Works matching AU Salehi-Ashtiani, Kourosh

Results: 35

Differences in regulation of testis specific lactate dehydrogenase in rat and mouse occur at multiple levels.

Published in:

Molecular Reproduction & Development, 1993, v. 35, n. 1, p. 1, doi. 10.1002/mrd.1080350102

By:

Salehi-Ashtiani, Kourosh;
Goldberg, Erwin

Publication type:

Article

A near telomere-to-telomere phased reference assembly for the male mountain gorilla.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05114-5

By:

Nelson, David R.;
Muvunyi, Richard;
Hazzouri, Khaled M.;
Tumushime, Jean-Claude;
Nzayisenga, Gaspard;
Julius, Nziza;
Meert, Wim;
Karim, Latifa;
Coppieters, Wouter;
Munson, Katherine M.;
Yoo, DongAhn;
Eichler, Evan E.;
Salehi-Ashtiani, Kourosh;
Twizere, Jean-Claude

Publication type:

Article

A high-quality genome assembly and annotation of the gray mangrove, Avicennia marina.

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 1, p. 1, doi. 10.1093/g3journal/jkaa025

By:

Friis, Guillermo;
Vizueta, Joel;
Smith, Edward G.;
Nelson, David R.;
Khraiwesh, Basel;
Qudeimat, Enas;
Salehi-Ashtiani, Kourosh;
Ortega, Alejandra;
Marshell, Alyssa;
Duarte, Carlos M.;
Burt, John A.

Publication type:

Article

Ultrastructural Variability in the Locomotor Cortex of the Ciliated Protozoa, Mytilophilus pacificae.

Published in:

Journal of Eukaryotic Microbiology, 1997, v. 44, n. 5, p. 471, doi. 10.1111/j.1550-7408.1997.tb05726.x

By:

SALEHI-ASHTIANI, KOUROSH;
ANTIPA, GREGORY A.

Publication type:

Article

Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii.

Published in:

Plant Cell, 2015, v. 27, n. 9, p. 2353, doi. 10.1105/tpc.15.00492

By:

Flowers, Jonathan M.;
Hazzouri, Khaled M.;
Pham, Gina M.;
Rosas, Ulises;
Bahmani, Tayebeh;
Khraiwesh, Basel;
Nelson, David R.;
Jijakli, Kenan;
Abdrabu, Rasha;
Harris, Elizabeth H.;
Lefebvre, Paul A.;
Hom, Erik F.Y.;
Salehi-Ashtiani, Kourosh;
Purugganan, Michael D.

Publication type:

Article

Enhancing algal production strategies: strain selection, AI-informed cultivation, and mutagenesis.

Published in:

Frontiers in Sustainable Food Systems, 2024, p. 1, doi. 10.3389/fsufs.2024.1331251

By:

Alzahmi, Amnah Salem;
Daakour, Sarah;
Nelson, David;
Al-Khairy, Dina;
Twizere, Jean-Claude;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Safranal induces DNA double-strand breakage and ER-stress-mediated cell death in hepatocellular carcinoma cells.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34855-0

By:

Al-Hrout, Ala'a;
Chaiboonchoe, Amphun;
Khraiwesh, Basel;
Murali, Chandraprabha;
Baig, Badriya;
El-Awady, Raafat;
Tarazi, Hamadeh;
Alzahmi, Amnah;
Nelson, David R.;
Greish, Yaser E.;
Ramadan, Wafaa;
Salehi-Ashtiani, Kourosh;
Amin, Amr

Publication type:

Article

An integrative Raman microscopy-based workflow for rapid in situ analysis of microalgal lipid bodies.

Published in:

Biotechnology for Biofuels, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13068-015-0349-1

By:

Sharma, Sudhir Kumar;
Nelson, David R.;
Abdrabu, Rasha;
Khraiwesh, Basel;
Jijakli, Kenan;
Arnoux, Marc;
O'Connor, Matthew J.;
Bahmani, Tayebeh;
Cai, Hong;
Khapli, Sachin;
Jagannathan, Ramesh;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Molecular Mechanisms behind Safranal's Toxicity to HepG2 Cells from Dual Omics.

Published in:

Antioxidants, 2022, v. 11, n. 6, p. 1125, doi. 10.3390/antiox11061125

By:

Nelson, David Roy;
Hrout, Ala'a Al;
Alzahmi, Amnah Salem;
Chaiboonchoe, Amphun;
Amin, Amr;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Yeast one-hybrid assays for gene-centered human gene regulatory network mapping.

