Works matching AU Saez-Rodriguez, Julio

Results: 153
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    Unveiling the role of sex in the metabolism of indoxyl sulfate and apixaban.

    Published in:
    Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-90405-5
    By:
    • Pina-Beltran, Blanca;
    • Dimitrov, Daniel;
    • McKay, Nathalie;
    • Giot, Matthieu;
    • Zdráhal, Zbyněk;
    • Potěšil, David;
    • Pustka, Václav;
    • Peinado-Izaguerri, Jorge;
    • Saez-Rodriguez, Julio;
    • Poitevin, Stéphane;
    • Burtey, Stéphane
    Publication type:
    Article
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    Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-023-44117-x
    By:
    • Ghasemi, David R.;
    • Okonechnikov, Konstantin;
    • Rademacher, Anne;
    • Tirier, Stephan;
    • Maass, Kendra K.;
    • Schumacher, Hanna;
    • Joshi, Piyush;
    • Gold, Maxwell P.;
    • Sundheimer, Julia;
    • Statz, Britta;
    • Rifaioglu, Ahmet S.;
    • Bauer, Katharina;
    • Schumacher, Sabrina;
    • Bortolomeazzi, Michele;
    • Giangaspero, Felice;
    • Ernst, Kati J.;
    • Clifford, Steven C.;
    • Saez-Rodriguez, Julio;
    • Jones, David T. W.;
    • Kawauchi, Daisuke
    Publication type:
    Article
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    Author Correction: Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage.

    Published in:
    2024
    By:
    • Ghasemi, David R.;
    • Okonechnikov, Konstantin;
    • Rademacher, Anne;
    • Tirier, Stephan;
    • Maass, Kendra K.;
    • Schumacher, Hanna;
    • Joshi, Piyush;
    • Gold, Maxwell P.;
    • Sundheimer, Julia;
    • Statz, Britta;
    • Rifaioglu, Ahmet S.;
    • Bauer, Katharina;
    • Schumacher, Sabrina;
    • Bortolomeazzi, Michele;
    • Giangaspero, Felice;
    • Ernst, Kati J.;
    • Clifford, Steven C.;
    • Saez-Rodriguez, Julio;
    • Jones, David T. W.;
    • Kawauchi, Daisuke
    Publication type:
    Correction Notice
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    Network integration of thermal proteome profiling with multi-omics data decodes PARP inhibition.

    Published in:
    Molecular Systems Biology, 2024, v. 20, n. 4, p. 458, doi. 10.1038/s44320-024-00025-w
    By:
    • Burtscher, Mira L;
    • Gade, Stephan;
    • Garrido-Rodriguez, Martin;
    • Rutkowska, Anna;
    • Werner, Thilo;
    • Eberl, H Christian;
    • Petretich, Massimo;
    • Knopf, Natascha;
    • Zirngibl, Katharina;
    • Grandi, Paola;
    • Bergamini, Giovanna;
    • Bantscheff, Marcus;
    • Fälth-Savitski, Maria;
    • Saez-Rodriguez, Julio
    Publication type:
    Article
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    Single‐cell biology: what does the future hold?

    Published in:
    Molecular Systems Biology, 2023, v. 19, n. 7, p. 1, doi. 10.15252/msb.202311799
    By:
    • Polychronidou, Maria;
    • Hou, Jingyi;
    • Babu, M Madan;
    • Liberali, Prisca;
    • Amit, Ido;
    • Deplancke, Bart;
    • Lahav, Galit;
    • Itzkovitz, Shalev;
    • Mann, Matthias;
    • Saez‐Rodriguez, Julio;
    • Theis, Fabian;
    • Eils, Roland
    Publication type:
    Article
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    The human hepatocyte TXG-MAPr: gene co-expression network modules to support mechanism-based risk assessment.

    Published in:
    Archives of Toxicology, 2021, v. 95, n. 12, p. 3745, doi. 10.1007/s00204-021-03141-w
    By:
    • Callegaro, Giulia;
    • Kunnen, Steven J.;
    • Trairatphisan, Panuwat;
    • Grosdidier, Solène;
    • Niemeijer, Marije;
    • den Hollander, Wouter;
    • Guney, Emre;
    • Piñero Gonzalez, Janet;
    • Furlong, Laura;
    • Webster, Yue W.;
    • Saez-Rodriguez, Julio;
    • Sutherland, Jeffrey J.;
    • Mollon, Jennifer;
    • Stevens, James L.;
    • van de Water, Bob
    Publication type:
    Article
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    New insights into the mechanisms underlying 5-fluorouracil-induced intestinal toxicity based on transcriptomic and metabolomic responses in human intestinal organoids.

