Works by Rubin, Carl-Johan

Results: 35

Long-read whole-genome analysis of human single cells.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40898-3

By:

Hård, Joanna;
Mold, Jeff E.;
Eisfeldt, Jesper;
Tellgren-Roth, Christian;
Häggqvist, Susana;
Bunikis, Ignas;
Contreras-Lopez, Orlando;
Chin, Chen-Shan;
Nordlund, Jessica;
Rubin, Carl-Johan;
Feuk, Lars;
Michaëlsson, Jakob;
Ameur, Adam

Publication type:

Article

Complex genetic architecture of the chicken Growth1 QTL region.

Published in:

PLoS ONE, 2024, v. 19, n. 5, p. 1, doi. 10.1371/journal.pone.0295109

By:

Ou, Jen-Hsiang;
Rönneburg, Tilman;
Carlborg, Örjan;
Honaker, Christa Ferst;
Siegel, Paul B.;
Rubin, Carl-Johan

Publication type:

Article

Identification and validation of genetic variants predictive of gait in standardbred horses.

Published in:

PLoS Genetics, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pgen.1008146

By:

McCoy, Annette M.;
Beeson, Samantha K.;
Rubin, Carl-Johan;
Andersson, Leif;
Caputo, Paul;
Lykkjen, Sigrid;
Moore, Alison;
Piercy, Richard J.;
Mickelson, James R.;
McCue, Molly E.

Publication type:

Article

Genetics of adaptation in modern chicken.

Published in:

PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1007989

By:

Qanbari, Saber;
Rubin, Carl-Johan;
Maqbool, Khurram;
Weigend, Steffen;
Weigend, Annett;
Geibel, Johannes;
Kerje, Susanne;
Wurmser, Christine;
Peterson, Andrew Townsend;
Jr.Brisbin, I. Lehr;
Preisinger, Ruedi;
Fries, Ruedi;
Simianer, Henner;
Andersson, Leif

Publication type:

Article

The polarity protein Par3 coordinates positively self-renewal and negatively invasiveness in glioblastoma.

Published in:

Cell Death & Disease, 2021, v. 12, n. 10, p. 1, doi. 10.1038/s41419-021-04220-7

By:

Dadras, Mahsa Shahidi;
Caja, Laia;
Mezheyeuski, Artur;
Liu, Sijia;
Gélabert, Caroline;
Gomez-Puerto, Maria Catalina;
Gallini, Radiosa;
Rubin, Carl-Johan;
ten Dijke, Peter;
Heldin, Carl-Henrik;
Moustakas, Aristidis

Publication type:

Article

Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 10, p. 1918, doi. 10.1093/gbe/evaa158

By:

Sato, Daiki X;
Rafati, Nima;
Ring, Henrik;
Younis, Shady;
Feng, Chungang;
Blanco-Aguiar, José A;
Rubin, Carl-Johan;
Villafuerte, Rafael;
Hallböök, Finn;
Carneiro, Miguel;
Andersson, Leif

Publication type:

Article

Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 1, p. 276, doi. 10.1093/gbe/evy004

By:

Takashi Makino;
Rubin, Carl-Johan;
Carneiro, Miguel;
Axelsson, Erik;
Andersson, Leif;
Webste, Matthew T.

Publication type:

Article

Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice.

Published in:

Nature, 2012, v. 488, n. 7413, p. 642, doi. 10.1038/nature11399

By:

Andersson, Lisa S.;
Larhammar, Martin;
Memic, Fatima;
Wootz, Hanna;
Schwochow, Doreen;
Rubin, Carl-Johan;
Patra, Kalicharan;
Arnason, Thorvaldur;
Wellbring, Lisbeth;
Hjälm, Göran;
Imsland, Freyja;
Petersen, Jessica L.;
McCue, Molly E.;
Mickelson, James R.;
Cothran, Gus;
Ahituv, Nadav;
Roepstorff, Lars;
Mikko, Sofia;
Vallstedt, Anna;
Lindgren, Gabriella

Publication type:

Article

Whole-genome resequencing reveals loci under selection during chicken domestication.

Published in:

Nature, 2010, v. 464, n. 7288, p. 587, doi. 10.1038/nature08832

By:

Rubin, Carl-Johan;
Zody, Michael C.;
Eriksson, Jonas;
Meadows, Jennifer R. S.;
Sherwood, Ellen;
Webster, Matthew T.;
Lin Jiang;
Ingman, Max;
Sharpe, Ted;
Sojeong Ka;
Hallböök, Finn;
Besnier, Francois;
Carlborg, Örjan;
Bed'hom, Bertrand;
Tixier-Boichard, Michèle;
Jensen, Per;
Siegel, Paul;
Lindblad-Toh, Kerstin;
Andersson, Leif

Publication type:

Article

Orthopteran Neo‐Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes.