Published in:

Nature Methods, 2011, v. 8, n. 12, p. 1050, doi. 10.1038/nmeth.1764

By:

Reece-Hoyes, John S;
Barutcu, A Rasim;
McCord, Rachel Patton;
Jeong, Jun Seop;
Jiang, Lizhi;
MacWilliams, Andrew;
Yang, Xinping;
Salehi-Ashtiani, Kourosh;
Hill, David E;
Blackshaw, Seth;
Zhu, Heng;
Dekker, Job;
Walhout, Albertha J M

Publication type:

Article

A public genome-scale lentiviral expression library of human ORFs.

Published in:

Nature Methods, 2011, v. 8, n. 8, p. 659, doi. 10.1038/nmeth.1638

By:

Xiaoping Yang;
Boeh, Jesse S.;
Xinping Yang;
Kourosh Salehi-Ashtiani;
Tong Hao;
Yun Shen;
Rakela Lubonja;
Thomas, Sapana R.;
Ozan Alkan;
Tashfeen Bhimdi;
Green, Thomas M.;
Johannessen, Cory M.;
Silver, Serena J.;
Cindy Nguyen;
Murray, Ryan R.;
Hieronymus, Haley;
Balcha, Dawit;
Fan, Changyu;
Lin, Chenwei;
Ghamsari, Lila

Publication type:

Article

Next-generation sequencing to generate interactome datasets.

Published in:

Nature Methods, 2011, v. 8, n. 6, p. 478, doi. 10.1038/nmeth.1597

By:

Yu, Haiyuan;
Tardivo, Leah;
Tam, Stanley;
Weiner, Evan;
Gebreab, Fana;
Fan, Changyu;
Svrzikapa, Nenad;
Hirozane-Kishikawa, Tomoko;
Rietman, Edward;
Yang, Xinping;
Sahalie, Julie;
Salehi-Ashtiani, Kourosh;
Hao, Tong;
Cusick, Michael E;
Hill, David E;
Roth, Frederick P;
Braun, Pascal;
Vidal, Marc

Publication type:

Article

Metabolic network analysis integrated with transcript verification for sequenced genomes.

Published in:

Nature Methods, 2009, v. 6, n. 8, p. 589, doi. 10.1038/nmeth.1348

By:

Manichaikul, Ani;
Ghamsari, Lila;
Hom, Erik F. Y.;
Chenwei Lin;
Murray, Ryan R.;
Chang, Roger L.;
Balaji, S.;
Tong Hao;
Yun Shen;
Chavali, Arvind K.;
Thiele, Ines;
Xinping Yang;
Changyu Fan;
Mello, Elizabeth;
Hill, David E.;
Vidal, Marc;
Salehi-Ashtiani, Kourosh;
Papin, Jason A.

Publication type:

Article

Proteome expression moves in vitro: resources and tools for harnessing the human proteome.

Published in:

Nature Methods, 2008, v. 5, n. 12, p. 1001, doi. 10.1038/nmeth1208-1001

By:

Hartley, James L.;
Salehi-Ashtiani, Kourosh;
Hill, David E.

Publication type:

Article

Efficient targeted transcript discovery via array-based normalization of RACE libraries.

Published in:

Nature Methods, 2008, v. 5, n. 7, p. 629, doi. 10.1038/nmeth.1216

By:

Djebali, Sarah;
Kapranov, Philipp;
Foissac, Sylvain;
Lagarde, Julien;
Reymond, Alexandre;
Ucla, Catherine;
Wyss, Carine;
Drenkow, Jorg;
Dumais, Erica;
Murray, Ryan R.;
Lin, Chenwei;
Szeto, David;
Denoeud, France;
Calvo, Miquel;
Frankish, Adam;
Harrow, Jennifer;
Makrythanasis, Periklis;
Vidal, Marc;
Salehi-Ashtiani, Kourosh;
Antonarakis, Stylianos E.

