Works by Sablok, Gaurav

Results: 57

Identification of Low Temperature Stress Regulated Transcript Sequences and Gene Families in Italian Cypress.

Published in:

Molecular Biotechnology, 2015, v. 57, n. 5, p. 407, doi. 10.1007/s12033-014-9833-2

By:

Porta, Nicola;
Sablok, Gaurav;
Emilliani, Giovanni;
Hietala, Ari;
Giovannelli, Alessio;
Fontana, Paolo;
Potenza, Emilio;
Baldi, Paolo

Publication type:

Article

Synonymous Codon Usage, GC, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots.

Published in:

Molecular Biotechnology, 2011, v. 49, n. 2, p. 116, doi. 10.1007/s12033-011-9383-9

By:

Sablok, Gaurav;
Nayak, Kinshuk;
Vazquez, Franck;
Tatarinova, Tatiana

Publication type:

Article

Comparative assessment of chloroplast transcriptional responses highlights conserved and unique patterns across Triticeae members under salt stress.

Published in:

Photosynthesis Research, 2018, v. 136, n. 3, p. 357, doi. 10.1007/s11120-017-0469-5

By:

Mirzaei, Saeid;
Mansouri, Mehdi;
Mohammadi-Nejad, Ghasem;
Sablok, Gaurav

Publication type:

Article

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua.

Published in:

Biotechnology Letters, 2012, v. 34, n. 4, p. 737, doi. 10.1007/s10529-011-0808-0

By:

Pérez-Quintero, Álvaro;
Sablok, Gaurav;
Tatarinova, Tatiana;
Conesa, Ana;
Kuo, Jimmy;
López, Camilo

Publication type:

Article

Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: a emerging model biosystem for plant functional genomics.

Published in:

Biotechnology Letters, 2011, v. 33, n. 3, p. 629, doi. 10.1007/s10529-010-0475-6

By:

Sablok, Gaurav;
Gupta, P. K.;
Baek, Jong-Min;
Vazquez, Franck;
Xiang Jia Min

Publication type:

Article

Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1914-5

By:

Xiang Jia Min;
Powell, Brian;
Braessler, Jonathan;
Meinken, John;
Feng Yu;
Sablok, Gaurav

Publication type:

Article

Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1498-0

By:

Shiliang Hu;
Sablok, Gaurav;
Bo Wang;
Dong Qu;
Barbaro, Enrico;
Viola, Roberto;
Mingai Li;
Varotto, Claudio

Publication type:

Article

Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 306, doi. 10.1186/s12864-015-1498-0

By:

Shiliang Hu;
Sablok, Gaurav;
Bo Wang;
Dong Qu;
Barbaro, Enrico;
Viola, Roberto;
Mingai Li;
Varotto, Claudio

Publication type:

Article

Sequencing the Plastid Genome of Giant Ragweed (Ambrosia trifida , Asteraceae) From a Herbarium Specimen.

Published in:

Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00218

By:

Sablok, Gaurav;
Amiryousefi, Ali;
He, Xiaolan;
Hyvönen, Jaakko;
Poczai, Péter

Publication type:

Article

Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants.

Published in:

Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2018.01881

By:

Yang, Kun;
Wen, Xiaopeng;
Mudunuri, Suresh B.;
Sablok, Gaurav

Publication type:

Article

Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages.

Published in:

3 Biotech, 2011, v. 1, n. 1, p. 35, doi. 10.1007/s13205-011-0005-9

By:

Sablok, Gaurav;
Luo, Chun;
Lee, Wan;
Rahman, Farzana;
Tatarinova, Tatiana;
Harikrishna, Jennifer;
Luo, Zhengrong

Publication type:

Article

Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum.

