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Temperature-Dependent tRNA Modifications in Bacillales.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 16, p. 8823, doi. 10.3390/ijms25168823
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Divergence of Conserved Non-Coding Sequences: Rate Estimates and Relative Rate Tests.
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- Molecular Biology & Evolution, 2004, v. 21, n. 11, p. 2116, doi. 10.1093/molbev/msh221
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- Article
Non-coding RNAs in Ciona intestinalis.
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- Bioinformatics, 2005, v. 21, p. ii77, doi. 10.1093/bioinformatics/bti1113
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- Article
Multiple sequence alignment with user-defined constraints at GOBICS.
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- Bioinformatics, 2005, v. 21, n. 7, p. 1271, doi. 10.1093/bioinformatics/bti142
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- Article
Alignment of RNA base pairing probability matrices.
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- Bioinformatics, 2004, v. 20, n. 14, p. 2222, doi. 10.1093/bioinformatics/bth229
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- Article
OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes.
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- Life Science Alliance, 2021, v. 4, n. 12, p. 1, doi. 10.26508/lsa.202101167
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- Article
'Hypothesis for the Modern RNA World': A pervasive Non-coding RNA-Based Genetic Regulation is a Prerequisite for the Emergence of Multicellular Complexity.
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- Origins of Life & Evolution of the Biosphere, 2011, v. 41, n. 6, p. 587, doi. 10.1007/s11084-011-9262-1
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- Article
Common Features in lncRNA Annotation and Classification: A Survey.
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- Non-Coding RNA, 2021, v. 7, n. 4, p. 77, doi. 10.3390/ncrna7040077
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Changes of the tRNA Modification Pattern during the Development of Dictyostelium discoideum.
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- Non-Coding RNA, 2021, v. 7, n. 2, p. 1, doi. 10.3390/ncrna7020032
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- Article
Cover-Encodings of Fitness Landscapes.
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- Bulletin of Mathematical Biology, 2018, v. 80, n. 8, p. 2154, doi. 10.1007/s11538-018-0451-1
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- Article
plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants.
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- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00708
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- Article
The Cartesian product of hypergraphs.
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- Journal of Graph Theory, 2012, v. 70, n. 2, p. 180, doi. 10.1002/jgt.20609
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- Article
Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38747-4
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- Article
Enhanced radiation sensitivity and radiation recall dermatitis (RRD) after hypericin therapy -- case report and review of literature.
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- Radiation Oncology, 2006, v. 1, p. 32, doi. 10.1186/1748-717X-1-32
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- Article
Structured RNAs and synteny regions in the pig genome.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-459
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- Article
A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04159-8
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- Article
Mitochondrial Genomes in Perkinsus Decode Conserved Frameshifts in All Genes.
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- Molecular Biology & Evolution, 2022, v. 39, n. 10, p. 1, doi. 10.1093/molbev/msac191
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- Article
Matching of Soulmates: Coevolution of snoRNAs and Their Targets.
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- Molecular Biology & Evolution, 2014, v. 31, n. 2, p. 455, doi. 10.1093/molbev/mst209
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- Article
Evolution of 7SK RNA and Its Protein Partners in Metazoa.
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- Molecular Biology & Evolution, 2009, v. 26, n. 12, p. 2821, doi. 10.1093/molbev/msp198
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- Article
Evolution of Vault RNAs.
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- Molecular Biology & Evolution, 2009, v. 26, n. 9, p. 1975, doi. 10.1093/molbev/msp112
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- Article
Solvent Exposure Imparts Similar Selective Pressures across a Range of Yeast Proteins.
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- Molecular Biology & Evolution, 2009, v. 26, n. 5, p. 1155, doi. 10.1093/molbev/msp031
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- Article
Arthropod 7SK RNA.
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- Molecular Biology & Evolution, 2008, v. 25, n. 9, p. 1923, doi. 10.1093/molbev/msn140
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- Article
Near Intron Positions Are Reliable Phylogenetic Markers: An Application to Holometabolous Insects.
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- Molecular Biology & Evolution, 2008, v. 25, n. 5, p. 821, doi. 10.1093/molbev/msn013
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- Article
Potential toxicity of chrysophytes affiliated with Poterioochromonas and related Spumella-like flagellates.
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- Journal of Plankton Research, 2004, v. 26, n. 12, p. 1507, doi. 10.1093/plankt/fbh139
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- Article
In silico Support for Eschenmoser's Glyoxylate Scenario.