Published in:

Molecular Ecology, 2024, v. 33, n. 23, p. 1, doi. 10.1111/mec.17567

By:

Jayaprasad, Suvratha;
Peona, Valentina;
Ellerstrand, Simon J.;
Rossini, Roberto;
Bunikis, Ignas;
Pettersson, Olga V.;
Olsen, Remi‐André;
Rubin, Carl‐Johan;
Einarsdottir, Elisabet;
Bonath, Franziska;
Bradford, Tessa M.;
Cooper, Steven J. B.;
Hansson, Bengt;
Suh, Alexander;
Kawakami, Takeshi;
Schielzeth, Holger;
Palacios‐Gimenez, Octavio M.

Publication type:

Article

Ultralow amounts of DNA from long-term archived serum samples produce high-quality methylomes.

Published in:

Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01097-3

By:

Wojewodzic, Marcin W.;
Leithaug, Magnus;
Lauritzen, Marianne;
Lyle, Robert;
Haglund, Sofia;
Rubin, Carl-Johan;
Ewels, Philip A.;
Grotmol, Tom;
Rounge, Trine B.

Publication type:

Article

Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus.

Published in:

Genetics, 2017, v. 205, n. 2, p. 955, doi. 10.1534/genetics.116.196667

By:

Carneiro, Miguel;
Dou Hu;
Archer, John;
Chungang Feng;
Afonso, Sandra;
Congying Chen;
Blanco-Aguiar, José A.;
Garreau, Hervé;
Boucher, Samuel;
Ferreira, Paula G.;
Ferrand, Nuno;
Rubin, Carl-Johan;
Andersson, Leif

Publication type:

Article

Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits.

Published in:

Animal Genetics, 2015, v. 46, n. 4, p. 418, doi. 10.1111/age.12299

By:

Carneiro, Miguel;
Piorno, Vicente;
Rubin, Carl‐Johan;
Alves, Joel M.;
Ferrand, Nuno;
Alves, Paulo C.;
Andersson, Leif

Publication type:

Article

COL1 C-propeptide cleavage site mutations cause high bone mass osteogenesis imperfecta.

Published in:

Human Mutation, 2011, v. 32, n. 6, p. 598, doi. 10.1002/humu.21475

By:

Lindahl, Katarina;
Barnes, Aileen M.;
Fratzl-Zelman, Nadja;
Whyte, Michael P.;
Hefferan, Theresa E.;
Makareeva, Elena;
Brusel, Marina;
Yaszemski, Michael J.;
Rubin, Carl-Johan;
Kindmark, Andreas;
Roschger, Paul;
Klaushofer, Klaus;
McAlister, William H.;
Mumm, Steven;
Leikin, Sergey;
Kessler, Efrat;
Boskey, Adele L.;
Ljunggren, Östen;
Marini, Joan C.

Publication type:

Article

Evolution of Darwin's finches and their beaks revealed by genome sequencing.

Published in:

Nature, 2015, v. 518, n. 7539, p. 371, doi. 10.1038/nature14181

By:

Lamichhaney, Sangeet;
Berglund, Jonas;
Almén, Markus Sällman;
Maqbool, Khurram;
Grabherr, Manfred;
Martinez-Barrio, Alvaro;
Promerová, Marta;
Rubin, Carl-Johan;
Wang, Chao;
Zamani, Neda;
Grant, B. Rosemary;
Grant, Peter R.;
Webster, Matthew T.;
Andersson, Leif

Publication type:

Article

The horse Y chromosome as an informative marker for tracing sire lines.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-42640-w

By:

Felkel, Sabine;
Vogl, Claus;
Rigler, Doris;
Dobretsberger, Viktoria;
Chowdhary, Bhanu P.;
Distl, Ottmar;
Fries, Ruedi;
Jagannathan, Vidhya;
Janečka, Jan E.;
Leeb, Tosso;
Lindgren, Gabriella;
McCue, Molly;
Metzger, Julia;
Neuditschko, Markus;
Rattei, Thomas;
Raudsepp, Terje;
Rieder, Stefan;
Rubin, Carl-Johan;
Schaefer, Robert;
Schlötterer, Christian

Publication type:

Article

Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut.

