Works by Sakamoto, Taiichi

Results: 34

NMR study of aptamers.

Published in:

Aptamers, 2017, v. 1, p. 13

By:

Taiichi Sakamoto

Publication type:

Article

Conformational plasticity of RNA for target recognition as revealed by the 2.15 Å crystal structure of a human IgG–aptamer complex.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 21, p. 7822, doi. 10.1093/nar/gkq615

By:

Nomura, Yusuke;
Sugiyama, Shigeru;
Sakamoto, Taiichi;
Miyakawa, Shin;
Adachi, Hiroaki;
Takano, Kazufumi;
Murakami, Satoshi;
Inoue, Tsuyoshi;
Mori, Yusuke;
Nakamura, Yoshikazu;
Matsumura, Hiroyoshi

Publication type:

Article

Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 18, p. 5184, doi. 10.1093/nar/gkl664

By:

Nomura, Yusuke;
Kajikawa, Masaki;
Baba, Seiki;
Nakazato, Shinta;
Imai, Takayuki;
Sakamoto, Taiichi;
Okada, Norihiro;
Kawai, Gota

Publication type:

Article

NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 745, doi. 10.1093/nar/gki222

By:

Sakamoto, Taiichi;
Oguro, Akihiro;
Kawai, Gota;
Ohtsu, Takashi;
Nakamura, Yoshikazu

Publication type:

Article

Imino proton NMR analysis of HDV ribozymes: nested double pseudoknot structure and Mg2+ ion-binding site close to the catalytic core in solution.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 3, p. 766, doi. 10.1093/nar/30.3.766

By:

Tanaka, Yoichiro;
Hori, Tamaki;
Tagaya, Mitsuhiro;
Sakamoto, Taiichi;
Kurihara, Yasuyuki;
Katahira, Masato;
Uesugi, Seiichi

Publication type:

Article

Mammalian Bcnt/Cfdp1, a potential epigenetic factor characterized by an acidic stretch in the disordered N-terminal and Ser250 phosphorylation in the conserved C-terminal regions.

Published in:

Bioscience Reports, 2015, v. 35, n. 4, p. 1, doi. 10.1042/BSR20150111

By:

Shintaro Iwashita;
Takehiro Suzuki;
Takeshi Yasuda;
Kentaro Nakashima;
Taiichi Sakamoto;
Toshiyuki Kohno;
Ichiro Takahashi;
Takayasu Kobayashi;
Yoshiko Ohno-Iwashita;
Shinobu Imajoh-Ohmi;
Si-Young Song;
Naoshi Dohmae

Publication type:

Article

Solution Structure of a SRP19 Binding Domain in Human SRP RNA1.

Published in:

Journal of Biochemistry, 2002, v. 132, n. 2, p. 177, doi. 10.1093/oxfordjournals.jbchem.a003207

By:

Sakamoto, Taiichi;
Morita, Satoshi;
Tabata, Kazutoshi;
Nakamura, Kouji;
Kawai, Gota

Publication type:

Article

Hairpin Structure of an RNA 28-mer, Which Contains a Sequence of the Enzyme Component of a Hammerhead Ribozyme System: Evidence for Tandem G: A Pairs That Are Not of Side-by-Side Type1.

Published in:

Journal of Biochemistry, 1997, v. 122, n. 3, p. 556, doi. 10.1093/oxfordjournals.jbchem.a021789

By:

Sakamoto, Taiichi;
Kawai, Gota;
Katahira, Masato;
Kim, Mi Hee;
Tanaka, Yoichiro;
Kurihara, Yasuyuki;
Kohno, Toshiyuki;
Watanabe, Satoru;
Yokoyama, Shigeyuki;
Watanabe, Kimitsuna;
Uesugi, Seiichi

Publication type:

Article

Properties of Hepatitis Delta Virus Ribozyme, Which Consists of Three RNA Oligomer Strands1.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 6, p. 1123, doi. 10.1093/oxfordjournals.jbchem.a021704

By:

Sakamoto, Taiichi;
Tanaka, Yoichiro;
Kuwabara, Tomoko;
Kim, Mi Hee;
Kurihara, Yasuyuki;
Katahira, Masato;
Uesugi, Seiichi

Publication type:

Article

Properties of a Hammerhead Ribozyme with Deletion of Stem II1.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 2, p. 288, doi. 10.1093/oxfordjournals.jbchem.a021585

By:

Sakamoto, Taiichi;
Kim, Mi Hee;
Kurihara, Yasuyuki;
Sasaki, Nobuyuki;
Noguchi, Tomoaki;
Katahira, Masato;
Uesugi, Seiichi

Publication type:

Article

A G‐quadruplex‐forming RNA aptamer binds to the MTG8 TAFH domain and dissociates the leukemic AML1‐MTG8 fusion protein from DNA.

Published in:

FEBS Letters, 2020, v. 594, n. 21, p. 3477, doi. 10.1002/1873-3468.13914

By:

Fukunaga, Junichi;
Nomura, Yusuke;
Tanaka, Yoichiro;
Torigoe, Hidetaka;
Nakamura, Yoshikazu;
Sakamoto, Taiichi;
Kozu, Tomoko

Publication type:

Article

A trifunctional, triangular RNA–protein complex.

Published in:

FEBS Letters, 2015, v. 589, n. 18, p. 2424, doi. 10.1016/j.febslet.2015.07.005

By:

Ohuchi, Shoji J.;
Sagawa, Fumihiko;
Sakamoto, Taiichi;
Inoue, Tan

Publication type:

Article

Artificial cationic peptides that increase nuclease resistance of siRNA without disturbing RNAi activity.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2019, v. 38, n. 5, p. 338, doi. 10.1080/15257770.2018.1543890

By:

Maeda, Yusuke;
Iwata Hara, Rintaro;
Nishina, Kazutaka;
Yoshida-Tanaka, Kie;
Sakamoto, Taiichi;
Yokota, Takanori;
Wada, Takeshi

Publication type:

Article

Solution Structure of a GAAG Tetraloop in Helix 6 of SRP RNA from Pyrococcus furiosus.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2006, v. 25, n. 4-6, p. 383, doi. 10.1080/15257770600683979

By:

Okada, Kiyoshi;
Takahashi, Mari;
Sakamoto, Taiichi;
Kawai, Gota;
Nakamura, Kouji;
Kanai, Akio

Publication type:

Article

Analysis of Local Convergence in NMR Structure Calculation for RNA by a Classification System for Nucleic Acid Structure (CSNA).

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2004, v. 23, n. 4, p. 691, doi. 10.1081/NCN-120037509

By:

Someya, Tatsuhiko;
Sakamoto, Taiichi;
Takasu, Akitsugu;
Kawai, Gota

Publication type:

Article

Amelioration of Alzheimer's Disease by Gut-Pancreas-Liver-Brain Interaction in an App Knock-In Mouse Model.

Published in:

Life (2075-1729), 2022, v. 12, n. 1, p. 34, doi. 10.3390/life12010034

By:

Minamisawa, Mayumi;
Sato, Yuma;
Ishiguro, Eitarou;
Taniai, Tetsuyuki;
Sakamoto, Taiichi;
Kawai, Gota;
Saito, Takashi;
Saido, Takaomi C.

Publication type:

Article

Structural basis for the interaction between the first SURP domain of the SF3A1 subunit in U2 snRNP and the human splicing factor SF1.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 10, p. 1, doi. 10.1002/pro.4437

By:

Nameki, Nobukazu;
Takizawa, Masayuki;
Suzuki, Takayuki;
Tani, Shoko;
Kobayashi, Naohiro;
Sakamoto, Taiichi;
Muto, Yutaka;
Kuwasako, Kanako

Publication type:

Article

Crystal structure and calcium‐induced conformational changes of diacylglycerol kinase α EF‐hand domains.

Published in:

Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 4, p. 694, doi. 10.1002/pro.3572

By:

Takahashi, Daisuke;
Suzuki, Kano;
Sakamoto, Taiichi;
Iwamoto, Takeo;
Murata, Takeshi;
Sakane, Fumio

Publication type:

Article

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment.