    Published in:
    Archives of Toxicology, 2021, v. 95, n. 8, p. 2691, doi. 10.1007/s00204-021-03092-2
    By:
    • Rodrigues, Daniela;
    • de Souza, Terezinha;
    • Coyle, Luke;
    • Di Piazza, Matteo;
    • Herpers, Bram;
    • Ferreira, Sofia;
    • Zhang, Mian;
    • Vappiani, Johanna;
    • Sévin, Daniel C.;
    • Gabor, Attila;
    • Lynch, Anthony;
    • Chung, Seung-Wook;
    • Saez-Rodriguez, Julio;
    • Jennen, Danyel G. J.;
    • Kleinjans, Jos C. S.;
    • de Kok, Theo M.
    Publication type:
    Article
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    Influence of Liver Fibrosis on Lobular Zonation.

    Published in:
    Cells (2073-4409), 2019, v. 8, n. 12, p. 1556, doi. 10.3390/cells8121556
    By:
    • Ghallab, Ahmed;
    • Myllys, Maiju;
    • H. Holland, Christian;
    • Zaza, Ayham;
    • Murad, Walaa;
    • Hassan, Reham;
    • A. Ahmed, Yasser;
    • Abbas, Tahany;
    • A. Abdelrahim, Eman;
    • Schneider, Kai Markus;
    • Matz-Soja, Madlen;
    • Reinders, Jörg;
    • Gebhardt, Rolf;
    • Berres, Marie-Luise;
    • Hatting, Maximilian;
    • Drasdo, Dirk;
    • Saez-Rodriguez, Julio;
    • Trautwein, Christian;
    • G. Hengstler, Jan
    Publication type:
    Article
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    The spatial transcriptomic landscape of the healing mouse intestine following damage.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28497-0
    By:
    • Parigi, Sara M.;
    • Larsson, Ludvig;
    • Das, Srustidhar;
    • Ramirez Flores, Ricardo O.;
    • Frede, Annika;
    • Tripathi, Kumar P.;
    • Diaz, Oscar E.;
    • Selin, Katja;
    • Morales, Rodrigo A.;
    • Luo, Xinxin;
    • Monasterio, Gustavo;
    • Engblom, Camilla;
    • Gagliani, Nicola;
    • Saez-Rodriguez, Julio;
    • Lundeberg, Joakim;
    • Villablanca, Eduardo J.
    Publication type:
    Article
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    Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways.

    Published in:
    NPJ Systems Biology & Applications, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41540-022-00224-x
    By:
    • Poletti, Martina;
    • Treveil, Agatha;
    • Csabai, Luca;
    • Gul, Leila;
    • Modos, Dezso;
    • Madgwick, Matthew;
    • Olbei, Marton;
    • Bohar, Balazs;
    • Valdeolivas, Alberto;
    • Turei, Denes;
    • Verstockt, Bram;
    • Triana, Sergio;
    • Alexandrov, Theodore;
    • Saez-Rodriguez, Julio;
    • Stanifer, Megan L.;
    • Boulant, Steeve;
    • Korcsmaros, Tamas
    Publication type:
    Article
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    Inferring clonal composition from multiple tumor biopsies.

    Published in:
    NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41540-020-00147-5
    By:
    • Manica, Matteo;
    • Kim, Hyunjae Ryan;
    • Mathis, Roland;
    • Chouvarine, Philippe;
    • Rutishauser, Dorothea;
    • De Vargas Roditi, Laura;
    • Szalai, Bence;
    • Wagner, Ulrich;
    • Oehl, Kathrin;
    • Saba, Karim;
    • Pati, Arati;
    • Saez-Rodriguez, Julio;
    • Roy, Angshumoy;
    • Parsons, Donald W.;
    • Wild, Peter J.;
    • Martínez, María Rodríguez;
    • Sumazin, Pavel
    Publication type:
    Article
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    Transcription Factor Activity Inference in Systemic Lupus Erythematosus.

