Works by Söderberg, Ola

Results: 41

WRAP53 Is Essential for Cajal Body Formation and for Targeting the Survival of Motor Neuron Complex to Cajal Bodies.

Published in:

PLoS Biology, 2010, v. 8, n. 11, p. 1, doi. 10.1371/journal.pbio.1000521

By:

Mahmoudi, Salah;
Henriksson, Sofia;
Weibrecht, Irene;
Smith, Stephen;
Söderberg, Ola;
Strömblad, Staffan;
Wiman, Klas G.;
Farnebo, Marianne

Publication type:

Article

MUC2 mucin is a major carrier of the cancer-associated sialyl-Tn antigen in intestinal metaplasia and gastric carcinomas.

Published in:

Glycobiology, 2010, v. 20, n. 2, p. 199, doi. 10.1093/glycob/cwp161

By:

Conze, Tim;
Carvalho, Ana Sofia;
Landegren, Ulf;
Almeida, Raquel;
Reis, Celso A.;
David, Leonor;
Söderberg, Ola

Publication type:

Article

Molecular tools for a molecular medicine: analyzing genes, transcripts and proteins using padlock and proximity probes.

Published in:

Journal of Molecular Recognition, 2004, v. 17, n. 3, p. 194, doi. 10.1002/jmr.664

By:

Landegren, Ulf;
Schallmeiner, Edith;
Nilsson, Mats;
Fredriksson, Simon;
Banér, Johan;
Gullberg, Mats;
Jarvius, Jonas;
Gustafsdottir, Sigrun;
Dahl, Fredrik;
Söderberg, Ola;
Ericsson, Olle;
Stenberg, Johan

Publication type:

Article

U-2973, a novel B-cell line established from a patient with a mature B-cell leukemia displaying concurrent t(14;18) and MYC translocation to a non- IG gene partner.

Published in:

European Journal of Haematology, 2008, v. 81, n. 3, p. 218, doi. 10.1111/j.1600-0609.2008.01098.x

By:

Boström, Hans;
Leuchowius, Karl-Johan;
Hallböök, Helene;
Nordgren, Ann;
Thörn, Ingrid;
Thorselius, Mia;
Rosenquist, Richard;
Söderberg, Ola;
Sundström, Christer

Publication type:

Article

Detection of glyco-mucin profiles improves specificity of MUC16 and MUC1 biomarkers in ovarian serous tumours.

Published in:

Molecular Oncology, 2015, v. 9, n. 2, p. 503, doi. 10.1016/j.molonc.2014.10.005

By:

Ricardo, Sara;
Marcos-Silva, Lara;
Pereira, Daniela;
Pinto, Rita;
Almeida, Raquel;
Söderberg, Ola;
Mandel, Ulla;
Clausen, Henrik;
Felix, Ana;
Lunet, Nuno;
David, Leonor

Publication type:

Article

Protein expression and cellular localization in two prognostic subgroups of diffuse large B-cell lymphoma: Higher expression of ZAP70 and PKC-β II in the non-germinal center group and poor survival in patients deficient in nuclear PTEN.

Published in:

Leukemia & Lymphoma, 2007, v. 48, n. 11, p. 2221, doi. 10.1080/10428190701636443

By:

Fridberg, Marie;
Servin, Anna;
Anagnostaki, Lola;
Linderoth, Johan;
Berglund, Mattias;
Söderberg, Ola;
Enblad, Gunilla;
Rosén, Anders;
Mustelin, Tomas;
Jerkeman, Mats;
Persson, Jenny L.;
Wingren, Anette Gjörloff

Publication type:

Article

Establishment of a cell line from a chemotherapy resistant diffuse large B-cell lymphoma.

Published in:

Leukemia & Lymphoma, 2007, v. 48, n. 5, p. 1038, doi. 10.1080/10428190701230866

By:

Berglund, Mattias;
Thunberg, Ulf;
Fridberg, Marie;
Wingren, Anette Gjörloff;
Gullbo, Joachim;
Leuchowius, Karl-Johan;
Amini, Rose-Marie;
Lagercrantz, Svetlana;
Horvat, Andrea;
Enblad, Gunilla;
Söderberg, Ola

Publication type:

Article

The importance of E-cadherin binding partners to evaluate the pathogenicity of E-cadherin missense mutations associated to HDGC.

