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High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions.
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- Theoretical & Applied Genetics, 2024, v. 137, n. 7, p. 1, doi. 10.1007/s00122-024-04679-w
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- Article
Exploring the molecular regulation of vernalization‐induced flowering synchrony in Arabidopsis.
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- New Phytologist, 2024, v. 242, n. 3, p. 947, doi. 10.1111/nph.19680
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- Article
Improving predictive ability in sparse testing designs in soybean populations.
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- Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1269255
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Precipitation timing and soil substrate drive phenology and fitness of Arabidopsis thaliana in a Mediterranean environment.
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- Functional Ecology, 2023, v. 37, n. 9, p. 2471, doi. 10.1111/1365-2435.14391
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Mega-scale Bayesian regression methods for genome-wide prediction and association studies with thousands of traits.
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- Genetics, 2023, v. 223, n. 3, p. 1, doi. 10.1093/genetics/iyac183
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Multi-Trait Genomic Prediction Improves Accuracy of Selection among Doubled Haploid Lines in Maize.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 14558, doi. 10.3390/ijms232314558
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Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize.
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- Molecular Biology & Evolution, 2022, v. 39, n. 11, p. 1, doi. 10.1093/molbev/msac239
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- Article
Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species.
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- Genetics, 2022, v. 222, n. 2, p. 1, doi. 10.1093/genetics/iyac122
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- Article
Demonstration of local adaptation in maize landraces by reciprocal transplantation.
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- Evolutionary Applications, 2022, v. 15, n. 5, p. 817, doi. 10.1111/eva.13372
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Analysis of genotype-by-environment interactions in a maize mapping population.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 3, p. 1, doi. 10.1093/g3journal/jkac013
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- Article
Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 3, p. 1, doi. 10.1093/g3journal/jkac011
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Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations.
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- Theoretical & Applied Genetics, 2021, v. 134, n. 12, p. 4043, doi. 10.1007/s00122-021-03946-4
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- Article
Multi-trait genomic-enabled prediction enhances accuracy in multi-year wheat breeding trials.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 10, p. 1, doi. 10.1093/g3journal/jkab270
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MegaLMM: Mega-scale linear mixed models for genomic predictions with thousands of traits.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02416-w
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Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 3, p. 1, doi. 10.1093/g3journal/jkab015
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- Article
Implications of genetic heterogeneity for plant translocation during ecological restoration.
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- Ecology & Evolution (20457758), 2021, v. 11, n. 3, p. 1100, doi. 10.1002/ece3.6978
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- Article
Gene regulatory effects of a large chromosomal inversion in highland maize.
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- PLoS Genetics, 2020, v. 16, n. 12, p. 1, doi. 10.1371/journal.pgen.1009213
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Multiple Loci Control Variation in Plasticity to Foliar Shade Throughout Development in Arabidopsis thaliana.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 11, p. 4103, doi. 10.1534/g3.120.401259
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Floral signals evolve in a predictable way under artificial and pollinator selection in Brassica rapa.
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- BMC Evolutionary Biology, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12862-020-01692-7
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- Article
Translational regulation contributes to the elevated CO<sub>2</sub> response in two Solanum species.
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- Plant Journal, 2020, v. 102, n. 2, p. 383, doi. 10.1111/tpj.14632
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Pitfalls and Remedies for Cross Validation with Multi-trait Genomic Prediction Methods.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 11, p. 3727, doi. 10.1534/g3.119.400598
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Fast and flexible linear mixed models for genome-wide genetics.
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- PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007978
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Uneven Distribution of Mutational Variance Across the Transcriptome of Drosophila serrata Revealed by High-Dimensional Analysis of Gene Expression.
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- Genetics, 2018, v. 209, n. 4, p. 1319, doi. 10.1534/genetics.118.300757
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Genomic Characterization of the Evolutionary Potential of the Sea Urchin Strongylocentrotus droebachiensis Facing Ocean Acidification.
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- Genome Biology & Evolution, 2016, v. 8, n. 12, p. 3672, doi. 10.1093/gbe/evw272
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The joint influence of photoperiod and temperature during growth cessation and development of dormancy in white spruce (Picea glauca).
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- Tree Physiology, 2016, v. 36, n. 11, p. 1432, doi. 10.1093/treephys/tpw061
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Fluctuating, warm temperatures decrease the effect of a key floral repressor on flowering time in Arabidopsis thaliana.
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- New Phytologist, 2016, v. 210, n. 2, p. 564, doi. 10.1111/nph.13799
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The Impact of Gene Expression Variation on the Robustness and Evolvability of a Developmental Gene Regulatory Network.
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- PLoS Biology, 2013, v. 11, n. 10, p. 1, doi. 10.1371/journal.pbio.1001696
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Dissecting High-Dimensional Phenotypes with Bayesian Sparse Factor Analysis of Genetic Covariance Matrices.
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- Genetics, 2013, v. 194, n. 3, p. 753, doi. 10.1534/genetics.113.151217
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Genetics of gene expression responses to temperature stress in a sea urchin gene network.
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- Molecular Ecology, 2012, v. 21, n. 18, p. 4547, doi. 10.1111/j.1365-294X.2012.05717.x
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Sequence signatures of a recent chromosomal rearrangement in Drosophila mojavensis.
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- Genetica, 2009, v. 136, n. 1, p. 5, doi. 10.1007/s10709-008-9296-0
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- Article