Published in:

American Journal of Botany, 2022, v. 109, n. 4, p. 580, doi. 10.1002/ajb2.1827

By:

Gagnon, Edeline;
Hilgenhof, Rebecca;
Orejuela, Andrés;
McDonnell, Angela;
Sablok, Gaurav;
Aubriot, Xavier;
Giacomin, Leandro;
Gouvêa, Yuri;
Bragionis, Thamyris;
Stehmann, João Renato;
Bohs, Lynn;
Dodsworth, Steven;
Martine, Christopher;
Poczai, Péter;
Knapp, Sandra;
Särkinen, Tiina

Publication type:

Article

Review: role of carbon sources for in vitro plant growth and development.

Published in:

Molecular Biology Reports, 2013, v. 40, n. 4, p. 2837, doi. 10.1007/s11033-012-2299-z

By:

Yaseen, Mehwish;
Ahmad, Touqeer;
Sablok, Gaurav;
Standardi, Alvaro;
Hafiz, Ishfaq

Publication type:

Article

Draft Genome Sequence of the Nitrogen-Fixing Rhizobium sullae Type Strain IS123T Focusing on the Key Genes for Symbiosis with its Host Hedysarum coronarium L.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01348

By:

Sablok, Gaurav;
Rosselli, Riccardo;
Seeman, Torsten;
van Velzen, Robin;
Polone, Elisa;
Giacomini, Alessio;
La Porta, Nicola;
Geurts, Rene;
Muresu, Rosella;
Squartini, Andrea

Publication type:

Article

Bacterial-induced expression of RAB18 protein in Orzya sativa salinity stress and insights into molecular interaction with GTP ligand.

Published in:

Journal of Molecular Recognition, 2014, v. 27, n. 9, p. 521, doi. 10.1002/jmr.2371

By:

Jha, Yachana;
Sablok, Gaurav;
Subbarao, Naidu;
Sudhakar, Raja;
Fazil, M. H. U. Turabe;
Subramanian, R. B.;
Squartini, Andrea;
Kumar, Sunil

Publication type:

Article

Expression properties exhibit correlated patterns with the fate of duplicated genes, their divergence, and transcriptional plasticity in Saccharomycotina.

Published in:

DNA Research, 2017, v. 24, n. 6, p. 559, doi. 10.1093/dnares/dsx025

By:

Mattenberger, Florian;
Sabater-Muñoz, Beatriz;
Toft, Christina;
Sablok, Gaurav;
Fares, Mario A.

Publication type:

Article

ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications.

Published in:

DNA Research, 2017, v. 24, n. 3, p. 327, doi. 10.1093/dnares/dsw044

By:

Sablok, Gaurav;
Ting-Wen Chen;
Chi-Ching Lee;
Chi Yang;
Ruei-Chi Gan;
Wegrzyn, Jill L.;
Porta, Nicola L.;
Nayak, Kinshuk C.;
Po-Jung Huang;
Varotto, Claudio;
Tang, Petrus

Publication type:

Article

Genome-Wide Landscape of Alternative Splicing Events in Brachypodium distachyon.

Published in:

DNA Research, 2013, v. 20, n. 2, p. 163, doi. 10.1093/dnares/dss041

By:

Walters, Braden;
Lum, Gengkon;
Sablok, Gaurav;
Min, Xiang Jia

Publication type:

Article

ChloroMitoSSRDB: Open Source Repository of Perfect and Imperfect Repeats in Organelle Genomes for Evolutionary Genomics.

Published in:

DNA Research, 2013, v. 20, n. 2, p. 127, doi. 10.1093/dnares/dss038

By:

Sablok, Gaurav;
Mudunuri, Suresh B.;
Patnana, Sujan;
Popova, Martina;
Fares, Mario A.;
Porta, Nicola La

Publication type:

Article

Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags.

Published in:

DNA Research, 2013, v. 20, n. 2, p. 135, doi. 10.1093/dnares/dss039

By:

Ahmad, Touqeer;
Sablok, Gaurav;
Tatarinova, Tatiana V.;
Xu, Qiang;
Deng, Xiu-Xin;
Guo, Wen-Wu

Publication type:

Article

Fuelling genetic and metabolic exploration of C<sub>3</sub> bioenergy crops through the first reference transcriptome of Arundo donax L.