Publication type:

Article

Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

Published in:

Nature Methods, 2008, v. 5, n. 7, p. 597, doi. 10.1038/nmeth.1224

By:

Salehi-Ashtiani, Kourosh;
Yang, Xinping;
Derti, Adnan;
Tian, Weidong;
Hao, Tong;
Lin, Chenwei;
Makowski, Kathryn;
Shen, Lei;
Murray, Ryan R.;
Szeto, David;
Tusneem, Nadeem;
Smith, Douglas R.;
Cusick, Michael E.;
Hill, David E.;
Roth, Frederick P.;
Vidal, Marc

Publication type:

Article

SH3 interactome conserves general function over specific form.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.9

By:

Xin, Xiaofeng;
Gfeller, David;
Cheng, Jackie;
Tonikian, Raffi;
Sun, Lin;
Guo, Ailan;
Lopez, Lianet;
Pavlenco, Alevtina;
Akintobi, Adenrele;
Zhang, Yingnan;
Rual, Jean‐François;
Currell, Bridget;
Seshagiri, Somasekar;
Hao, Tong;
Yang, Xinping;
Shen, Yun A;
Salehi‐Ashtiani, Kourosh;
Li, Jingjing;
Cheng, Aaron T;
Bouamalay, Dryden

Publication type:

Article

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.52

By:

Chang, Roger L;
Ghamsari, Lila;
Manichaikul, Ani;
Hom, Erik F Y;
Balaji, Santhanam;
Fu, Weiqi;
Shen, Yun;
Hao, Tong;
Palsson, Bernhard Ø;
Salehi‐Ashtiani, Kourosh;
Papin, Jason A

Publication type:

Article

In vitro evolution suggests multiple origins for the hammerhead ribozyme.

Published in:

Nature, 2001, v. 414, n. 6859, p. 82, doi. 10.1038/35102081

By:

Salehi-Ashtiani, Kourosh;
Szostak, Jack W.

Publication type:

Article

Integrated analysis of gene network in childhood leukemia from microarray and pathway databases.

Published in:

2014

By:

Chaiboonchoe, Amphun;
Samarasinghe, Sandhya;
Kulasiri, Don;
Salehi-Ashtiani, Kourosh

Publication type:

Journal Article

Computational Approaches for Microalgal Biofuel Optimization: A Review.

Published in:

BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/649453

By:

Koussa, Joseph;
Chaiboonchoe, Amphun;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Integrated Analysis of Gene Network in Childhood Leukemia from Microarray and Pathway Databases.

Published in:

BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/278748

By:

Chaiboonchoe, Amphun;
Samarasinghe, Sandhya;
Kulasiri, Don;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Metabolic systems analysis to advance algal biotechnology.

Published in:

Biotechnology Journal, 2010, v. 5, n. 7, p. 660, doi. 10.1002/biot.201000129

By:

Schmidt, Brian J.;
Lin-Schmidt, Xiefan;
Chamberlin, Austin;
Salehi-Ashtiani, Kourosh;
Papin, Jason A.

Publication type:

Article

Combined artificial high-silicate medium and LED illumination promote carotenoid accumulation in the marine diatom Phaeodactylum tricornutum.

Published in:

Microbial Cell Factories, 2019, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12934-019-1263-1

By:

Yi, Zhiqian;
Su, Yixi;
Cherek, Paulina;
Nelson, David R.;
Lin, Jianping;
Rolfsson, Ottar;
Wu, Hua;
Salehi-Ashtiani, Kourosh;
Brynjolfsson, Sigurdur;
Fu, Weiqi

Publication type:

Article

COT drives resistance to RAF inhibition through MAP kinase pathway reactivation.

Published in:

Nature, 2010, v. 468, n. 7326, p. 968, doi. 10.1038/nature09627

By:

Johannessen, Cory M.;
Boehm, Jesse S.;
Kim, So Young;
Thomas, Sapana R.;
Wardwell, Leslie;
Johnson, Laura A.;
Emery, Caroline M.;
Stransky, Nicolas;
Cogdill, Alexandria P.;
Barretina, Jordi;
Caponigro, Giordano;
Hieronymus, Haley;
Murray, Ryan R.;
Salehi-Ashtiani, Kourosh;
Hill, David E.;
Vidal, Marc;
Zhao, Jean J.;
Xiaoping Yang;
Alkan, Ozan;
Sungjoon Kim

Publication type:

Article

Adaptive Evolution Signatures in Prochlorococcus : Open Reading Frame (ORF)eome Resources and Insights from Comparative Genomics.

Published in:

Microorganisms, 2024, v. 12, n. 8, p. 1720, doi. 10.3390/microorganisms12081720

By:

Daakour, Sarah;
Nelson, David R.;
Fu, Weiqi;
Jaiswal, Ashish;
Dohai, Bushra;
Alzahmi, Amnah Salem;
Koussa, Joseph;
Huang, Xiaoluo;
Shen, Yue;
Twizere, Jean-Claude;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Alternative Poly(A) Tails Meet miRNA Targeting in Caenorhabditis elegans.