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- Israel Journal of Chemistry, 2015, v. 55, n. 8, p. 919, doi. 10.1002/ijch.201400187
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- Article
Trichoplax genomes reveal profound admixture and suggest stable wild populations without bisexual reproduction.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29400-y
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- Article
Competing Endogenous RNA in Colorectal Cancer: An Analysis for Colon, Rectum, and Rectosigmoid Junction.
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- Frontiers in Oncology, 2021, v. 11, p. 1, doi. 10.3389/fonc.2021.681579
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- Article
Led-Seq: ligation-enhanced double-end sequence-based structure analysis of RNA.
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- Nucleic Acids Research, 2023, v. 51, n. 11, p. e63, doi. 10.1093/nar/gkad312
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- Article
Prevalent and distinct spliceosomal 3′-end processing mechanisms for fungal telomerase RNA.
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- Nature Communications, 2015, v. 6, n. 1, p. 6105, doi. 10.1038/ncomms7105
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Progressive Multiple Alignment of Graphs.
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- Algorithms, 2024, v. 17, n. 3, p. 116, doi. 10.3390/a17030116
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- Article
Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs.
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- Algorithms, 2021, v. 14, n. 4, p. 110, doi. 10.3390/a14040110
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Direct Superbubble Detection.
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- Algorithms, 2019, v. 12, n. 4, p. 81, doi. 10.3390/a12040081
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Algebraic Dynamic Programming on Trees.
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- Algorithms, 2017, v. 10, n. 4, p. 135, doi. 10.3390/a10040135
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- Article
Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02199-6
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- Article
Reaction rebalancing: a novel approach to curating reaction databases.
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- Journal of Cheminformatics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13321-024-00875-4
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- Article
DNA methylation signature in blood mirrors successful weight-loss during lifestyle interventions: the CENTRAL trial.
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- Genome Medicine, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13073-020-00794-7
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- Article
Accelerated Evolution of Tissue-Specific Genes Mediates Divergence Amidst Gene Flow in European Green Lizards.
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- Genome Biology & Evolution, 2021, v. 13, n. 8, p. 1, doi. 10.1093/gbe/evab109
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Within-Population Genome Size Variation is Mediated by Multiple Genomic Elements That Segregate Independently during Meiosis.
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- Genome Biology & Evolution, 2019, v. 11, n. 12, p. 3424, doi. 10.1093/gbe/evz253
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- Article
Measuring Transcription Factor–Binding Site Turnover: A Maximum Likelihood Approach Using Phylogenies.
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- Genome Biology & Evolution, 2009, v. 1, p. 85, doi. 10.1093/gbe/evp010
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Clustering systems of phylogenetic networks.
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- Theory in Biosciences, 2023, v. 142, n. 4, p. 301, doi. 10.1007/s12064-023-00398-w
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- Article
Are spliced ncRNA host genes distinct classes of lncRNAs?
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- Theory in Biosciences, 2020, v. 139, n. 4, p. 349, doi. 10.1007/s12064-020-00330-6
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- Article
Average Fitness Differences on NK Landscapes.
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- Theory in Biosciences, 2020, v. 139, n. 1, p. 1, doi. 10.1007/s12064-019-00296-0
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Phylogenetics beyond biology.
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- Theory in Biosciences, 2018, v. 137, n. 2, p. 133, doi. 10.1007/s12064-018-0264-7
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- Article
Design specifications for cellular regulation.
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- Theory in Biosciences, 2016, v. 135, n. 4, p. 231, doi. 10.1007/s12064-016-0239-5
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- Article
The relativity of biological function.
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- Theory in Biosciences, 2015, v. 134, n. 3/4, p. 143, doi. 10.1007/s12064-015-0215-5
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- Article
The correlation of genome size and DNA methylation rate in metazoans.
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- Theory in Biosciences, 2013, v. 132, n. 1, p. 47, doi. 10.1007/s12064-012-0167-y
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- Article
Defining genes: a computational framework.
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- Theory in Biosciences, 2009, v. 128, n. 3, p. 165, doi. 10.1007/s12064-009-0067-y
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- Article
Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha).
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- Theory in Biosciences, 2009, v. 128, n. 2, p. 109, doi. 10.1007/s12064-009-0056-1
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"Genes".
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- Theory in Biosciences, 2008, v. 127, n. 3, p. 215, doi. 10.1007/s12064-008-0025-0
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- Article
The mitochondrial DNA of Xenoturbella bocki: genomic architecture and phylogenetic analysis.
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- Theory in Biosciences, 2007, v. 126, n. 1, p. 35, doi. 10.1007/s12064-007-0007-7
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- Article