Published in:

European Journal of Human Genetics, 2013, v. 21, n. 3, p. 301, doi. 10.1038/ejhg.2012.159

By:

Figueiredo, Joana;
Söderberg, Ola;
Simões-Correia, Joana;
Grannas, Karin;
Suriano, Gianpaolo;
Seruca, Raquel

Publication type:

Article

Identification of new cancer biomarkers based on aberrant mucin glycoforms by in situ proximity ligation.

Published in:

Journal of Cellular & Molecular Medicine, 2012, v. 16, n. 7, p. 1474, doi. 10.1111/j.1582-4934.2011.01436.x

By:

Pinto, Rita;
Carvalho, Ana S.;
Conze, Tim;
Magalhães, Ana;
Picco, Gianfranco;
Burchell, Joy M.;
Taylor-Papadimitriou, Joyce;
Reis, Celso A.;
Almeida, Raquel;
Mandel, Ulla;
Clausen, Henrik;
Söderberg, Ola;
David, Leonor

Publication type:

Article

Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38015-5

By:

Mihalič, Filip;
Simonetti, Leandro;
Giudice, Girolamo;
Sander, Marie Rubin;
Lindqvist, Richard;
Peters, Marie Berit Akpiroro;
Benz, Caroline;
Kassa, Eszter;
Badgujar, Dilip;
Inturi, Raviteja;
Ali, Muhammad;
Krystkowiak, Izabella;
Sayadi, Ahmed;
Andersson, Eva;
Aronsson, Hanna;
Söderberg, Ola;
Dobritzsch, Doreen;
Petsalaki, Evangelia;
Överby, Anna K.;
Jemth, Per

Publication type:

Article

A method for Boolean analysis of protein interactions at a molecular level.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32395-w

By:

Raykova, Doroteya;
Kermpatsou, Despoina;
Malmqvist, Tony;
Harrison, Philip J.;
Sander, Marie Rubin;
Stiller, Christiane;
Heldin, Johan;
Leino, Mattias;
Ricardo, Sara;
Klemm, Anna;
David, Leonor;
Spjuth, Ola;
Vemuri, Kalyani;
Dimberg, Anna;
Sundqvist, Anders;
Norlin, Maria;
Klaesson, Axel;
Kampf, Caroline;
Söderberg, Ola

Publication type:

Article

Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy.

Published in:

Cytometry. Part A, 2011, v. 79A, n. 7, p. 518, doi. 10.1002/cyto.a.21087

By:

Gavrilovic, Milan;
Weibrecht, Irene;
Conze, Tim;
Söderberg, Ola;
Wählby, Carolina

Publication type:

Article

The effects on growth and survival of IL-6 can be dissociated in the U-266-1970/U-266-1984 and HL407E/HL407L human multiple myeloma cell lines.

Published in:

British Journal of Haematology, 1997, v. 98, n. 1, p. 126, doi. 10.1046/j.1365-2141.1997.1903004.x

By:

Spets, Helena;
Jernberg-Wiklund, Helena;
Sambade, Clara;
Söderberg, Ola;
Nilsson, Kenneth

Publication type:

Article

The method developer's guide to oligonucleotide design.

Published in:

Expert Review of Proteomics, 2024, v. 21, n. 1-3, p. 65, doi. 10.1080/14789450.2024.2318565

By:

Wenson, Leonie;
Leino, Mattias;
Jarvius, Malin;
Heldin, Johan;
Koos, Björn;
Söderberg, Ola

Publication type:

Article

PDGF-induced internalisation promotes proteolytic cleavage of PDGFRβ in mesenchymal cells.

Published in:

Growth Factors, 2024, v. 42, n. 4, p. 147, doi. 10.1080/08977194.2024.2413623

By:

Rubin Sander, Marie;
Tsiatsiou, Agni Karolina;
Wang, Kehuan;
Papadopoulos, Natalia;
Rorsman, Charlotte;
Olsson, Frida;
Heldin, Johan;
Söderberg, Ola;
Heldin, Carl-Henrik;
Lennartsson, Johan

Publication type:

Article

Author Correction: A method for Boolean analysis of protein interactions at a molecular level.

