Works by Rubin, Edward M.


Results: 66
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    ChIP-seq accurately predicts tissue-specific activity of enhancers.

    Published in:
    Nature, 2009, v. 457, n. 7231, p. 854, doi. 10.1038/nature07730
    By:
    • Visel, Axel;
    • Blow, Matthew J.;
    • Li, Zirong;
    • Zhang, Tao;
    • Akiyama, Jennifer A.;
    • Holt, Amy;
    • Plajzer-Frick, Ingrid;
    • Shoukry, Malak;
    • Wright, Crystal;
    • Chen, Feng;
    • Afzal, Veena;
    • Ren, Bing;
    • Rubin, Edward M.;
    • Pennacchio, Len A.
    Publication type:
    Article
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    In vivo enhancer analysis of human conserved non-coding sequences.

    Published in:
    Nature, 2006, v. 444, n. 7118, p. 499, doi. 10.1038/nature05295
    By:
    • Pennacchio, Len A.;
    • Ahituv, Nadav;
    • Moses, Alan M.;
    • Prabhakar, Shyam;
    • Nobrega, Marcelo A.;
    • Shoukry, Malak;
    • Minovitsky, Simon;
    • Dubchak, Inna;
    • Holt, Amy;
    • Lewis, Keith D.;
    • Plajzer-Frick, Ingrid;
    • Akiyama, Jennifer;
    • De Val, Sarah;
    • Afzal, Veena;
    • Black, Brian L.;
    • Couronne, Olivier;
    • Eisen, Michael B.;
    • Visel, Axel;
    • Rubin, Edward M.
    Publication type:
    Article
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    Symbiosis insights through metagenomic analysis of a microbial consortium.

    Published in:
    Nature, 2006, v. 443, n. 7114, p. 950, doi. 10.1038/nature05192
    By:
    • Woyke, Tanja;
    • Teeling, Hanno;
    • Ivanova, Natalia N.;
    • Huntemann, Marcel;
    • Richter, Michael;
    • Gloeckner, Frank Oliver;
    • Boffelli, Dario;
    • Anderson, Iain J.;
    • Barry, Kerrie W.;
    • Shapiro, Harris J.;
    • Szeto, Ernest;
    • Kyrpides, Nikos C.;
    • Mussmann, Marc;
    • Amann, Rudolf;
    • Bergin, Claudia;
    • Ruehland, Caroline;
    • Rubin, Edward M.;
    • Dubilier, Nicole
    Publication type:
    Article
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    Large-scale discovery of enhancers from human heart tissue.

    Published in:
    Nature Genetics, 2012, v. 44, n. 1, p. 89, doi. 10.1038/ng.1006
    By:
    • May, Dalit;
    • Blow, Matthew J;
    • Kaplan, Tommy;
    • McCulley, David J;
    • Jensen, Brian C;
    • Akiyama, Jennifer A;
    • Holt, Amy;
    • Plajzer-Frick, Ingrid;
    • Shoukry, Malak;
    • Wright, Crystal;
    • Afzal, Veena;
    • Simpson, Paul C;
    • Rubin, Edward M;
    • Black, Brian L;
    • Bristow, James;
    • Pennacchio, Len A;
    • Visel, Axel
    Publication type:
    Article
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    ChIP-Seq identification of weakly conserved heart enhancers.

    Published in:
    Nature Genetics, 2010, v. 42, n. 9, p. 806, doi. 10.1038/ng.650
    By:
    • Blow, Matthew J.;
    • McCulley, David J.;
    • Zirong Li;
    • Tao Zhang;
    • Akiyama, Jennifer A.;
    • Holt, Amy;
    • Plajzer-Frick, Ingrid;
    • Shoukry, Malak;
    • Wright, Crystal;
    • Feng Chen;
    • Afzal, Veena;
    • Bristow, James;
    • Bing Ren;
    • Black, Brian L.;
    • Rubin, Edward M.;
    • Visel, Axel;
    • Pennacchio, Len A.
    Publication type:
    Article
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    Coronavirus surveillance of wildlife in the Lao People's Democratic Republic detects viral RNA in rodents.

