Works by Rubinstein, Nimrod D.

Results: 19

The Tug1 lncRNA locus is essential for male fertility.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02081-5

By:

Lewandowski, Jordan P.;
Dumbović, Gabrijela;
Watson, Audrey R.;
Hwang, Taeyoung;
Jacobs-Palmer, Emily;
Chang, Nydia;
Much, Christian;
Turner, Kyle M.;
Kirby, Christopher;
Rubinstein, Nimrod D.;
Groff, Abigail F.;
Liapis, Steve C.;
Gerhardinger, Chiara;
Bester, Assaf;
Pandolfi, Pier Paolo;
Clohessy, John G.;
Hoekstra, Hopi E.;
Sauvageau, Martin;
Rinn, John L.

Publication type:

Article

Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 1, p. 69, doi. 10.1093/nar/gkl975

By:

Mayrose, Itay;
Shlomi, Tomer;
Rubinstein, Nimrod D.;
Gershoni, Jonathan M.;
Ruppin, Eytan;
Sharan, Roded;
Pupko, Tal

Publication type:

Article

Pepitope: epitope mapping from affinity-selected peptides.

Published in:

Bioinformatics, 2007, v. 23, n. 23, p. 3244, doi. 10.1093/bioinformatics/btm493

By:

Itay Mayrose;
Osnat Penn;
Elana Erez;
Nimrod D. Rubinstein;
Tomer Shlomi;
Natalia Tarnovitski Freund;
Erez M. Bublil;
Eytan Ruppin;
Roded Sharan;
Jonathan M. Gershoni;
Eric Martz;
Tal Pupko

Publication type:

Article

Deep Sequencing of Mixed Total DNA without Barcodes Allows Efficient Assembly of Highly Plastic Ascidian Mitochondrial Genomes.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 6, p. 1185, doi. 10.1093/gbe/evt081

By:

Rubinstein, Nimrod D.;
Feldstein, Tamar;
Shenkar, Noa;
Botero-Castro, Fidel;
Griggio, Francesca;
Mastrototaro, Francesco;
Delsuc, Frédéric;
Douzery, Emmanuel J.P.;
Gissi, Carmela;
Huchon, Dorothée

Publication type:

Article

Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity.

Published in:

PLoS Biology, 2019, v. 17, n. 11, p. 1, doi. 10.1371/journal.pbio.3000528

By:

Hilton, Hugo G.;
Rubinstein, Nimrod D.;
Janki, Peter;
Ireland, Andrea T.;
Bernstein, Nicholas;
Fong, Nicole L.;
Wright, Kevin M.;
Smith, Megan;
Finkle, David;
Martin-McNulty, Baby;
Roy, Margaret;
Imai, Denise M.;
Jojic, Vladimir;
Buffenstein, Rochelle

Publication type:

Article

Urocortin-3 neurons in the mouse perifornical area promote infant-directed neglect and aggression.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.64680

By:

Autry, Anita E.;
Zheng Wu;
Kapoor, Vikrant;
Kohl, Johannes;
Bambah-Mukku, Dhananjay;
Rubinstein, Nimrod D.;
Marin-Rodriguez, Brenda;
Carta, Ilaria;
Sedwick, Victoria;
Ming Tang;
Dulac, Catherine

Publication type:

Article

Benign and tumor parenchyma metabolomic profiles affect compensatory renal growth in renal cell carcinoma surgical patients.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180350

By:

Rosenzweig, Barak;
Rubinstein, Nimrod D.;
Reznik, Ed;
Shingarev, Roman;
Juluru, Krishna;
Akin, Oguz;
Hsieh, James J.;
Jaimes, Edgar A.;
Russo, Paul;
Susztak, Katalin;
Coleman, Jonathan A.;
Hakimi, A. Ari

Publication type:

Article

The Multipartite Mitochondrial Genome of Enteromyxum leei (Myxozoa): Eight Fast-Evolving Megacircles.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 7, p. 1551, doi. 10.1093/molbev/msx072

By:

Yahalomi, Dayana;
Haddas-Sasson, Michal;
Rubinstein, Nimrod D.;
Feldstein, Tamar;
Diamant, Arik;
Huchon, Dorothée

Publication type:

Article

Evolutionary Models Accounting for Layers of Selection in Protein-Coding Genes and their Impact on the Inference of Positive Selection.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 12, p. 3297, doi. 10.1093/molbev/msr162

By:

Rubinstein, Nimrod D.;
Doron-Faigenboim, Adi;
Mayrose, Itay;
Pupko, Tal

Publication type:

Article

The Operonic Location of Auto-transcriptional Repressors Is Highly Conserved in Bacteria.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 12, p. 3309, doi. 10.1093/molbev/msr163

By:

Rubinstein, Nimrod D.;
Zeevi, David;
Oren, Yaara;
Segal, Gil;
Pupko, Tal

Publication type:

Article

Evolution of T cells in the cancer-resistant naked mole-rat.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47264-x

By:

Lin, Tzuhua D.;
Rubinstein, Nimrod D.;
Fong, Nicole L.;
Smith, Megan;
Craft, Wendy;
Martin-McNulty, Baby;
Perry, Rebecca;
Delaney, Martha A.;
Roy, Margaret A.;
Buffenstein, Rochelle

Publication type:

Article

Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm.

Published in:

Proteins, 2007, v. 68, n. 1, p. 294, doi. 10.1002/prot.21387

By:

Bublil, Erez M.;
Freund, Natalia Tarnovitski;
Mayrose, Itay;
Penn, Osnat;
Roitburd-Berman, Anna;
Rubinstein, Nimrod D.;
Pupko, Tal;
Gershoni, Jonathan M.

Publication type:

Article

Correction to: A window into extreme longevity; the circulating metabolomic signature of the naked mole-rat, a mammal that shows negligible senescence.

Published in:

GeroScience, 2018, v. 40, n. 3, p. 357, doi. 10.1007/s11357-018-0023-1

By:

Lewis, Kaitlyn N.;
Rubinstein, Nimrod D.;
Buffenstein, Rochelle

Publication type:

Article

A window into extreme longevity; the circulating metabolomic signature of the naked mole-rat, a mammal that shows negligible senescence.

Published in:

GeroScience, 2018, v. 40, n. 2, p. 105, doi. 10.1007/s11357-018-0014-2

By:

Lewis, Kaitlyn N.;
Rubinstein, Nimrod D.;
Buffenstein, Rochelle

Publication type:

Article

Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes.

Published in:

PLoS Computational Biology, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000214

By:

Penn, Osnat;
Stern, Adi;
Rubinstein, Nimrod D.;
Dutheil, Julien;
Bacharach, Eran;
Galtier, Nicolas;
Pupko, Tal

Publication type:

Article

Transitions in paternal social status predict patterns of offspring growth and metabolic transcription.

Published in:

Molecular Ecology, 2020, v. 29, n. 3, p. 624, doi. 10.1111/mec.15346

By:

Cauceglia, Joseph W.;
Nelson, Adam C.;
Rubinstein, Nimrod D.;
Kukreja, Shweta;
Sasso, Lynsey N.;
Beaufort, John A.;
Rando, Oliver J.;
Potts, Wayne K.

Publication type:

Article

Regulation of alternative splicing at the single-cell level.

Published in:

Molecular Systems Biology, 2015, v. 11, n. 12, p. n/a, doi. 10.15252/msb.20156278

By:

Faigenbloom, Lior;
Rubinstein, Nimrod D;
Kloog, Yoel;
Mayrose, Itay;
Pupko, Tal;
Stein, Reuven

Publication type:

Article

eIF2B activator prevents neurological defects caused by a chronic integrated stress response.

Published in:

eLife, 2019, p. 1, doi. 10.7554/eLife.42940

By:

Yao Liang Wong;
LeBon, Lauren;
Basso, Ana M.;
Kohlhaas, Kathy L.;
Nikkel, Arthur L.;
Robb, Holly M.;
Donnelly-Roberts, Diana L.;
Prakash, Janani;
Swensen, Andrew M.;
Rubinstein, Nimrod D.;
Krishnan, Swathi;
McAllister, Fiona E.;
Haste, Nicole V.;
O’Brien, Jonathon J.;
Roy, Margaret;
Ireland, Andrea;
Frost, Jennifer M.;
Lei Shi;
Riedmaier, Stephan;
Martin, Kathleen

Publication type:

Article

Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain.

Published in:

eLife, 2015, p. 1, doi. 10.7554/eLife.07860

By:

Perez, Julio D.;
Rubinstein, Nimrod D.;
Fernandez, Daniel E.;
Santoro, Stephen W.;
Needleman, Leigh A.;
Ho-Shing, Olivia;
Choi, John J.;
Zirlinger, Mariela;
Shau-Kwau nChen;
Jun S. Liu;
Dulac, Catherine

Publication type:

Article