Published in:

2023

By:

Raykova, Doroteya;
Kermpatsou, Despoina;
Malmqvist, Tony;
Harrison, Philip J.;
Sander, Marie Rubin;
Stiller, Christiane;
Heldin, Johan;
Leino, Mattias;
Ricardo, Sara;
Klemm, Anna;
David, Leonor;
Spjuth, Ola;
Vemuri, Kalyani;
Dimberg, Anna;
Sundqvist, Anders;
Norlin, Maria;
Klaesson, Axel;
Kampf, Caroline;
Söderberg, Ola

Publication type:

Correction Notice

Proximity ligation assays: a recent addition to the proteomics toolbox.

Published in:

Expert Review of Proteomics, 2010, v. 7, n. 3, p. 401, doi. 10.1586/EPR.10.10

By:

Weibrecht, Irene;
Leuchowius, Karl-Johan;
Clausson, Carl-Magnus;
Conze, Tim;
Jarvius, Malin;
Howell, W. Mathias;
Kamali-Moghaddam, Masood;
Söderberg, Ola

Publication type:

Article

Prognostic but not predictive role of platelet-derived growth factor receptors in patients with recurrent glioblastoma.

Published in:

International Journal of Cancer, 2011, v. 128, n. 8, p. 1981, doi. 10.1002/ijc.25528

By:

Paulsson, Janna;
Lindh, Maja Bradic;
Jarvius, Malin;
Puputti, Marjut;
Nistér, Monica;
Nupponen, Nina N.;
Paulus, Werner;
Söderberg, Ola;
Dresemann, Gregor;
Von Deimling, Andreas;
Joensuu, Heikki;
Østman, Arne;
Hasselblatt, Martin

Publication type:

Article

Insufficient antibody validation challenges oestrogen receptor beta research.

Published in:

Nature Communications, 2017, v. 8, n. 6, p. 15840, doi. 10.1038/ncomms15840

By:

Andersson, Sandra;
Sundberg, Mårten;
Pristovsek, Nusa;
Ibrahim, Ahmed;
Jonsson, Philip;
Katona, Borbala;
Clausson, Carl-Magnus;
Zieba, Agata;
Ramström, Margareta;
Söderberg, Ola;
Williams, Cecilia;
Asplund, Anna

Publication type:

Article

Proximity-dependent initiation of hybridization chain reaction.

Published in:

Nature Communications, 2015, v. 6, n. 6, p. 7294, doi. 10.1038/ncomms8294

By:

Koos, Björn;
Cane, Gaëlle;
Grannas, Karin;
Löf, Liza;
Arngården, Linda;
Heldin, Johan;
Clausson, Carl-Magnus;
Klaesson, Axel;
Hirvonen, M. Karoliina;
de Oliveira, Felipe M. S.;
Talibov, Vladimir O.;
Pham, Nhan T.;
Auer, Manfred;
Danielson, U. Helena;
Haybaeck, Johannes;
Kamali-Moghaddam, Masood;
Söderberg, Ola

Publication type:

Article

Correction: WRAP53 Is Essential for Cajal Body Formation and for Targeting the Survival of Motor Neuron Complex to Cajal Bodies.

Published in:

2018

By:

Mahmoudi, Salah;
Henriksson, Sofia;
Weibrecht, Irene;
Smith, Stephen;
Söderberg, Ola;
Strömblad, Staffan;
Wiman, Klas G.;
Farnebo, Marianne

Publication type:

Correction Notice

Visualizing DNA single- and double-strand breaks in the Flash comet assay by DNA polymerase-assisted end-labelling.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. e22, doi. 10.1093/nar/gkae009

By:

Bivehed, Erik;
Hellman, Björn;
Wenson, Leonie;
Stenerlöw, Bo;
Söderberg, Ola;
Heldin, Johan

Publication type:

Article

Corrigendum: Insufficient antibody validation challenges oestrogen receptor beta research.

Published in:

Nature Communications, 2017, v. 8, n. 11, p. 16164, doi. 10.1038/ncomms16164

By:

Andersson, Sandra;
Sundberg, Mårten;
Pristovsek, Nusa;
Ibrahim, Ahmed;
Jonsson, Philip;
Katona, Borbala;
Clausson, Carl-Magnus;
Zieba, Agata;
Ramström, Margareta;
Söderberg, Ola;
Williams, Cecilia;
Asplund, Anna

Publication type:

Article

VEGF receptor 2/-3 heterodimers detected in situ by proximity ligation on angiogenic sprouts.

