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Non-coding variants impact cis-regulatory coordination in a cell type-specific manner.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03333-4
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Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes.
- Published in:
- eLife, 2023, p. 1, doi. 10.7554/eLife.82201
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- Article
Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24152-2
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- Article
TinGa: fast and flexible trajectory inference with Growing Neural Gas.
- Published in:
- Bioinformatics, 2020, v. 36, p. i66, doi. 10.1093/bioinformatics/btaa463
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- Article
A scalable SCENIC workflow for single-cell gene regulatory network analysis.
- Published in:
- Nature Protocols, 2020, v. 15, n. 7, p. 2247, doi. 10.1038/s41596-020-0336-2
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- Article
Trajectory-based differential expression analysis for single-cell sequencing data.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14766-3
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- Article
Essential guidelines for computational method benchmarking.
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- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1738-8
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- Article
A comparison of single-cell trajectory inference methods.
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- Nature Biotechnology, 2019, v. 37, n. 5, p. 547, doi. 10.1038/s41587-019-0071-9
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- Article
A comprehensive evaluation of module detection methods for gene expression data.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03424-4
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- Article
Computational methods for trajectory inference from single-cell transcriptomics.
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- European Journal of Immunology, 2016, v. 46, n. 11, p. 2496, doi. 10.1002/eji.201646347
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- Article