Published in:

PLoS Genetics, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pgen.1010011

By:

Edvardsen, Rolf Brudvik;
Wallerman, Ola;
Furmanek, Tomasz;
Kleppe, Lene;
Jern, Patric;
Wallberg, Andreas;
Kjærner-Semb, Erik;
Mæhle, Stig;
Olausson, Sara Karolina;
Sundström, Elisabeth;
Harboe, Torstein;
Mangor-Jensen, Ragnfrid;
Møgster, Margareth;
Perrichon, Prescilla;
Norberg, Birgitta;
Rubin, Carl-Johan

Publication type:

Article

Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 7, p. 2213, doi. 10.1534/g3.116.029645

By:

Rafati, Nima;
Andersson, Lisa S.;
Mikko, Sofia;
Chungang Feng;
Raudsepp, Terje;
Pettersson, Jessica;
Janecka, Jan;
Wattle, Ove;
Ameur, Adam;
Thyreen, Gunilla;
Eberth, John;
Huddleston, John;
Malig, Maika;
Bailey, Ernest;
Eichler, Evan E.;
Dalin, Göran;
Chowdary, Bhanu;
Andersson, Leif;
Lindgren, Gabriella;
Rubin, Carl-Johan

Publication type:

Article

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere.

Published in:

Evolutionary Applications, 2021, v. 14, n. 2, p. 446, doi. 10.1111/eva.13129

By:

Kjærner‐Semb, Erik;
Edvardsen, Rolf B.;
Ayllon, Fernando;
Vogelsang, Petra;
Furmanek, Tomasz;
Rubin, Carl Johan;
Veselov, Alexey E.;
Nilsen, Tom Ole;
McCormick, Stephen D.;
Primmer, Craig R.;
Wargelius, Anna

Publication type:

Article

Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6700-3

By:

Bianchi, Matteo;
Rafati, Nima;
Karlsson, Åsa;
Murén, Eva;
Rubin, Carl-Johan;
Sundberg, Katarina;
Andersson, Göran;
Kämpe, Olle;
Hedhammar, Åke;
Lindblad-Toh, Kerstin;
Rosengren Pielberg, Gerli

Publication type:

Article

A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken.

Published in:

PLoS Genetics, 2023, v. 18, n. 4, p. 1, doi. 10.1371/journal.pgen.1010724

By:

Bi, Huijuan;
Tranell, Jonas;
Harper, Dawn C.;
Lin, Weifeng;
Li, Jingyi;
Hellström, Anders R.;
Larsson, Mårten;
Rubin, Carl-Johan;
Wang, Chao;
Sayyab, Shumaila;
Kerje, Susanne;
Bed'hom, Bertrand;
Gourichon, David;
Ito, Shosuke;
Wakamatsu, Kazumasa;
Tixier-Boichard, Michèle;
Marks, Michael S.;
Globisch, Daniel;
Andersson, Leif

Publication type:

Article

Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta.

Published in:

European Journal of Human Genetics, 2015, v. 23, n. 8, p. 1112, doi. 10.1038/ejhg.2015.129

By:

Lindahl, Katarina;
Åström, Eva;
Rubin, Carl-Johan;
Grigelioniene, Giedre;
Malmgren, Barbro;
Ljunggren, Östen;
Kindmark, Andreas

Publication type:

Article

Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta.

Published in:

European Journal of Human Genetics, 2015, v. 23, n. 8, p. 1042, doi. 10.1038/ejhg.2015.81

By:

Lindahl, Katarina;
Åström, Eva;
Rubin, Carl-Johan;
Grigelioniene, Giedre;
Malmgren, Barbro;
Ljunggren, Östen;
Kindmark, Andreas

Publication type:

Article

Quantitative Trait Loci for BMD and Bone Strength in an Intercross Between Domestic and Wildtype Chickens.

Published in:

Journal of Bone & Mineral Research, 2007, v. 22, n. 3, p. 375, doi. 10.1359/JBMR.061203

By:

Rubin, Carl-Johan;
Brändstrom, Helena;
Wright, Dominic;
Kerje, Susanne;
Gunnarsson, Ulrika;
Schutz, Karin;
Fredriksson, Robert;
Jensen, Per;
Andersson, Leif;
Ohlsson, Claes;
Mallmin, Hans;
Larsson, Sune;
Kindmark, Andreas

Publication type:

Article

Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0128969

By:

Dorshorst, Ben;
Henegar, Corneliu;
Liao, Xiaoping;
Sällman Almén, Markus;
Rubin, Carl-Johan;
Ito, Shosuke;
Wakamatsu, Kazumasa;
Stothard, Paul;
Van Doormaal, Brian;
Plastow, Graham;
Barsh, Gregory S.;
Andersson, Leif

Publication type:

Article

ZBED6 Modulates the Transcription of Myogenic Genes in Mouse Myoblast Cells.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094187

By:

Jiang, Lin;
Wallerman, Ola;
Younis, Shady;
Rubin, Carl-Johan;
Gilbert, Elizabeth R.;
Sundström, Elisabeth;
Ghazal, Awaisa;
Zhang, Xiaolan;
Wang, Li;
Mikkelsen, Tarjei S.;
Andersson, Göran;
Andersson, Leif

Publication type:

Article

A Genomic Duplication is Associated with Ectopic Eomesodermin Expression in the Embryonic Chicken Comb and Two Duplex-comb Phenotypes.