Published in:

EMBO Journal, 2010, v. 29, n. 8, p. 1377, doi. 10.1038/emboj.2010.30

By:

Nilsson, Ingrid;
Bahram, Fuad;
Xiujuan Li;
Gualandi, Laura;
Koch, Sina;
Jarvius, Malin;
Söderberg, Ola;
Anisimov, Andrey;
Kholová, Ivana;
Pytowski, Bronislaw;
Baldwin, Megan;
Ylä-Herttuala, Seppo;
Alitalo, Kari;
Kreuger, Johan;
Claesson-Welsh, Lena

Publication type:

Article

Increasing the dynamic range of in situ PLA.

Published in:

2011

By:

Clausson, Carl-Magnus;
Allalou, Amin;
Weibrecht, Irene;
Mahmoudi, Salah;
Farnebo, Marianne;
Landegren, Ulf;
Wählby, Carolina;
Söderberg, Ola

Publication type:

Letter

In situ detection and genotyping of individual mRNA molecules.

Published in:

Nature Methods, 2010, v. 7, n. 5, p. 395, doi. 10.1038/nmeth.1448

By:

Larsson, Chatarina;
Grundberg, Ida;
Söderberg, Ola;
Nilsson, Mats

Publication type:

Article

Direct observation of individual endogenous protein complexes in situ by proximity ligation.

Published in:

Nature Methods, 2006, v. 3, n. 12, p. 995, doi. 10.1038/nmeth947

By:

Söderberg, Ola;
Gullberg, Mats;
Jarvius, Malin;
Ridderstråle, Karin;
Leuchowius, Karl-Johan;
Jarvius, Jonas;
Wester, Kenneth;
Hydbring, Per;
Bahram, Fuad;
Larsson, Lars-Gunnar;
Landegren, Ulf

Publication type:

Article

c-Myc associates with ribosomal DNA and activates RNA polymerase I transcription.

Published in:

Nature Cell Biology, 2005, v. 7, n. 3, p. 303, doi. 10.1038/ncb1225

By:

Arabi, Azadeh;
Wu, Siqin;
Ridderstråle, Karin;
Bierhoff, Holger;
Shiue, Chiounan;
Fatyol, Karoly;
Fahlén, Sara;
Hydbring, Per;
Söderberg, Ola;
Grummt, Ingrid;
Larsson, Lars-Gunnar;
Wright, Anthony P. H.

Publication type:

Article

Fine-Tuning of Smad Protein Function by Poly(ADP-Ribose) Polymerases and Poly(ADP-Ribose) Glycohydrolase during Transforming Growth Factor β Signaling.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0103651

By:

Dahl, Markus;
Maturi, Varun;
Lönn, Peter;
Papoutsoglou, Panagiotis;
Zieba, Agata;
Vanlandewijck, Michael;
van der Heide, Lars P.;
Watanabe, Yukihide;
Söderberg, Ola;
Hottiger, Michael O.;
Heldin, Carl-Henrik;
Moustakas, Aristidis

Publication type:

Article

Association of the Protein-Tyrosine Phosphatase DEP-1 with Its Substrate FLT3 Visualized by <i>In Situ</i> Proximity Ligation Assay

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062871

By:

Böhmer, Sylvia-Annette;
Weibrecht, Irene;
Söderberg, Ola;
Böhmer, Frank-D.

Publication type:

Article

ADP-Ribosylation Factor 6 Mediates E-Cadherin Recovery by Chemical Chaperones.

Published in:

PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023188

By:

Figueiredo, Joana;
Simões-Correia, Joana;
Söderberg, Ola;
Suriano, Gianpaolo;
Seruca, Raquel

Publication type:

Article

Simultaneous Visualization of Both Signaling Cascade Activity and End-Point Gene Expression in Single Cells.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020148

By:

Weibrecht, Irene;
Grundberg, Ida;
Nilsson, Mats;
Söderberg, Ola

Publication type:

Article

Proximity ligation assays; Sensitive molecular tools for proteome analyses in neurodegenerative disorders

Published in:

2010

By:

Kamali-M., Masood;
Wu, Di;
Weibrecht, Irene;
Gu, Jijuan;
Yan, Junhong;
Darmanis, Spyros;
Söderberg, Ola

Publication type:

Abstract

P1-377: Sensitive detection of biomarkers of protein folding disorders: Proximity ligation-based detection of protein oligomers

Published in:

2008

By:

Kamali-M, Masood;
Englund, Hillevi;
Schallmeiner, Edith;
Pettersson, Frida Ekholm;
Darmanis, Spyros;
Söderberg, Ola;
Sehlin, Dag;
Lord, Anna;
Nilsson, Lars;
Lannfelt, Lars;
Landegren, Ulf

Publication type:

Abstract

P2-106: Proximity ligation-based detection of biomarkers of protein folding disorders

Published in:

2006

By:

Kamali-Moghaddam, Masood;
Englund, Hillevi;
Schallmeiner, Edith;
Ekholm Pettersson, Frida;
Söderberg, Ola;
Sehlin, Dag;
Lord, Anna;
Nilsson, Lars;
Lannfelt, Lars;
Landegren, Ulf

Publication type:

Abstract

P2-106: Proximity ligation-based detection of biomarkers of protein folding disorders

Published in:

2006

By:

Kamali-Moghaddam, Masood;
Englund, Hillevi;
Schallmeiner, Edith;
Ekholm Pettersson, Frida;
Söderberg, Ola;
Sehlin, Dag;
Lord, Anna;
Nilsson, Lars;
Lannfelt, Lars;
Landegren, Ulf

Publication type:

Abstract

Detecting individual extracellular vesicles using a multicolor in situ proximity ligation assay with flow cytometric readout.

Published in:

Scientific Reports, 2016, p. 34358, doi. 10.1038/srep34358

By:

Löf, Liza;
Ebai, Tonge;
Dubois, Louise;
Wik, Lotta;
Ronquist, K. Göran;
Nolander, Olivia;
Lundin, Emma;
Söderberg, Ola;
Landegren, Ulf;
Kamali-Moghaddam, Masood

Publication type:

Article

Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio.

Published in:

Scientific Reports, 2015, p. 12317, doi. 10.1038/srep12317

By:

Clausson, Carl-Magnus;
Arngården, Linda;
Klaesson, Axel;
Kühnemund, Malte;
Grannas, Karin;
Koos, Björn;
Söderberg, Ola;
Ishaq, Omer;
Ranefall, Petter;
Wählby, Carolina;
Qian, Xiaoyan;
Krzywkowski, Tomasz;
Brismar, Hjalmar;
Nilsson, Mats

Publication type:

Article

Functional interaction of DYX1C1 with estrogen receptors suggests involvement of hormonal pathways in dyslexia.

Published in:

Human Molecular Genetics, 2009, v. 18, n. 15, p. 2802, doi. 10.1093/hmg/ddp215

By:

Massinen, Satu;
Tammimies, Kristiina;
Tapia-Páez, Isabel;
Matsson, Hans;
Hokkanen, Marie-Estelle;
Söderberg, Ola;
Landegren, Ulf;
Castrén, Eero;
Gustafsson, Jan-Åke;
Treuter, Eckardt;
Kere, Juha

Publication type:

Article

P-cadherin functional role is dependent on E-cadherin cellular context: a proof of concept using the breast cancer model.

Published in:

Journal of Pathology, 2013, v. 229, n. 5, p. 705, doi. 10.1002/path.4143

By:

Ribeiro, Ana Sofia;
Sousa, Bárbara;
Carreto, Laura;
Mendes, Nuno;
Nobre, Ana Rita;
Ricardo, Sara;
Albergaria, André;
Cameselle‐Teijeiro, Jorge F;
Gerhard, Rene;
Söderberg, Ola;
Seruca, Raquel;
Santos, Manuel A;
Schmitt, Fernando;
Paredes, Joana

Publication type:

Article

Transcriptional profiling of human glioblastoma vessels indicates a key role of VEGF-A and TGFβ2 in vascular abnormalization Transcriptional profiling of human glioblastoma vessels indicates a key role of VEGF-A and TGFβ2 in vascular abnormalization†

Published in:

Journal of Pathology, 2012, v. 228, n. 3, p. 378, doi. 10.1002/path.4072

By:

Dieterich, Lothar C;
Mellberg, Sofie;
Langenkamp, Elise;
Zhang, Lei;
Zieba, Agata;
Salomäki, Henriikka;
Teichert, Martin;
Huang, Hua;
Edqvist, Per-Henrik;
Kraus, Theo;
Augustin, Hellmut G;
Olofsson, Tommie;
Larsson, Erik;
Söderberg, Ola;
Molema, Grietje;
Pontén, Fredrik;
Georgii-Hemming, Patrik;
Alafuzoff, Irina;
Dimberg, Anna

Publication type:

Article