Works by Ruijter, Jan M

Results: 36

Gene regulatory elements of the cardiac conduction system.

Published in:

Briefings in Functional Genomics, 2014, v. 13, n. 1, p. 28, doi. 10.1093/bfgp/elt031

By:

van Duijvenboden, Karel;
Ruijter, Jan M.;
Christoffels, Vincent M.

Publication type:

Article

Disclosing quantitative RT‐PCR raw data during manuscript submission: a call for action.

Published in:

Molecular Oncology, 2023, v. 17, n. 5, p. 713, doi. 10.1002/1878-0261.13418

By:

Untergasser, Andreas;
Hellemans, Jan;
Pfaffl, Michael W.;
Ruijter, Jan M.;
van den Hoff, Maurice J. B.;
Dragomir, Mihnea P.;
Adamoski, Douglas;
Dias, Sandra Martha Gomes;
Reis, Rui Manuel;
Ferracin, Manuela;
Dias‐Neto, Emmanuel;
Marsh, Ian;
Kubista, Mikael;
Fabbri, Muller;
Goel, Ajay;
Slabý, Ondřej;
Knutsen, Erik;
Chen, Baoqing;
Negrini, Massimo;
Mimori, Koshi

Publication type:

Article

Serial Noninvasive Assessment of Apoptosis During Right Ventricular Disease Progression in Rats.

Published in:

Journal of Nuclear Medicine, 2009, v. 50, n. 8, p. 1371, doi. 10.2967/jnumed.108.061366

By:

Campian, Maria E.;
Verberne, Hein J.;
Hardziyenka, Maxim;
de Bruin, Kora;
Selwaness, Mariana;
den Hoff, Maurice J. B. van;
Ruijter, Jan M.;
van Eck-Smit, Berthe L. F.;
De Bakker, Jacques M. T.;
Tan, Hanno L.

Publication type:

Article

More than a decade of developmental gene expression atlases: where are we now?

Published in:

Nucleic Acids Research, 2010, v. 38, n. 9, p. 3147, doi. 10.1093/nar/gkq070

By:

de Boer, Bouke A.;
Ruijter, Jan M.;
Voorbraak, Frans P. J. M.;
Moorman, Antoon F. M.

Publication type:

Article

More than a decade of developmental gene expression atlases: where are we now?

Published in:

Nucleic Acids Research, 2009, v. 37, n. 22, p. 7349, doi. 10.1093/nar/gkp819

By:

de Boer, Bouke A.;
Ruijter, Jan M.;
Voorbraak, Frans P. J. M.;
Moorman, Antoon F. M.

Publication type:

Article

Web‑based LinRegPCR: application for the visualization and analysis of (RT)‑qPCR amplification and melting data.

Published in:

BMC Bioinformatics, 2021, v. 22, p. 1, doi. 10.1186/s12859-021-04306-1

By:

Untergasser, Andreas;
Ruijter, Jan M.;
Benes, Vladimir;
van den Hof, Maurice J. B.

Publication type:

Article

Fever-induced QTc prolongation and ventricular arrhythmias in individuals with type 2 congenital long QT syndrome.

Published in:

2008

By:

Amin, Ahmad S.;
Herfst, Lucas J.;
Delisle, Brian P.;
Klemens, Christine A.;
Rook, Martin B.;
Bezzina, Connie R.;
Underkofler, Heather A.S.;
Holzem, Katherine M.;
Ruijter, Jan M.;
Tan, Hanno L.;
January, Craig T.;
Wilde, Arthur A.M.

Publication type:

journal article

Use and Misuse of C q in qPCR Data Analysis and Reporting.

Published in:

Life (2075-1729), 2021, v. 11, n. 6, p. 496, doi. 10.3390/life11060496

By:

Ruiz-Villalba, Adrián;
Ruijter, Jan M.;
van den Hoff, Maurice J. B.

Publication type:

Article

MEASUREMENT OF THE SHORTEST PATH LENGTH; DISTANCE ESTIMATION WITHIN THE 3D BORDERS OF A TISSUE OF INTEREST.

Published in:

Image Analysis & Stereology, 2010, v. 29, n. 1, p. 53

By:

De Boer, Bouke A.;
Voorbraak, Frans P. J. M.;
Van Den Berg, Gert;
Ruijter, Jan M.

Publication type:

Article

Glutamine synthetase deficiency in murine astrocytes results in neonatal death.