Published in:

Protein Science: A Publication of the Protein Society, 2017, v. 26, n. 2, p. 280, doi. 10.1002/pro.3080

By:

Kuwasako, Kanako;
Nameki, Nobukazu;
Tsuda, Kengo;
Takahashi, Mari;
Sato, Atsuko;
Tochio, Naoya;
Inoue, Makoto;
Terada, Takaho;
Kigawa, Takanori;
Kobayashi, Naohiro;
Shirouzu, Mikako;
Ito, Takuhiro;
Sakamoto, Taiichi;
Wakamatsu, Kaori;
Güntert, Peter;
Takahashi, Seizo;
Yokoyama, Shigeyuki;
Muto, Yutaka

Publication type:

Article

Selection and characterization of aptamers targeting the Vif-CBFβ-ELOB-ELOC-CUL5 complex.

Published in:

Journal of Biochemistry, 2024, v. 176, n. 3, p. 205, doi. 10.1093/jb/mvae040

By:

Kumagai, Kazuyuki;
Kamba, Keisuke;
Suzuki, Takuya;
Sekikawa, Yuto;
Yuki, Chisato;
Hamada, Michiaki;
Nagata, Kayoko;
Takaori-Kondo, Akifumi;
Wan, Li;
Katahira, Masato;
Nagata, Takashi;
Sakamoto, Taiichi

Publication type:

Article

Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.

Published in:

Journal of Biochemistry, 2024, v. 175, n. 6, p. 671, doi. 10.1093/jb/mvae010

By:

Kawai, Gota;
Okada, Kiyoshi;
Baba, Seiki;
Sato, Asako;
Sakamoto, Taiichi;
Kanai, Akio

Publication type:

Article

Selection of aptamers using β-1,3-glucan recognition protein-tagged proteins and curdlan beads.

Published in:

Journal of Biochemistry, 2023, v. 174, n. 5, p. 433, doi. 10.1093/jb/mvad059

By:

Kumagai, Kazuyuki;
Okubo, Hiroki;
Amano, Ryo;
Kozu, Tomoko;
Ochiai, Masanori;
Horiuchi, Masataka;
Sakamoto, Taiichi

Publication type:

Article

Conjugation of two RNA aptamers improves binding affinity to AML1 Runt domain.

Published in:

Journal of Biochemistry, 2017, v. 162, n. 6, p. 431, doi. 10.1093/jb/mvx049

By:

Yusuke Nomura;
Kaori Yamazaki;
Ryo Amano;
Kenta Takada;
Takashi Nagata;
Naohiro Kobayashi;
Yoichiro Tanaka;
Junichi Fukunaga;
Masato Katahira;
Tomoko Kozu;
Yoshikazu Nakamura;
Yuji Haishima;
Hidetaka Torigoe;
Taiichi Sakamoto

Publication type:

Article

Two stems with different characteristics and an internal loop in an RNA aptamer contribute to spermine-binding.

Published in:

Journal of Biochemistry, 2017, v. 161, n. 2, p. 197, doi. 10.1093/jb/mvw062

By:

Akihiro Oguro;
Asumi Yanagida;
Yuta Fujieda;
Ryo Amano;
Maina Otsu;
Taiichi Sakamoto;
Gota Kawai;
Senya Matsufuji

Publication type:

Article

Solution structure of a DNA mimicking motif of an RNA aptamer against transcription factor AML1 Runt domain.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 513, doi. 10.1093/jb/mvt082

By:

Nomura, Yusuke;
Tanaka, Yoichiro;
Fukunaga, Jun-ichi;
Fujiwara, Kazuya;
Chiba, Manabu;
Iibuchi, Hiroaki;
Tanaka, Taku;
Nakamura, Yoshikazu;
Kawai, Gota;
Kozu, Tomoko;
Sakamoto, Taiichi

Publication type:

Article

Development of the 12-Base Short Dimeric Myogenetic Oligodeoxynucleotide That Induces Myogenic Differentiation.

