu;
de Vos, Willem M.;
Salojärvi, Jarkko;
Satokari, Reetta;
Cheng, Jing;
Heilig, Hans G H J;
Palva, Airi

Publication type:

journal article

Mechanistic insights into the evolution of DUF26-containing proteins in land plants.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0306-9

By:

Vaattovaara, Aleksia;
Brandt, Benjamin;
Rajaraman, Sitaram;
Safronov, Omid;
Veidenberg, Andres;
Luklová, Markéta;
Kangasjärvi, Jaakko;
Löytynoja, Ari;
Hothorn, Michael;
Salojärvi, Jarkko;
Wrzaczek, Michael

Publication type:

Article

Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.675760

By:

Safdari, Pezhman;
Höckerstedt, Layla;
Brosche, Mikael;
Salojärvi, Jarkko;
Laine, Anna-Liisa

Publication type:

Article

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2265-y

By:

Ritari, Jarmo;
Salojärvi, Jarkko;
Lahti, Leo;
de Vos, Willem M.

Publication type:

Article

Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06660-1

By:

Wang, Cui;
Liu, Lele;
Yin, Meiqi;
Liu, Bingbing;
Wu, Yiming;
Eller, Franziska;
Gao, Yingqi;
Brix, Hans;
Wang, Tong;
Guo, Weihua;
Salojärvi, Jarkko

Publication type:

Article

Receptor-like Pseudokinase GHR1 Is Required for Stomatal Closure.

Published in:

Plant Cell, 2018, v. 30, n. 11, p. 2813, doi. 10.1105/tpc.18.00441

By:

Sierla, Maija;
Hõrak, Hanna;
Overmyer, Kirk;
Waszczak, Cezary;
Yarmolinsky, Dmitry;
Maierhofer, Tobias;
Vainonen, Julia P.;
Salojärvi, Jarkko;
Denessiouk, Konstantin;
Laanemets, Kristiina;
Tõldsepp, Kadri;
Vahisalu, Triin;
Gauthier, Adrien;
Puukko, Tuomas;
Paulin, Lars;
Auvinen, Petri;
Geiger, Dietmar;
Hedrich, Rainer;
Kollist, Hannes;
Kangasjärvi, Jaakko

Publication type:

Article

Dominant Mutation in the HT1 Kinase Uncovers Roles of MAP Kinases and GHR1 in CO2-Induced Stomatal Closure.

Published in:

Plant Cell, 2016, v. 28, n. 10, p. 2493, doi. 10.1105/tpc.16.00131

By:

Hõrak, Hanna;
Sierla, Maija;
Tõldsepp, Kadri;
Wang, Cun;
Wang, Yuh-Shuh;
Nuhkat, Maris;
Valk, Ervin;
Pechter, Priit;
Merilo, Ebe;
Salojärvi, Jarkko;
Overmyer, Kirk;
Loog, Mart;
Brosché, Mikael;
Schroeder, Julian I.;
Kangasjärvi, Jaakko;
Kollist, Hannes

Publication type:

Article

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0153294

By:

Kolmeder, Carolin A.;
Salojärvi, Jarkko;
Ritari, Jarmo;
de Been, Mark;
Raes, Jeroen;
Falony, Gwen;
Vieira-Silva, Sara;
Kekkonen, Riina A.;
Corthals, Garry L.;
Palva, Airi;
Salonen, Anne;
de Vos, Willem M.

Publication type:

Article

PLETHORA gradient formation mechanism separates auxin responses.

Published in:

Nature, 2014, v. 515, n. 7525, p. 125, doi. 10.1038/nature13663

By:

Mähönen, Ari Pekka;
Tusscher, Kirsten ten;
Siligato, Riccardo;
Smetana, Ondřej;
Díaz-Triviño, Sara;
Heidstra, Renze;
Scheres, Ben;
Salojärvi, Jarkko;
Wachsman, Guy;
Prasad, Kalika

Publication type:

Article

Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm).

Published in:

PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0177883

By:

Safronov, Omid;
Kreuzwieser, Jürgen;
Haberer, Georg;
Alyousif, Mohamed S.;
Schulze, Waltraud;
Al-Harbi, Naif;
Arab, Leila;
Ache, Peter;
Stempfl, Thomas;
Kruse, Joerg;
Mayer, Klaus X.;
Hedrich, Rainer;
Rennenberg, Heinz;
Salojärvi, Jarkko;
Kangasjärvi, Jaakko

Publication type:

Article

Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles.