Published in:

Glia (0894-1491), 2010, v. 58, n. 6, p. 741, doi. 10.1002/glia.20960

By:

He, Youji;
Hakvoort, Theodorus B. M.;
Vermeulen, Jacqueline L. M.;
Labruyère, Wilhelmina T.;
De Waart, D. Rudi;
Van Der Hel, W. Saskia;
Ruijter, Jan M.;
Uylings, Harry B. M.;
Lamers, Wouter H.

Publication type:

Article

Increased tumour risk for BWS patients correlates with aberrant H19 and not KCNQ1OT1 methylation: occurrence of KCNQ1OT1 hypomethylation in familial cases of BWS.

Published in:

Human Molecular Genetics, 2001, v. 10, n. 5, p. 467, doi. 10.1093/hmg/10.5.467

By:

Bliek, Jet;
Maas, Saskia M.;
Ruijter, Jan M.;
Hennekam, Raoul C.M.;
Alders, Marielle;
Westerveld, Andries;
Mannens, Marcel M.A.M.

Publication type:

Article

Tubulin polymerization modifies cardiac sodium channel expression and gating.

Published in:

Cardiovascular Research, 2010, v. 85, n. 4, p. 691, doi. 10.1093/cvr/cvp352

By:

Casini, Simona;
Tan, Hanno L.;
Demirayak, Ilker;
Remme, Carol Ann;
Amin, Ahmad S.;
Scicluna, Brendon P.;
Chatyan, Houssine;
Ruijter, Jan M.;
Bezzina, Connie R.;
van Ginneken, Antoni C. G.;
Veldkamp, Marieke W.

Publication type:

Article

Msx1 and Msx2 are functional interacting partners of T-box factors in the regulation of Connexin43.

Published in:

Cardiovascular Research, 2008, v. 78, n. 3, p. 485, doi. 10.1093/cvr/cvn049

By:

Boogerd, Kees-Jan;
Wong, L. Y. Elaine;
Christoffels, Vincent M.;
Klarenbeek, Meinke;
Ruijter, Jan M.;
Moorman, Antoon F. M.;
Barnett, Phil

Publication type:

Article

Cardiomyocytes derived from embryonic stem cells resemble cardiomyocytes of the embryonic heart tube

Published in:

Cardiovascular Research, 2003, v. 58, n. 2, p. 399, doi. 10.1016/S0008-6363(03)00282-7

By:

Fijnvandraat, Arnoud C.;
van Ginneken, Antoni C.G.;
de Boer, Piet A.J.;
Ruijter, Jan M.;
Christoffels, Vincent M.;
Moorman, Antoon F.M.;
Lekanne Deprez, Ronald H.

Publication type:

Article

Facilitatory and inhibitory effects of SCN5A mutations on atrial fibrillation in Brugada syndrome.

Published in:

EP: Europace, 2011, v. 13, n. 7, p. 968, doi. 10.1093/europace/eur011

By:

Amin, Ahmad S.;
Boink, Gerard J. J.;
Atrafi, Florence;
Spanjaart, Anne M.;
Asghari-Roodsari, Alaleh;
Molenaar, Remco J.;
Ruijter, Jan M.;
Wilde, Arthur A. M.;
Tan, Hanno L.

Publication type:

Article

Dentofacial characteristics of patients with hypodontia.

Published in:

Clinical Oral Investigations, 2010, v. 14, n. 4, p. 467, doi. 10.1007/s00784-009-0308-y

By:

Créton, Marijn;
Cune, Marco S.;
de Putter, Cornelis;
Ruijter, Jan M.;
Kuijpers-Jagtman, Anne Marie

Publication type:

Article

Diagnostic Value of Flecainide Testing in Unmasking SCN5A-Related Brugada Syndrome.

Published in:

Journal of Cardiovascular Electrophysiology, 2006, v. 17, n. 8, p. 857, doi. 10.1111/j.1540-8167.2006.00531.x

By:

MEREGALLI, PAOLA G.;
RUIJTER, JAN M.;
HOFMAN, NYNKE;
BEZZINA, CONNIE R.;
WILDE, ARTHUR A.M.;
TAN, HANNO L.

Publication type:

Article

RDML-Ninja and RDMLdb for standardized exchange of qPCR data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0637-6

By:

Ruijter, Jan M.;
Lefever, Steve;
Anckaert, Jasper;
Hellemans, Jan;
Pfaffl, Michael W.;
Benes, Vladimir;
Bustin, Stephen A.;
Vandesompele, Jo;
Untergasser, Andreas

Publication type:

Article

Retinal Degeneration and Ionizing Radiation Hypersensitivity in a Mouse Model for Cockayne Syndrome.