    Published in:
    Archives of Virology, 2020, v. 165, n. 8, p. 1869, doi. 10.1007/s00705-020-04683-7
    By:
    • McIver, David J.;
    • Silithammavong, Soubanh;
    • Theppangna, Watthana;
    • Gillis, Amethyst;
    • Douangngeun, Bounlom;
    • Khammavong, Kongsy;
    • Singhalath, Sinpakone;
    • Duong, Veasna;
    • Buchy, Philippe;
    • Olson, Sarah H.;
    • Keatts, Lucy;
    • Fine, Amanda E.;
    • Greatorex, Zoe;
    • Gilbert, Martin;
    • LeBreton, Matthew;
    • Saylors, Karen;
    • Joly, Damien O.;
    • Rubin, Edward M.;
    • Lange, Christian E.
    Publication type:
    Article
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    DNA of diverse adenoviruses detected in Cameroonian rodent and shrew species.

    Published in:
    Archives of Virology, 2019, v. 164, n. 9, p. 2359, doi. 10.1007/s00705-019-04323-9
    By:
    • Diffo, Joseph;
    • Ndze, Valantine Ngum;
    • Ntumvi, Nkom Felix;
    • Takuo, Jean-Michel;
    • Mouiche, Moctar M. M.;
    • Tamoufe, Ubald;
    • Nwobegahay, Julius;
    • LeBreton, Matthew;
    • Gillis, Amethyst;
    • Schneider, Bradley S.;
    • Fair, Joseph M.;
    • Monagin, Corina;
    • McIver, David J.;
    • Joly, Damien O.;
    • Wolfe, Nathan D.;
    • Rubin, Edward M.;
    • Lange, Christian E.
    Publication type:
    Article
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    The Epigenomic Landscape of Prokaryotes.

    Published in:
    PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005854
    By:
    • Blow, Matthew J.;
    • Clark, Tyson A.;
    • Daum, Chris G.;
    • Deutschbauer, Adam M.;
    • Fomenkov, Alexey;
    • Fries, Roxanne;
    • Froula, Jeff;
    • Kang, Dongwan D.;
    • Malmstrom, Rex R.;
    • Morgan, Richard D.;
    • Posfai, Janos;
    • Singh, Kanwar;
    • Visel, Axel;
    • Wetmore, Kelly;
    • Zhao, Zhiying;
    • Rubin, Edward M.;
    • Korlach, Jonas;
    • Pennacchio, Len A.;
    • Roberts, Richard J.
    Publication type:
    Article
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    Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.

    Published in:
    Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01205
    By:
    • Hemme, Christopher L.;
    • Qichao Tu;
    • Zhou Shi;
    • Yujia Qin;
    • Weimin Gao;
    • Ye Deng;
    • Van Nostrand, Joy D.;
    • Liyou Wu;
    • Zhili He;
    • Chain, Patrick S. G.;
    • Tringe, Susannah G.;
    • Fields, Matthew W.;
    • Rubin, Edward M.;
    • Tiedje, James M.;
    • Hazen, Terry C.;
    • Arkin, Adam P.;
    • Jizhong Zhou;
    • Van Der Meer, Jan Roelof;
    • Prithiviraj, Bharath;
    • Drewniak, Lukasz
    Publication type:
    Article
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    Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 9, p. 1715, doi. 10.1038/ismej.2012.59
    By:
    • Mason, Olivia U;
    • Hazen, Terry C;
    • Borglin, Sharon;
    • Chain, Patrick S G;
    • Dubinsky, Eric A;
    • Fortney, Julian L;
    • Han, James;
    • Holman, Hoi-Ying N;
    • Hultman, Jenni;
    • Lamendella, Regina;
    • Mackelprang, Rachel;
    • Malfatti, Stephanie;
    • Tom, Lauren M;
    • Tringe, Susannah G;
    • Woyke, Tanja;
    • Zhou, Jizhong;
    • Rubin, Edward M;
    • Jansson, Janet K
    Publication type:
    Article
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    Genome-wide compendium and functional assessment of in vivo heart enhancers.