Published in:

Plant Biotechnology Journal, 2014, v. 12, n. 5, p. 554, doi. 10.1111/pbi.12159

By:

Sablok, Gaurav;
Fu, Yuan;
Bobbio, Valentina;
Laura, Marina;
Rotino, Giuseppe L.;
Bagnaresi, Paolo;
Allavena, Andrea;
Velikova, Violeta;
Viola, Roberto;
Loreto, Francesco;
Li, Mingai;
Varotto, Claudio

Publication type:

Article

Emerging Roles and Landscape of Translating mRNAs in Plants.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01443

By:

Sablok, Gaurav;
Powell, Jonathan J.;
Kazan, Kemal

Publication type:

Article

tRNA Derived smallRNAs: smallRNAs Repertoire Has Yet to Be Decoded in Plants.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01167

By:

Sablok, Gaurav;
Kun Yang;
Rui Chen;
Xiaopeng Wen

Publication type:

Article

isomiR2Function: An Integrated Workflow for Identifying MicroRNA Variants in Plants.

Published in:

Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00322

By:

Kun Yang;
Sablok, Gaurav;
Guang Qiao;
Qiong Nie;
Xiaopeng Wen

Publication type:

Article

Microenvironment and phylogenetic diversity of P rochloron inhabiting the surface of crustose didemnid ascidians.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 4121, doi. 10.1111/1462-2920.12983

By:

Nielsen, Daniel A.;
Pernice, Mathieu;
Schliep, Martin;
Sablok, Gaurav;
Jeffries, Thomas C.;
Kühl, Michael;
Wangpraseurt, Daniel;
Ralph, Peter J.;
Larkum, Anthony W. D.

Publication type:

Article

The Evolutionary Basis of Translational Accuracy in Plants.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 7, p. 2363, doi. 10.1534/g3.117.040626

By:

Camiolo, Salvatore;
Sablok, Gaurav;
Porceddu, Andrea

Publication type:

Article

Phylogenomic proof of Recurrent Demipolyploidization and Evolutionary Stalling of the "Triploid Bridge" in Arundo (Poaceae).

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 15, p. 5247, doi. 10.3390/ijms21155247

By:

Jike, Wuhe;
Li, Mingai;
Zadra, Nicola;
Barbaro, Enrico;
Sablok, Gaurav;
Bertorelle, Giorgio;
Rota-Stabelli, Omar;
Varotto, Claudio

Publication type:

Article

High-Throughput RAD-SNP Genotyping for Characterization of Sugar Beet Genotypes.

Published in:

Plant Molecular Biology Reporter, 2014, v. 32, n. 3, p. 691, doi. 10.1007/s11105-013-0685-x

By:

Stevanato, Piergiorgio;
Broccanello, Chiara;
Biscarini, Filippo;
Corvo, Marcello;
Sablok, Gaurav;
Panella, Lee;
Stella, Alessandra;
Concheri, Giuseppe

Publication type:

Article

Quantitative analysis of the naringenin-inducible proteome in Rhizobium leguminosarum by isobaric tagging and mass spectrometry.

Published in:

Proteomics, 2013, v. 13, n. 12/13, p. 1961, doi. 10.1002/pmic.201200472

By:

Tolin, Serena;
Arrigoni, Giorgio;
Moscatiello, Roberto;
Masi, Antonio;
Navazio, Lorella;
Sablok, Gaurav;
Squartini, Andrea

Publication type:

Article

Exploring the phylogeny of the marattialean ferns.