Published in:

BioTech, 2024, v. 13, n. 2, p. 11, doi. 10.3390/biotech13020011

By:

Umezawa, Koji;
Ikeda, Rena;
Sakamoto, Taiichi;
Enomoto, Yuya;
Nihashi, Yuma;
Shinji, Sayaka;
Shimosato, Takeshi;
Kagami, Hiroshi;
Takaya, Tomohide

Publication type:

Article

Characterisation of an aptamer against the Runt domain of AML1 (RUNX1) by NMR and mutational analyses.

Published in:

FEBS Open Bio, 2018, v. 8, n. 2, p. 264, doi. 10.1002/2211-5463.12368

By:

Takada, Kenta;
Amano, Ryo;
Nomura, Yusuke;
Tanaka, Yoichiro;
Sugiyama, Shigeru;
Nagata, Takashi;
Katahira, Masato;
Nakamura, Yoshikazu;
Kozu, Tomoko;
Sakamoto, Taiichi

Publication type:

Article

Altered‐specificity mutants of the HIV Rev arginine‐rich motif‐RRE IIB interaction.

Published in:

Journal of Molecular Recognition, 2020, v. 33, n. 6, p. 1, doi. 10.1002/jmr.2833

By:

Raad, Nicole G.;
Ghattas, Ingrid R.;
Amano, Ryo;
Watanabe, Natsuki;
Sakamoto, Taiichi;
Smith, Colin A.

Publication type:

Article

Polyamines stimulate the CHSY1 synthesis through the unfolding of the RNA G-quadruplex at the 50-untraslated region.

Published in:

Biochemical Journal, 2018, v. 475, n. 23, p. 3797, doi. 10.1042/BCJ20180672

By:

Katsutoshi Yamaguchi;
Kiryu Asakura;
Masataka Imamura;
Gota Kawai;
Taiichi Sakamoto;
Tomomi Furihata;
Linhardt, Robert J.;
Kazuei Igarashi;
Toshihiko Toida;
Kyohei Higashi

Publication type:

Article

Specific inhibition of FGF5-induced cell proliferation by RNA aptamers.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82350-w

By:

Amano, Ryo;
Namekata, Masato;
Horiuchi, Masataka;
Saso, Minami;
Yanagisawa, Takuya;
Tanaka, Yoichiro;
Ghani, Farhana Ishrat;
Yamamoto, Masakuni;
Sakamoto, Taiichi

Publication type:

Article

Cleavage reaction of HDV ribozymes in the presence of Mg2+ is accompanied by a conformational change.

Published in:

Genes to Cells, 2002, v. 7, n. 6, p. 567, doi. 10.1046/j.1365-2443.2002.00541.x

By:

Tanaka, Yoichiro;
Tagaya, Mitsuhiro;
Hori, Tamaki;
Sakamoto, Taiichi;
Kurihara, Yasuyuki;
Katahira, Masato;
Uesugi, Seiichi

Publication type:

Article

Covalent Incorporation of Methyl Red Dyes into Double-Stranded DNA for Their Ordered Clustering.

Published in:

Chemistry - A European Journal, 2006, v. 12, n. 3, p. 777, doi. 10.1002/chem.200500111

By:

Hiromu Kashida;
Masayuki Tanaka;
Seiki Baba;
Taiichi Sakamoto;
Gota Kawai;
Hiroyuki Asanuma;
Makoto Komiyama

Publication type:

Article

1H, 13C and 15N Resonance Assignments of the 2′-5′ RNA Ligase-like Protein from Pyrococcus furiosus.

Published in:

Journal of Biomolecular NMR, 2006, v. 36, p. 16, doi. 10.1007/s10858-005-5581-8

By:

Okada, Kiyoshi;
Matsuda, Takashi;
Sakamoto, Taiichi;
Muto, Yutaka;
Yokoyama, Shigeyuki;
Kanai, Akio;
Kawai, Gota

Publication type:

Article

Selection, Characterization and Application of Artificial DNA Aptamer Containing Appended Bases with Sub-nanomolar Affinity for a Salivary Biomarker.