Published in:

Systematic Biology, 2024, v. 73, n. 2, p. 392, doi. 10.1093/sysbio/syae012

By:

Leal, J Luis;
Milesi, Pascal;
Hodková, Eva;
Zhou, Qiujie;
James, Jennifer;
Eklund, D Magnus;
Pyhäjärvi, Tanja;
Salojärvi, Jarkko;
Lascoux, Martin

Publication type:

Article

Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences.

Published in:

Systematic Biology, 2023, v. 72, n. 2, p. 372, doi. 10.1093/sysbio/syad009

By:

Leal, J Luis;
Milesi, Pascal;
Salojärvi, Jarkko;
Lascoux, Martin

Publication type:

Article

Targeted retrieval of gene expression measurements using regulatory models.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2349, doi. 10.1093/bioinformatics/bts361

By:

Georgii, Elisabeth;
Salojärvi, Jarkko;
Brosché, Mikael;
Kangasjärvi, Jaakko;
Kaski, Samuel

Publication type:

Article

Colonic Mucosal Microbiota and Association of Bacterial Taxa with the Expression of Host Antimicrobial Peptides in Pediatric Ulcerative Colitis.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 17, p. 6044, doi. 10.3390/ijms21176044

By:

Jalanka, Jonna;
Cheng, Jing;
Hiippala, Kaisa;
Ritari, Jarmo;
Salojärvi, Jarkko;
Ruuska, Tarja;
Kalliomäki, Marko;
Satokari, Reetta

Publication type:

Article

Navigating through metaproteomics data: A logbook of database searching.

Published in:

Proteomics, 2015, v. 15, n. 20, p. 3439, doi. 10.1002/pmic.201400560

By:

Muth, Thilo;
Kolmeder, Carolin A.;
Salojärvi, Jarkko;
Keskitalo, Salla;
Varjosalo, Markku;
Verdam, Froukje J.;
Rensen, Sander S.;
Reichl, Udo;
Vos, Willem M.;
Rapp, Erdmann;
Martens, Lennart

Publication type:

Article

Author Correction: Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-30169-3

By:

Holden, Lindsay A.;
Arumilli, Meharji;
Hytönen, Marjo K.;
Hundi, Sruthi;
Salojärvi, Jarkko;
Brown, Kim H.;
Lohi, Hannes

Publication type:

Article

Tipping elements in the human intestinal ecosystem.

Published in:

Nature Communications, 2014, v. 5, n. 7, p. 4344, doi. 10.1038/ncomms5344

By:

Lahti, Leo;
Salojärvi, Jarkko;
Salonen, Anne;
Scheffer, Marten;
de Vos, Willem M.

Publication type:

Article

High-throughput sequencing data and the impact of plant gene annotation quality.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 4, p. 1069, doi. 10.1093/jxb/ery434

By:

Vaattovaara, Aleksia;
Leppälä, Johanna;
Salojärvi, Jarkko;
Wrzaczek, Michael

Publication type:

Article

PROTEIN PHOSPHATASE 2A-B′γ Controls Botrytis cinerea Resistance and Developmental Leaf Senescence.

Published in:

Plant Physiology, 2020, v. 182, n. 2, p. 1161, doi. 10.1104/pp.19.00893

By:

Durian, Guido;
Jeschke, Verena;
Rahikainen, Moona;
Vuorinen, Katariina;
Gollan, Peter J.;
Brosché, Mikael;
Salojärvi, Jarkko;
Glawischnig, Erich;
Winter, Zsófia;
Shengchun Li;
Noctor, Graham;
Aro, Eva-Mari;
Kangasjärvi, Jaakko;
Overmyer, Kirk;
Burow, Meike;
Kangasjärvi, Saijaliisa

Publication type:

Article

Intestinal Microbiota in Healthy U.S. Young Children and Adults—A High Throughput Microarray Analysis

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0064315

By:

Ringel-Kulka, Tamar;
Cheng, Jing;
Ringel, Yehuda;
Salojärvi, Jarkko;
Carroll, Ian;
Palva, Airi;
de Vos, Willem M.;
Satokari, Reetta

Publication type:

Article

Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029913

By:

Kolmeder, Carolin A.;
de Been, Mark;
Nikkilä, Janne;
Ritamo, Ilja;
Mättö, Jaana;
Valmu, Leena;
Salojärvi, Jarkko;
Palva, Airi;
Salonen, Anne;
de Vos, Willem M.

