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PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-27664-7
By:
- Arendt, Maja Louise;
- Sakthikumar, Sharadha;
- Melin, Malin;
- Elvers, Ingegerd;
- Rivera, Patricio;
- Larsen, Majbritt;
- Saellström, Sara;
- Lingaas, Frode;
- Rönnberg, Henrik;
- Lindblad-Toh, Kerstin
Publication type:
Article
Novel genomic prognostic biomarkers for dogs with cancer.
Published in:
Journal of Veterinary Internal Medicine, 2023, v. 37, n. 6, p. 2410, doi. 10.1111/jvim.16893
By:
- Chon, Esther;
- Sakthikumar, Sharadha;
- Tang, Min;
- Hamilton, Matthew J.;
- Vaughan, Andrew;
- Smith, Ashley;
- Sommer, Breann;
- Robat, Cecilia;
- Manley, Christina;
- Mullin, Christine;
- Ohashi, Emi;
- Manor, Emily;
- Custis, James;
- Intile, Joanne;
- Shiu, Kai Biu;
- Parshley, Lisa;
- Bergman, Noelle;
- Sheppard‐Olivares, Sabina;
- Hafeman, Scott;
- Wright, Zachary
Publication type:
Article
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement.
Published in:
PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112963
By:
- Walker, Bruce J.;
- Abeel, Thomas;
- Shea, Terrance;
- Priest, Margaret;
- Abouelliel, Amr;
- Sakthikumar, Sharadha;
- Cuomo, Christina A.;
- Zeng, Qiandong;
- Wortman, Jennifer;
- Young, Sarah K.;
- Earl, Ashlee M.
Publication type:
Article
Evolution of pathogenicity and sexual reproduction in eight Candida genomes.
Published in:
Nature, 2009, v. 459, n. 7247, p. 657, doi. 10.1038/nature08064
By:
- Butler, Geraldine;
- Rasmussen, Matthew D.;
- Lin, Michael F.;
- Santos, Manuel A. S.;
- Sakthikumar, Sharadha;
- Munro, Carol A.;
- Rheinbay, Esther;
- Grabherr, Manfred;
- Forche, Anja;
- Reedy, Jennifer L.;
- Agrafioti, Ino;
- Arnaud, Martha B.;
- Bates, Steven;
- Brown, Alistair J. P.;
- Brunke, Sascha;
- Costanzo, Maria C.;
- Fitzpatrick, David A.;
- De Groot, Piet W. J.;
- Harris, David;
- Hoyer, Lois L.
Publication type:
Article
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
Published in:
G3: Genes | Genomes | Genetics, 2017, v. 7, n. 2, p. 361, doi. 10.1534/g3.116.032797
By:
- Cuomo, Christina A.;
- Bakkeren, Guus;
- Khalil, Hala Badr;
- Panwar, Vinay;
- Joly, David;
- Linning, Rob;
- Sakthikumar, Sharadha;
- Xiao Song;
- Adiconis, Xian;
- Fan, Lin;
- Goldberg, Jonathan M.;
- Levin, Joshua Z.;
- Young, Sarah;
- Qiandong Zeng;
- Anikster, Yehoshua;
- Bruce, Myron;
- Meinan Wang;
- Chuntao Yin;
- Mccallum, Brent;
- Szabo, Les J.
Publication type:
Article
Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia.
Published in:
Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00148
By:
- Jing Qin Wu;
- Sakthikumar, Sharadha;
- Chongmei Dong;
- Peng Zhang;
- Cuomo, Christina A.;
- Park, Robert F.
Publication type:
Article
Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level.
Published in:
Genetics, 2017, v. 207, n. 1, p. 327, doi. 10.1534/genetics.117.203836
By:
- Rhodes, Johanna;
- Desjardins, Christopher A.;
- Sykes, Sean M.;
- Beale, Mathew A.;
- Vanhove, Mathieu;
- Sakthikumar, Sharadha;
- Yuan Chen;
- Gujja, Sharvari;
- Saif, Sakina;
- Chowdhary, Anuradha;
- Lawson, Daniel John;
- Ponzio, Vinicius;
- Colombo, Arnaldo Lopes;
- Meyer, Wieland;
- Engelthaler, David M.;
- Hagen, Ferry;
- Illnait-Zaragozi, Maria Teresa;
- Alanio, Alexandre;
- Vreulink, Jo-Marie;
- Heitman, Joseph
Publication type:
Article
Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02035-x
By:
- Sakthikumar, Sharadha;
- Roy, Ananya;
- Haseeb, Lulu;
- Pettersson, Mats E.;
- Sundström, Elisabeth;
- Marinescu, Voichita D.;
- Lindblad-Toh, Kerstin;
- Forsberg-Nilsson, Karin
Publication type:
Article
Genomic analysis across 53 canine cancer types reveals novel mutations and high clinical actionability potential.
Published in:
Veterinary & Comparative Oncology, 2024, v. 22, n. 1, p. 30, doi. 10.1111/vco.12944
By:
- Sakthikumar, Sharadha;
- Warrier, Manisha;
- Whitley, Derick;
- Facista, Salvatore;
- Adkins, Jonathan;
- Aman, Sara;
- Tsinajinnie, Darwin;
- Duran, Natalie;
- Siravegna, Giulia;
- Ahmed, Zeeshan;
- Day, Kenneth;
- Jenkins, Brooklyn;
- Patel, Nidhi;
- Ryden, Kirk;
- Nadai, Joe;
- Banovich, Kathryn;
- Powers, Barbara;
- Edwards, Jeffrey;
- Steinberg, Jennifer;
- Fielder, Susan
Publication type:
Article
Standing in the canine precision medicine knowledge gap: Improving annotation of canine cancer genomic biomarkers through systematic comparative analysis of human cancer mutations in COSMIC.
Published in:
Veterinary & Comparative Oncology, 2023, v. 21, n. 3, p. 482, doi. 10.1111/vco.12911
By:
- Sakthikumar, Sharadha;
- Facista, Salvatore;
- Whitley, Derick;
- Byron, Sara A.;
- Ahmed, Zeeshan;
- Warrier, Manisha;
- Zhu, Zhanyang;
- Chon, Esther;
- Banovich, Kathryn;
- Haworth, David;
- Hendricks, William P. D.;
- Wang, Guannan
Publication type:
Article

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