Published in:

Scientific Reports, 2017, p. 42716, doi. 10.1038/srep42716

By:

Minagawa, Hirotaka;
Onodera, Kentaro;
Fujita, Hiroto;
Sakamoto, Taiichi;
Akitomi, Joe;
Kaneko, Naoto;
Shiratori, Ikuo;
Kuwahara, Masayasu;
Horii, Katsunori;
Waga, Iwao

Publication type:

Article

Works by Sakamoto, Taiichi

NMR study of aptamers.

Conformational plasticity of RNA for target recognition as revealed by the 2.15 Å crystal structure of a human IgG–aptamer complex.

Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2.

NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A.

Imino proton NMR analysis of HDV ribozymes: nested double pseudoknot structure and Mg2+ ion-binding site close to the catalytic core in solution.

Mammalian Bcnt/Cfdp1, a potential epigenetic factor characterized by an acidic stretch in the disordered N-terminal and Ser<sup>250</sup> phosphorylation in the conserved C-terminal regions.

Solution Structure of a SRP19 Binding Domain in Human SRP RNA1.

Hairpin Structure of an RNA 28-mer, Which Contains a Sequence of the Enzyme Component of a Hammerhead Ribozyme System: Evidence for Tandem G: A Pairs That Are Not of Side-by-Side Type1.

Properties of Hepatitis Delta Virus Ribozyme, Which Consists of Three RNA Oligomer Strands1.

Properties of a Hammerhead Ribozyme with Deletion of Stem II1.

A G‐quadruplex‐forming RNA aptamer binds to the MTG8 TAFH domain and dissociates the leukemic AML1‐MTG8 fusion protein from DNA.

A trifunctional, triangular RNA–protein complex.

Artificial cationic peptides that increase nuclease resistance of siRNA without disturbing RNAi activity.

Solution Structure of a GAAG Tetraloop in Helix 6 of SRP RNA from Pyrococcus furiosus.

Analysis of Local Convergence in NMR Structure Calculation for RNA by a Classification System for Nucleic Acid Structure (CSNA).

Amelioration of Alzheimer's Disease by Gut-Pancreas-Liver-Brain Interaction in an App Knock-In Mouse Model.

Structural basis for the interaction between the first SURP domain of the SF3A1 subunit in U2 snRNP and the human splicing factor SF1.

Crystal structure and calcium‐induced conformational changes of diacylglycerol kinase α EF‐hand domains.

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment.

Selection and characterization of aptamers targeting the Vif-CBFβ-ELOB-ELOC-CUL5 complex.

Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.

Selection of aptamers using β-1,3-glucan recognition protein-tagged proteins and curdlan beads.

Conjugation of two RNA aptamers improves binding affinity to AML1 Runt domain.

Two stems with different characteristics and an internal loop in an RNA aptamer contribute to spermine-binding.

Solution structure of a DNA mimicking motif of an RNA aptamer against transcription factor AML1 Runt domain.

Development of the 12-Base Short Dimeric Myogenetic Oligodeoxynucleotide That Induces Myogenic Differentiation.

Characterisation of an aptamer against the Runt domain of AML1 (RUNX1) by NMR and mutational analyses.

Altered‐specificity mutants of the HIV Rev arginine‐rich motif‐RRE IIB interaction.

Polyamines stimulate the CHSY1 synthesis through the unfolding of the RNA G-quadruplex at the 50-untraslated region.

Specific inhibition of FGF5-induced cell proliferation by RNA aptamers.

Cleavage reaction of HDV ribozymes in the presence of Mg<sup>2+</sup> is accompanied by a conformational change.

Covalent Incorporation of Methyl Red Dyes into Double-Stranded DNA for Their Ordered Clustering.

<sup>1</sup>H, <sup>13</sup>C and <sup>15</sup>N Resonance Assignments of the 2′-5′ RNA Ligase-like Protein from Pyrococcus furiosus.

Selection, Characterization and Application of Artificial DNA Aptamer Containing Appended Bases with Sub-nanomolar Affinity for a Salivary Biomarker.