Publication type:

Article

Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress.

Published in:

PLoS Genetics, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.pgen.1005373

By:

Bourdais, Gildas;
Burdiak, Paweł;
Gauthier, Adrien;
Nitsch, Lisette;
Salojärvi, Jarkko;
Rayapuram, Channabasavangowda;
Idänheimo, Niina;
Hunter, Kerri;
Kimura, Sachie;
Merilo, Ebe;
Vaattovaara, Aleksia;
Oracz, Krystyna;
Kaufholdt, David;
Pallon, Andres;
Anggoro, Damar Tri;
Glów, Dawid;
Lowe, Jennifer;
Zhou, Ji;
Mohammadi, Omid;
Puukko, Tuomas

Publication type:

Article

Transcriptomics and Functional Genomics of ROS-Induced Cell Death Regulation by <i>RADICAL-INDUCED CELL DEATH1</i>.

Published in:

PLoS Genetics, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pgen.1004112

By:

Brosché, Mikael;
Blomster, Tiina;
Salojärvi, Jarkko;
Cui, Fuqiang;
Sipari, Nina;
Leppälä, Johanna;
Lamminmäki, Airi;
Tomai, Gloria;
Narayanasamy, Shaman;
Reddy, Ramesha A.;
Keinänen, Markku;
Overmyer, Kirk;
Kangasjärvi, Jaakko

Publication type:

Article

Integration of photosynthesis, development and stress as an opportunity for plant biology.

Published in:

New Phytologist, 2015, v. 208, n. 3, p. 647, doi. 10.1111/nph.13549

By:

Allahverdiyeva, Yagut;
Battchikova, Natalia;
Brosché, Mikael;
Fujii, Hiroaki;
Kangasjärvi, Saijaliisa;
Mulo, Paula;
Mähönen, Ari Pekka;
Nieminen, Kaisa;
Overmyer, Kirk;
Salojärvi, Jarkko;
Wrzaczek, Michael

Publication type:

Article

Genetic Diversity Analysis of Sapindus in China and Extraction of a Core Germplasm Collection Using EST-SSR Markers.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.857993

By:

Liu, Jiming;
Gao, Shilun;
Xu, Yuanyuan;
Wang, Mianzhi;
Ngiam, Jia Jun;
Rui Wen, Nicholas Cho;
Yi, Joan Jong Jing;
Weng, Xuehuang;
Jia, Liming;
Salojärvi, Jarkko

Publication type:

Article

Ozone-triggered rapid stomatal response involves the production of reactive oxygen species, and is controlled by SLAC1 and OST1.

Published in:

Plant Journal, 2010, v. 62, n. 3, p. 442, doi. 10.1111/j.1365-313X.2010.04159.x

By:

Vahisalu, Triin;
Puzõrjova, Irina;
Brosché, Mikael;
Valk, Ervin;
Lepiku, Martin;
Moldau, Heino;
Pechter, Priit;
Wang, Yuh-Shuh;
Lindgren, Ove;
Salojärvi, Jarkko;
Loog, Mart;
Kangasjärvi, Jaakko;
Kollist, Hannes

Publication type:

Article

Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.

Published in:

Plant Journal, 2009, v. 60, n. 2, p. 268, doi. 10.1111/j.1365-313X.2009.03951.x

By:

Jaspers, Pinja;
Blomster, Tiina;
Brosché, Mikael;
Salojärvi, Jarkko;
Ahlfors, Reetta;
Vainonen, Julia P.;
Reddy, Ramesha A.;
Immink, Richard;
Angenent, Gerco;
Turck, Franziska;
Overmyer, Kirk;
Kangasjärvi, Jaakko

Publication type:

Article

The RST and PARP-like domain containing SROprotein family: analysis of protein structure,function and conservation in land plants.

Published in:

BMC Genomics, 2010, v. 11, p. 170, doi. 10.1186/1471-2164-11-170

By:

Jaspers, Pinja;
Overmyer, Kirk;
Wrzaczek, Michael;
Vainonen, Julia P.;
Blomster, Tiina;
Salojärvi, Jarkko;
Reddy, Ramesha A.;
Kangasjärvi, Jaakko

Publication type:

Article

Photosystem II Repair and Plant Immunity: Lessons Learned from Arabidopsis Mutant Lacking the THYLAKOID LUMEN PROTEIN 18.3.