    Published in:
    Life (2075-1729), 2021, v. 11, n. 4, p. 299, doi. 10.3390/life11040299
    By:
    • Lopez-Dominguez, Raul;
    • Toro-Dominguez, Daniel;
    • Martorell-Marugan, Jordi;
    • Garcia-Moreno, Adrian;
    • Holland, Christian H.;
    • Saez-Rodriguez, Julio;
    • Goldman, Daniel;
    • Petri, Michelle A.;
    • Alarcon-Riquelme, Marta E.;
    • Carmona-Saez, Pedro
    Publication type:
    Article
    40

    Deficiency of myeloid PHD proteins aggravates atherogenesis via macrophage apoptosis and paracrine fibrotic signalling.

    Published in:
    Cardiovascular Research, 2022, v. 118, n. 5, p. 1232, doi. 10.1093/cvr/cvab152
    By:
    • Kuijk, Kim van;
    • Demandt, Jasper A F;
    • Perales-Patón, Javier;
    • Theelen, Thomas L;
    • Kuppe, Christoph;
    • Marsch, Elke;
    • Bruijn, Jenny de;
    • Jin, Han;
    • Gijbels, Marion J;
    • Matic, Ljubica;
    • Mees, Barend M E;
    • Reutelingsperger, Chris P M;
    • Hedin, Ulf;
    • Biessen, Erik A L;
    • Carmeliet, Peter;
    • Baker, Andrew H;
    • Kramann, Rafael K;
    • Schurgers, Leon J;
    • Saez-Rodriguez, Julio;
    • Sluimer, Judith C
    Publication type:
    Article
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    Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.

    Published in:
    Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1848, doi. 10.1093/bib/bbaa046
    By:
    • Niarakis, Anna;
    • Kuiper, Martin;
    • Ostaszewski, Marek;
    • Sheriff, Rahuman S Malik;
    • Casals-Casas, Cristina;
    • Thieffry, Denis;
    • Freeman, Tom C;
    • Thomas, Paul;
    • Touré, Vasundra;
    • Noël, Vincent;
    • Stoll, Gautier;
    • Saez-Rodriguez, Julio;
    • Naldi, Aurélien;
    • Oshurko, Eugenia;
    • Xenarios, Ioannis;
    • Soliman, Sylvain;
    • Chaouiya, Claudine;
    • Helikar, Tomáš;
    • Calzone, Laurence
    Publication type:
    Article
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    Imbalanced gut microbiota fuels hepatocellular carcinoma development by shaping the hepatic inflammatory microenvironment.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31312-5
    By:
    • Schneider, Kai Markus;
    • Mohs, Antje;
    • Gui, Wenfang;
    • Galvez, Eric J. C.;
    • Candels, Lena Susanna;
    • Hoenicke, Lisa;
    • Muthukumarasamy, Uthayakumar;
    • Holland, Christian H.;
    • Elfers, Carsten;
    • Kilic, Konrad;
    • Schneider, Carolin Victoria;
    • Schierwagen, Robert;
    • Strnad, Pavel;
    • Wirtz, Theresa H.;
    • Marschall, Hanns-Ulrich;
    • Latz, Eicke;
    • Lelouvier, Benjamin;
    • Saez-Rodriguez, Julio;
    • de Vos, Willem;
    • Strowig, Till
    Publication type:
    Article
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    A single-sample workflow for joint metabolomic and proteomic analysis of clinical specimens.

    Published in:
    Clinical Proteomics, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12014-024-09501-9
    By:
    • Gegner, Hagen M.;
    • Naake, Thomas;
    • Aljakouch, Karim;
    • Dugourd, Aurelien;
    • Kliewer, Georg;
    • Müller, Torsten;
    • Schilling, Dustin;
    • Schneider, Marc A.;
    • Kunze-Rohrbach, Nina;
    • Grünewald, Thomas G.P.;
    • Hell, Rüdiger;
    • Saez-Rodriguez, Julio;
    • Huber, Wolfgang;
    • Poschet, Gernot;
    • Krijgsveld, Jeroen
    Publication type:
    Article
    50

    A Logical Model Provides Insights into T Cell Receptor Signaling.

    Published in:
    PLoS Computational Biology, 2007, v. 3, n. 8, p. 1580, doi. 10.1371/journal.pcbi.0030163
    By:
    • Saez-Rodriguez, Julio;
    • Simeoni, Luca;
    • Lindquist, Jonathan A.;
    • Hemenway, Rebecca;
    • Bommhardt, Ursula;
    • Arndt, Boerge;
    • Haus, Utz-Uwe;
    • Weismantel, Robert;
    • Gilles, Ernst D.;
    • Klamt, Steffen;
    • Schraven, Burkhart
    Publication type:
    Article