Published in:

Genetics, 2017, v. 206, n. 2, p. 755, doi. 10.1534/genetics.117.202101

By:

Khraiwesh, Basel;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Salt flat microbial diversity and dynamics across salinity gradient.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-15347-8

By:

Hazzouri, Khaled M.;
Sudalaimuthuasari, Naganeeswaran;
Saeed, Esam Eldin;
Kundu, Biduth;
Al-Maskari, Raja Saeed;
Nelson, David;
AlShehhi, Alya Ali;
Aldhuhoori, Maryam Abdulla;
Almutawa, Dhabiah Saleh;
Alshehhi, Fatema Rashed;
Balan, Jithin;
Mundra, Sunil;
Alam, Mohammad;
Salehi-Ashtiani, Kourosh;
Purugganan, Michael;
Amiri, Khaled M. A.

Publication type:

Article

Mapping of HKT1;5 Gene in Barley Using GWAS Approach and Its Implication in Salt Tolerance Mechanism.

Published in:

Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2018.00156

By:

Hazzouri, Khaled M.;
Khraiwesh, Basel;
Amiri, Khaled M. A.;
Pauli, Duke;
Blake, Tom;
Shahid, Mohammad;
Mullath, Sangeeta K.;
Nelson, David;
Mansour, Alain L.;
Salehi-Ashtiani, Kourosh;
Purugganan, Michael;
Masmoudi, Khaled

Publication type:

Article

Chemical Mutagenesis and Fluorescence-Based High-Throughput Screening for Enhanced Accumulation of Carotenoids in a Model Marine Diatom Phaeodactylum tricornutum.

Published in:

Marine Drugs, 2018, v. 16, n. 8, p. 272, doi. 10.3390/md16080272

By:

Su, Yixi;
Bergmann, Andreas;
Rolfsson, Ottar;
Brynjolfsson, Sigurdur;
Yi, Zhiqian;
Fu, Weiqi;
Ingthorsson, Saevar;
Xu, Maonian;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Algal Cell Factories: Approaches, Applications, and Potentials.

Published in:

Marine Drugs, 2016, v. 14, n. 12, p. 225, doi. 10.3390/md14120225

By:

Weiqi Fu;
Chaiboonchoe, Amphun;
Khraiwesh, Basel;
Nelson, David R.;
Al-Khairy, Dina;
Mystikou, Alexandra;
Alzahmi, Amnah;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Closing the Gap between Bio-Based and Petroleum-Based Plastic through Bioengineering.

Published in:

Microorganisms, 2022, v. 10, n. 12, p. 2320, doi. 10.3390/microorganisms10122320

By:

Al-Khairy, Dina;
Fu, Weiqi;
Alzahmi, Amnah Salem;
Twizere, Jean-Claude;
Amin, Shady A.;
Salehi-Ashtiani, Kourosh;
Mystikou, Alexandra

Publication type:

Article

Tissue-Specific Transcriptomes Outline Halophyte Adaptive Strategies in the Gray Mangrove (Avicennia marina).

Published in:

Agronomy, 2022, v. 12, n. 9, p. 2030, doi. 10.3390/agronomy12092030

By:

Nelson, David R.;
Chaiboonchoe, Amphun;
Hazzouri, Khaled M.;
Khraiwesh, Basel;
Alzahmi, Amnah;
Jaiswal, Ashish;
Friis, Guillermo;
Burt, John A.;
Amiri, Khaled M. A.;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Genome-wide expression analysis offers new insights into the origin and evolution of Physcomitrella patens stress response.

Published in:

Scientific Reports, 2015, v. 5, n. 1, p. 17434, doi. 10.1038/srep17434

By:

Khraiwesh, Basel;
Qudeimat, Enas;
Thimma, Manjula;
Chaiboonchoe, Amphun;
Jijakli, Kenan;
Alzahmi, Amnah;
Arnoux, Marc;
Salehi-Ashtiani, Kourosh

Publication type:

Article

Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii.

Published in:

BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-S1-S4

By:

Ghamsari, Lila;
Balaji, Santhanam;
Yun Shen;
Xinping Yang;
Balcha, Dawit;
Changyu Fan;
Tong Hao;
Haiyuan Yu;
Papin, Jason A.;
Salehi-Ashtiani, Kourosh

Publication type:

Article