Published in:

Cladistics, 2020, v. 36, n. 6, p. 569, doi. 10.1111/cla.12419

By:

Lehtonen, Samuli;
Poczai, Péter;
Sablok, Gaurav;
Hyvönen, Jaakko;
Karger, Dirk N.;
Flores, Jorge

Publication type:

Article

Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-38932-w

By:

Yang, Kun;
Wen, Xiaopeng;
Mudunuri, Suresh;
Varma, G. P. Saradhi;
Sablok, Gaurav

Publication type:

Article

In silico identification and characterization of a diverse subset of conserved microRNAs in bioenergy crop Arundo donax L.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34982-8

By:

Jike, Wuhe;
Sablok, Gaurav;
Bertorelle, Giorgio;
Li, Mingai;
Varotto, Claudio

Publication type:

Article

miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA--target interaction data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1185

By:

Ahadi, Alireza;
Sablok, Gaurav;
Hutvagner, Gyorgy

Publication type:

Article

Transcriptome analysis reveals the role of the root hairs as environmental sensors to maintain plant functions under water-deficiency conditions.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 4, p. 1079, doi. 10.1093/jxb/erv498

By:

Kwasniewski, Miroslaw;
Daszkowska-Golec, Agata;
Janiak, Agnieszka;
Chwialkowska, Karolina;
Nowakowska, Urszula;
Sablok, Gaurav;
Szarejko, Iwona

Publication type:

Article

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network.

Published in:

Journal of Experimental Botany, 2015, v. 66, n. 5, p. 1489, doi. 10.1093/jxb/eru510

By:

Golicz, Agnieszka A.;
Schliep, Martin;
Lee, Huey Tyng;
Larkum, Anthony W.D.;
Dolferus, Rudy;
Batley, Jacqueline;
Chan, Chon-Kit Kenneth;
Sablok, Gaurav;
Ralph, Peter J.;
Edwards, David

Publication type:

Article

Investigating the Conformational Structure and Potential Site Interactions of SOD Inhibitors on Ec-SOD in Marine Mud Crab Scylla serrata: A Molecular Modeling Approach.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2016, v. 8, n. 3, p. 312, doi. 10.1007/s12539-015-0110-2

By:

Paital, Biswaranjan;
Sablok, Gaurav;
Kumar, Sunil;
Singh, Sanjeev;
Chainy, G.

Publication type:

Article

SBMDb: first whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav111

By:

Iquebal, Mir Asif;
Jaiswal, Sarika;
Angadi, U. B.;
Sablok, Gaurav;
Arora, Vasu;
Kumar, Sunil;
Rai, Anil;
Kumar, Dinesh

Publication type:

Article

ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav084

By:

Sablok, Gaurav;
Raju, G. V. Padma;
Mudunuri, Suresh B.;
Prabha, Ratna;
Singh, Dhananjaya P.;
Baev, Vesselin;
Yahubyan, Galina;
Ralph, Peter J.;
La Porta, Nicola

Publication type:

Article

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

Published in:

Plant Physiology, 2016, v. 172, n. 1, p. 272, doi. 10.1104/pp.16.00868

By:

HueyTyng Lee;
Golicz, Agnieszka A.;
Bayer, Philipp E.;
Yuannian Jiao;
Haibao Tang;
Paterson, Andrew H.;
Sablok, Gaurav;
Krishnaraj, Rahul R.;
Chan, Chon-Kit Kenneth;
Batley, Jacqueline;
Kendrick, Gary A.;
Larkum, Anthony W. D.;
Ralph, Peter J.;
Edwards, David

Publication type:

Article

Integrative analysis of Arabidopsis thaliana transcriptomics reveals intuitive splicing mechanism for circular RNA.

Published in:

FEBS Letters, 2016, v. 590, n. 20, p. 3510, doi. 10.1002/1873-3468.12440

By:

Sun, Xiaoyong;
Wang, Lin;
Ding, Jiechao;
Wang, Yanru;
Wang, Jiansheng;
Zhang, Xiaoyang;
Che, Yulei;
Liu, Ziwei;
Zhang, Xinran;
Ye, Jiazhen;
Wang, Jie;
Sablok, Gaurav;
Deng, Zhiping;
Zhao, Hongwei

Publication type:

Article

nagnag: Identification and quantification of NAGNAG alternative splicing using RNA-Seq data.