Published in:

PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1004947

By:

Dorshorst, Ben;
Harun-Or-Rashid, Mohammad;
Bagherpoor, Alireza Jian;
Rubin, Carl-Johan;
Ashwell, Chris;
Gourichon, David;
Tixier-Boichard, Michèle;
Hallböök, Finn;
Andersson, Leif

Publication type:

Article

A <i>cis</i>-Regulatory Mutation of <i>PDSS2</i> Causes Silky-Feather in Chickens.

Published in:

PLoS Genetics, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pgen.1004576

By:

Feng, Chungang;
Gao, Yu;
Dorshorst, Ben;
Song, Chi;
Gu, Xiaorong;
Li, Qingyuan;
Li, Jinxiu;
Liu, Tongxin;
Rubin, Carl-Johan;
Zhao, Yiqiang;
Wang, Yanqiang;
Fei, Jing;
Li, Huifang;
Chen, Kuanwei;
Qu, Hao;
Shu, Dingming;
Ashwell, Chris;
Da, Yang;
Andersson, Leif;
Hu, Xiaoxiang

Publication type:

Article

A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at HAO1 and BMP2, Selected during Domestication.

Published in:

PLoS Genetics, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pgen.1002914

By:

Johnsson, Martin;
Gustafson, Ida;
Rubin, Carl-Johan;
Sahlqvist, Anna-Stina;
Jonsson, Kenneth B.;
Kerje, Susanne;
Ekwall, Olov;
Kämpe, Olle;
Andersson, Leif;
Jensen, Per;
Wright, Dominic

Publication type:

Article

The Rose-comb Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility.

Published in:

PLoS Genetics, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pgen.1002775

By:

Imsland, Freyja;
Feng, Chungang;
Boije, Henrik;
Bed'hom, Bertrand;
Fillon, Valérie;
Dorshorst, Ben;
Rubin, Carl-Johan;
Ranran Liu;
Yu Gao;
Xiaorong Gu;
Yanqiang Wang;
Gourichon, David;
Zody, Michael C.;
Zecchin, William;
Vieaud, Agathe;
Tixier-Boichard, Michèle;
Xiaoxiang Hu;
Hallböök, Finn;
Ning Li;
Andersson, Leif

Publication type:

Article

A Complex Genomic Rearrangement Involving the Endothelin 3 Locus Causes Dermal Hyperpigmentation in the Chicken.

Published in:

PLoS Genetics, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pgen.1002412

By:

Dorshorst, Ben;
Molin, Anna-Maja;
Rubin, Carl-Johan;
Johansson, Anna M.;
Strömstedt, Lina;
Manh-Hung Pham;
Chih-Feng Chen;
Hallböök, Finn;
Ashwell, Chris;
Andersson, Leif

Publication type:

Article

Spatiotemporal variations in retrovirus-host interactions among Darwin's finches.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33723-w

By:

Hill, Jason;
Lillie, Mette;
Pettersson, Mats E.;
Rubin, Carl-Johan;
Grant, B. Rosemary;
Grant, Peter R.;
Andersson, Leif;
Jern, Patric

Publication type:

Article

Differentiation and Phylogenetic Relationships in Mycobacterium spp with Special Reference to the RNase P RNA Gene rnpB.

Published in:

Current Microbiology, 2014, v. 69, n. 5, p. 634, doi. 10.1007/s00284-014-0630-8

By:

Herrmann, Björn;
Abdeldaim, Guma;
Stolt, Pelle;
Kirsebom, Leif;
Rubin, Carl-Johan;
Thollesson, Mikael

Publication type:

Article

Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 19, p. 11448, doi. 10.1002/ece3.5646

By:

Kurland, Sara;
Wheat, Christopher W.;
Paz Celorio Mancera, Maria;
Kutschera, Verena E.;
Hill, Jason;
Andersson, Anastasia;
Rubin, Carl‐Johan;
Andersson, Leif;
Ryman, Nils;
Laikre, Linda

Publication type:

Article

Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens.

Published in:

PLoS Genetics, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pgen.1000512

By:

Wright, Dominic;
Boije, Henrik;
Meadows, Jennifer R. S.;
Bed'hom, Bertrand;
Gourichon, David;
Vieaud, Agathe;
Tixier-Boichard, Michèle;
Rubin, Carl-Johan;
Imsland, Freyja;
Hallböök, Finn;
Andersson, Leif

Publication type:

Article