Published in:

Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00405

By:

Järvi, Sari;
Isojärvi, Janne;
Kangasjärvi, Saijaliisa;
Suorsa, Marjaana;
Aro, Eva-Mari;
Salojärvi, Jarkko;
Mamedov, Fikret

Publication type:

Article

The photoreceptor UVR8 mediates the perception of both UV‐B and UV‐A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes.

Published in:

Plant, Cell & Environment, 2020, v. 43, n. 6, p. 1513, doi. 10.1111/pce.13752

By:

Rai, Neha;
O'Hara, Andrew;
Farkas, Daniel;
Safronov, Omid;
Ratanasopa, Khuanpiroon;
Wang, Fang;
Lindfors, Anders V.;
Jenkins, Gareth I.;
Lehto, Tarja;
Salojärvi, Jarkko;
Brosché, Mikael;
Strid, Åke;
Aphalo, Pedro J.;
Morales, Luis O.

Publication type:

Article

Arabidopsis MLO2 is a negative regulator of sensitivity to extracellular reactive oxygen species.

Published in:

Plant, Cell & Environment, 2018, v. 41, n. 4, p. 782, doi. 10.1111/pce.13144

By:

Cui, Fuqiang;
Wu, Hongpo;
Safronov, Omid;
Zhang, Panpan;
Kumar, Rajeev;
Kollist, Hannes;
Salojärvi, Jarkko;
Panstruga, Ralph;
Overmyer, Kirk

Publication type:

Article

Subunits B′ γ and B′ ζ of protein phosphatase 2A regulate photo-oxidative stress responses and growth in A rabidopsis thaliana.

Published in:

Plant, Cell & Environment, 2015, v. 38, n. 12, p. 2641, doi. 10.1111/pce.12575

By:

Konert, Grzegorz;
Rahikainen, Moona;
Trotta, Andrea;
Durian, Guido;
Salojärvi, Jarkko;
Khorobrykh, Sergey;
Tyystjärvi, Esa;
Kangasjärvi, Saijaliisa

Publication type:

Article

Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 8, p. 1877, doi. 10.1038/ismej.2017.44

By:

Fuentes, Susana;
Rossen, Noortje G;
van der Spek, Mirjam J;
Hartman, Jorn HA;
Huuskonen, Laura;
Korpela, Katri;
Salojärvi, Jarkko;
Aalvink, Steven;
de Vos, Willem M;
D'Haens, Geert R;
Zoetendal, Erwin G;
Ponsioen, Cyriel Y

Publication type:

Article

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 4, p. 1002, doi. 10.1038/ismej.2015.177

By:

Cheng, Jing;
Ringel-Kulka, Tamar;
Heikamp-de Jong, Ineke;
Ringel, Yehuda;
Carroll, Ian;
de Vos, Willem M;
Salojärvi, Jarkko;
Satokari, Reetta

Publication type:

Article

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 11, p. 2218, doi. 10.1038/ismej.2014.63

By:

Salonen, Anne;
Lahti, Leo;
Salojärvi, Jarkko;
Holtrop, Grietje;
Korpela, Katri;
Duncan, Sylvia H;
Date, Priya;
Farquharson, Freda;
Johnstone, Alexandra M;
Lobley, Gerald E;
Louis, Petra;
Flint, Harry J;
de Vos, Willem M

Publication type:

Article

Genotype- and provenance-related variation in the leaf surface secondary metabolites of silver birch.

Published in:

Canadian Journal of Forest Research, 2018, v. 48, n. 5, p. 494, doi. 10.1139/cjfr-2017-0456

By:

Deepak, Maya;
Lihavainen, Jenna;
Keski-Saari, Sarita;
Kontunen-Soppela, Sari;
Salojärvi, Jarkko;
Tenkanen, Antti;
Heimonen, Kaisa;
Oksanen, Elina;
Keinänen, Markku

Publication type:

Article

Transcriptional regulation of the CRK/DUF26 groupof Receptor-like protein kinases by ozone and planthormones in Arabidopsis.

Published in:

BMC Plant Biology, 2010, v. 10, p. 95, doi. 10.1186/1471-2229-10-95

By:

Wrzaczek, Michael;
Brosché, Mikael;
Salojärvi, Jarkko;
Kangasjärvi, Saijaliisa;
Idänheimo, Niina;
Mersmann, Sophia;
Robatzek, Silke;
Karpiński, Stanislaw;
Karpińska, Barbara;
Kangasjärvi, Jaakko

Publication type:

Article