Published in:

FEBS Letters, 2015, v. 589, n. 15, p. 1766, doi. 10.1016/j.febslet.2015.05.029

By:

Yan, Xiaoyan;
Sablok, Gaurav;
Feng, Gang;
Ma, Jiaxin;
Zhao, Hongwei;
Sun, Xiaoyong

Publication type:

Article

isomiRex: Web-based identification of microRNAs, isomiR variations and differential expression using next-generation sequencing datasets.

Published in:

FEBS Letters, 2013, v. 587, n. 16, p. 2629, doi. 10.1016/j.febslet.2013.06.047

By:

Sablok, Gaurav;
Milev, Ivan;
Minkov, Georgi;
Minkov, Ivan;
Varotto, Claudio;
Yahubyan, Galina;
Baev, Vesselin

Publication type:

Article

The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.

Published in:

Functional & Integrative Genomics, 2016, v. 16, n. 5, p. 465, doi. 10.1007/s10142-016-0501-4

By:

Davey, Peter;
Pernice, Mathieu;
Sablok, Gaurav;
Larkum, Anthony;
Lee, Huey;
Golicz, Agnieszka;
Edwards, David;
Dolferus, Rudy;
Ralph, Peter

Publication type:

Article

Genome dynamics in three different geographical isolates of white spot syndrome virus (WSSV).

Published in:

2012

By:

Sablok, Gaurav;
Sánchez-Paz, Arturo;
Wu, XianMing;
Ranjan, Jayant;
Kuo, Jimmy;
Bulla, Ingo

Publication type:

Report

Thiourea priming enhances salt tolerance through co-ordinated regulation of microRNAs and hormones in Brassica juncea.

Published in:

Scientific Reports, 2017, p. 45490, doi. 10.1038/srep45490

By:

Srivastava, Ashish Kumar;
Sablok, Gaurav;
Hackenberg, Michael;
Deshpande, Uday;
Suprasanna, Penna

Publication type:

Article

Altools: a user friendly NGS data analyser.

Published in:

Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0110-0

By:

Camiolo, Salvatore;
Sablok, Gaurav;
Porceddu, Andrea

Publication type:

Article

Marine Viruses: the Beneficial Side of a Threat.

Published in:

Applied Biochemistry & Biotechnology, 2014, v. 174, n. 7, p. 2368, doi. 10.1007/s12010-014-1194-6

By:

Sánchez-Paz, Arturo;
Muhlia-Almazan, Adriana;
Saborowski, Reinhard;
García-Carreño, Fernando;
Sablok, Gaurav;
Mendoza-Cano, Fernando

Publication type:

Article

Metabarcoding analysis of the bacterial and fungal communities during the maturation of preparation 500, used in biodynamic agriculture, suggests a rational link between horn and manure: Metabarcoding analysis of the bacterial and fungal communities during the maturation of preparation 500...: M Zanardo et al

Published in:

Environment, Development & Sustainability, 2024, v. 26, n. 12, p. 29891, doi. 10.1007/s10668-023-03144-w

By:

Zanardo, Marina;
Giannattasio, Matteo;
Sablok, Gaurav;
Pindo, Massimo;
La Porta, Nicola;
Lorenzetti, Michele;
Noro, Carlo;
Stevanato, Piergiorgio;
Concheri, Giuseppe;
Squartini, Andrea

Publication type:

Article

AtCircDB: a tissue-specific database for Arabidopsis circular RNAs.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 58, doi. 10.1093/bib/bbx089

By:

Ye, Jiazhen;
Wang, Lin;
Li, Shuzhang;
Zhang, Qinran;
Zhang, Qinglei;
Tang, Wenhao;
Wang, Kai;
Song, Kun;
Sablok, Gaurav;
Sun, Xiaoyong;
Zhao, Hongwei

Publication type:

Article

Molecular dynamic simulation and inhibitor prediction of cysteine synthase structured model as a potential drug target for trichomoniasis.

Published in:

2013

By:

Singh, Satendra;
Sablok, Gaurav;
Farmer, Rohit;
Singh, Atul Kumar;
Gautam, Budhayash;
Kumar, Sunil

Publication type:

Journal Article