Published in:

Molecular & Cellular Biology, 2007, v. 27, n. 4, p. 21, doi. 10.1128/MCB.01037-06

By:

Gorgels, Theo G. M. F.;
Van der Pluijm, Ingrid;
Brandt, Renata M. C.;
Garinis, George A.;
Van Steeg, Harry;
Van den Aardweg, Gerard;
Jansen, Gerard H.;
Ruijter, Jan M.;
Bergen, Arthur A. B.;
Van Norren, Dirk;
Hoeijmakers, Jan H. J.;
Van der Horst, Gijsbertus T. J.

Publication type:

Article

Considerations for Measurement of Embryonic Organ Growth.

Published in:

Anatomical Record: Advances in Integrative Anatomy & Evolutionary Biology, 2019, v. 302, n. 1, p. 49, doi. 10.1002/ar.23908

By:

Prakash, Stuti;
Boer, Bouke A.;
Hagoort, Jaco;
Gunst, Quinn D.;
Ruijter, Jan M.;
Hoff, Maurice J. B.

Publication type:

Article

Cellular concentrations of glutamine synthetase in murine organs.

Published in:

Biochemistry & Cell Biology, 2006, v. 84, n. 2, p. 215, doi. 10.1139/O05-170

By:

Van Straaten, Henny W. M.;
Youji He;
Van Duist, Marjan M.;
Labruyère, Wil T.;
Vermeulen, Jacqueline L. M.;
Van Dijk, Paul J.;
Ruijter, Jan M.;
Lamers, Wouter H.;
Hakvoort, Theodorus B. M.

Publication type:

Article

MIQE 2.0: Revision of the Minimum Information for Publication of Quantitative Real-Time PCR Experiments Guidelines Free.

Published in:

Clinical Chemistry, 2025, v. 71, n. 6, p. 634, doi. 10.1093/clinchem/hvaf043

By:

Bustin, Stephen A;
Ruijter, Jan M;
Hoff, Maurice J B van den;
Kubista, Mikael;
Pfaffl, Michael W;
Shipley, Gregory L;
Tran, Nham;
Rödiger, Stefan;
Untergasser, Andreas;
Mueller, Reinhold;
Nolan, Tania;
Milavec, Mojca;
Burns, Malcolm J;
Huggett, Jim F;
Vandesompele, Jo;
Wittwer, Carl T

Publication type:

Article

Efficiency Correction Is Required for Accurate Quantitative PCR Analysis and Reporting.

Published in:

Clinical Chemistry, 2021, v. 67, n. 6, p. 829, doi. 10.1093/clinchem/hvab052

By:

Ruijter, Jan M.;
Barnewall, Rebecca J.;
Marsh, Ian B.;
Szentirmay, Andrew N.;
Quinn, Jane C.;
van Houdt, Robin;
Gunst, Quinn D.;
van den Hoff, Maurice J. B.

Publication type:

Article

Study Design and qPCR Data Analysis Guidelines for Reliable Circulating miRNA Biomarker Experiments: A Review.

Published in:

Clinical Chemistry, 2018, v. 64, n. 9, p. 1308, doi. 10.1373/clinchem.2017.285288

By:

de Ronde, Maurice W. J.;
Ruijter, Jan M.;
Moerland, Perry D.;
Creemers, Esther E.;
Pinto-Sietsma, Sara-Joan

Publication type:

Article

EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1144

By:

van Duijvenboden, Karel;
de Boer, Bouke A.;
Capon, Nicolas;
Ruijter, Jan M.;
Christoffels, Vincent M.

Publication type:

Article

Bone Structure Changes in Iliac Crest Grafts Combined with Implants Clinical Implant Dentistry and Related Research, Volume , Number , 2009 Bone Structure Changes in Iliac Crest Grafts.

Published in:

Clinical Implant Dentistry & Related Research, 2010, v. 12, n. 4, p. 289, doi. 10.1111/j.1708-8208.2009.00169.x

By:

Verhoeven, Jan Willem;
Ruijter, Jan M.;
Koole, Ronald;
De Putter, Cornelis;
Cune, Marco S.

Publication type:

Article

Removal of artifact bias from qPCR results using DNA melting curve analysis.