    Published in:
    Nature Communications, 2016, v. 7, n. 10, p. 12923, doi. 10.1038/ncomms12923
    By:
    • Dickel, Diane E.;
    • Barozzi, Iros;
    • Zhu, Yiwen;
    • Fukuda-Yuzawa, Yoko;
    • Osterwalder, Marco;
    • Mannion, Brandon J.;
    • May, Dalit;
    • Spurrell, Cailyn H.;
    • Plajzer-Frick, Ingrid;
    • Pickle, Catherine S.;
    • Lee, Elizabeth;
    • Garvin, Tyler H.;
    • Kato, Momoe;
    • Akiyama, Jennifer A.;
    • Afzal, Veena;
    • Lee, Ah Young;
    • Gorkin, David U.;
    • Ren, Bing;
    • Rubin, Edward M.;
    • Visel, Axel
    Publication type:
    Article
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    Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.

    Published in:
    Nature Communications, 2016, v. 7, n. 1, p. 10476, doi. 10.1038/ncomms10476
    By:
    • Eloe-Fadrosh, Emiley A.;
    • Paez-Espino, David;
    • Jarett, Jessica;
    • Dunfield, Peter F.;
    • Hedlund, Brian P.;
    • Dekas, Anne E.;
    • Grasby, Stephen E.;
    • Brady, Allyson L.;
    • Dong, Hailiang;
    • Briggs, Brandon R.;
    • Li, Wen-Jun;
    • Goudeau, Danielle;
    • Malmstrom, Rex;
    • Pati, Amrita;
    • Pett-Ridge, Jennifer;
    • Rubin, Edward M.;
    • Woyke, Tanja;
    • Kyrpides, Nikos C.;
    • Ivanova, Natalia N.
    Publication type:
    Article
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    Leichte Neucodierung von Selenocystein in der Natur.

    Published in:
    Angewandte Chemie, 2016, v. 128, n. 17, p. 5423, doi. 10.1002/ange.201511657
    By:
    • Mukai, Takahito;
    • Englert, Markus;
    • Tripp, H. James;
    • Miller, Corwin;
    • Ivanova, Natalia N.;
    • Rubin, Edward M.;
    • Kyrpides, Nikos C.;
    • Söll, Dieter
    Publication type:
    Article
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    Transfer RNAs with novel cloverleaf structures.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. 5, p. 2776, doi. 10.1093/nar/gkw898
    By:
    • Mukai, Takahito;
    • Vargas-Rodriguez, Oscar;
    • Englert, Markus;
    • Tripp, H. James;
    • Ivanova, Natalia N.;
    • Rubin, Edward M.;
    • Kyrpides, Nikos C.;
    • Söll, Dieter
    Publication type:
    Article
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    Wildlife in Cameroon harbor diverse coronaviruses, including many closely related to human coronavirus 229E.

    Published in:
    Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veab110
    By:
    • Ntumvi, Nkom F;
    • Ndze, Valantine Ngum;
    • Gillis, Amethyst;
    • Diffo, Joseph Le Doux;
    • Tamoufe, Ubald;
    • Takuo, Jean-Michel;
    • Mouiche, Moctar M M;
    • Nwobegahay, Julius;
    • LeBreton, Matthew;
    • Rimoin, Anne W;
    • Schneider, Bradley S;
    • Monagin, Corina;
    • McIver, David J;
    • Roy, Sanjit;
    • Ayukekbong, James A;
    • Saylors, Karen E;
    • Joly, Damien O;
    • Wolfe, Nathan D;
    • Rubin, Edward M;
    • Lange, Christian E
    Publication type:
    Article