Published in:

FASEB Journal, 2019, v. 33, n. 12, p. 14542, doi. 10.1096/fj.201901604R

By:

Ruijter, Jan M.;
Ruiz-Villalba, Adrian;
van den Hoff, Axel J. J.;
Gunst, Quinn D.;
Wittwer, Carl T.;
van den Hoff, Maurice J. B.

Publication type:

Article

Full transcriptome analysis of rhabdomyosarcoma, normal, and fetal skeletal muscle: statistical comparison of multiple SAGE libraries.

Published in:

FASEB Journal, 2005, v. 19, n. 3, p. 404, doi. 10.1096/fj.04-2104fje

By:

Schaaf, Gerben J.;
Ruijter, Jan M.;
Van Ruissen, Fred;
Benit-Deekman, Jennifer;
Baas, Frank;
Zwijnenburg, Danny A.;
Kool, Marcel;
Waaijer, Raymond;
Van Kampen, Antoine H. C.;
Valentijn, Linda J.

Publication type:

Article

Interfering With DNA Decondensation as a Strategy Against Mycobacteria.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.02034

By:

Scutigliani, Enzo M.;
Scholl, Edwin R.;
Grootemaat, Anita E.;
Khanal, Sadhana;
Kochan, Jakub A.;
Krawczyk, Przemek M.;
Reits, Eric A.;
Garzan, Atefeh;
Ngo, Huy X.;
Green, Keith D.;
Garneau-Tsodikova, Sylvie;
Ruijter, Jan M.;
van Veen, Henk A.;
van der Wel, Nicole N.

Publication type:

Article

OccuPeak: ChIP-Seq Peak Calling Based on Internal Background Modelling.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099844

By:

de Boer, Bouke A.;
van Duijvenboden, Karel;
van den Boogaard, Malou;
Christoffels, Vincent M.;
Barnett, Phil;
Ruijter, Jan M.

Publication type:

Article

Cardiomyocyte-Specific miRNA-30c Over-Expression Causes Dilated Cardiomyopathy.

Published in:

PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096290

By:

Wijnen, Wino J.;
van der Made, Ingeborg;
van den Oever, Stephanie;
Hiller, Monika;
de Boer, Bouke A.;
Picavet, Daisy I.;
Chatzispyrou, Iliana A.;
Houtkooper, Riekelt H.;
Tijsen, Anke J.;
Hagoort, Jaco;
van Veen, Henk;
Everts, Vincent;
Ruijter, Jan M.;
Pinto, Yigal M.;
Creemers, Esther E.

Publication type:

Article

Measurement and 3D-Visualization of Cell-Cycle Length Using Double Labelling with Two Thymidine Analogues Applied in Early Heart Development.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047719

By:

de Boer, Bouke A.;
van den Berg, Gert;
Soufan, Alexandre T.;
de Boer, Piet A. J.;
Hagoort, Jaco;
van den Hoff, Maurice J. B.;
Moorman, Antoon F. M.;
Ruijter, Jan M.

Publication type:

Article

Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology.

Published in:

Retrovirology, 2006, v. 3, p. 2, doi. 10.1186/1742-4690-3-2

By:

Ruijter, Jan M.;
Thygesen, Helene H.;
Schoneveld, Onard J. L. M.;
Das, Atze T.;
Berkhout, Ben;
Lamers, Wouter H.

Publication type:

Article

Densitometric measurements of the mandible: accuracy and validity of intraoral versus extraoral radiographical techniques in an in vitro study.

Published in:

Clinical Oral Implants Research (Wiley-Blackwell), 1998, v. 9, n. 5, p. 333, doi. 10.1034/j.1600-0501.1998.090507.x

By:

Verhoeven, Jan W.;
Ruijter, Jan M.;
Cune, Marco S.;
de Putter, Cornelis

Publication type:

Article

The effect of repeated freeze-thaw cycles on human muscle tissue visualized by postmortem computed tomography (PMCT).

Published in:

Clinical Anatomy, 2017, v. 30, n. 6, p. 799, doi. 10.1002/ca.22917

By:

Klop, Anthony C.;
Vester, Marloes E.M.;
Colman, Kerri L.;
Ruijter, Jan M.;
Van Rijn, Rick R.;
Oostra, Roelof‐Jan

Publication type:

Article

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips.

Published in:

BMC Genomics, 2005, v. 6, p. 91, doi. 10.1186/1471-2164-6-91

By:

van Ruissen, Fred;
Ruijter, Jan M;
Schaaf, Gerben J;
Asgharnegad, Lida;
Zwijnenburg, Danny A;
Kool, Marcel;
Baas, Frank

Publication type:

Article