Works by Rouskin, Silvi

Results: 12

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 12, p. 1, doi. 10.15252/msb.20145524

By:

Pop, Cristina;
Rouskin, Silvi;
Ingolia, Nicholas T;
Han, Lu;
Phizicky, Eric M;
Weissman, Jonathan S;
Koller, Daphne

Publication type:

Article

DMS‐MapSeq Analysis of Antisense Oligonucleotide Binding to lncRNA PANDA.

Published in:

Current Protocols, 2024, v. 4, n. 11, p. 1, doi. 10.1002/cpz1.70038

By:

Romero Agosto, Gabriel A.;
Cox, Ethan;
Rouskin, Silvi

Publication type:

Article

Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult.

Published in:

Clinical Infectious Diseases, 2006, v. 43, n. 8, p. e71, doi. 10.1086/507896

By:

Chiu, Charles Y.;
Rouskin, Silvi;
Koshy, Anita;
Urisman, Anatoly;
Fischer, Kael;
Yagi, Shigeo;
Schnurr, David;
Eckburg, Paul B.;
Tompkins, Lucy S.;
Blackburn, Brian G.;
Merker, Jason D.;
Patterson, Bruce K.;
Ganem, Don;
DeRisi, Joseph L.

Publication type:

Article

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.

Published in:

Nature, 2014, v. 505, n. 7485, p. 701, doi. 10.1038/nature12894

By:

Rouskin, Silvi;
Zubradt, Meghan;
Washietl, Stefan;
Kellis, Manolis;
Weissman, Jonathan S.

Publication type:

Article

Web-based platform for analysis of RNA folding from high throughput chemical probing data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. W1, p. W266, doi. 10.1093/nar/gkac435

By:

Jurich, Christopher P;
Brivanlou, Amir;
Rouskin, Silvi;
Yesselman, Joseph D

Publication type:

Article

Viral RNA Interactome: The Ultimate Researcher's Guide to RNA–Protein Interactions.

Published in:

Viruses (1999-4915), 2024, v. 16, n. 11, p. 1702, doi. 10.3390/v16111702

By:

Hanson, Wesley A.;
Romero Agosto, Gabriel A.;
Rouskin, Silvi

Publication type:

Article

Repeat RNA structure and protein interactions influence RAN translation and neurodegenerative phenotypes in models of FTD and ALS.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.063489

By:

Malik, Indranil;
Swaminathan, Harish;
Rouskin, Silvi;
Todd, Peter K.

Publication type:

Article

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency.

Published in:

eLife, 2017, p. 1, doi. 10.7554/eLife.22037

By:

Burkhardt, David H.;
Rouskin, Silvi;
Yan Zhang;
Gene-Wei Li;
Weissman, Jonathan S.;
Gross, Carol A.

Publication type:

Article

KREH2 helicase represses ND7 mRNA editing in procyclic-stage Trypanosoma brucei by opposite modulation of canonical and 'moonlighting' gRNA utilization creating a proposed mRNA structure.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 19, p. 11940, doi. 10.1093/nar/gkae699

By:

Meehan, Joshua;
Ivens, Alasdair;
Grote, Scott;
Rodshagen, Tyler;
Chen, Zihao;
Goode, Cody;
Sharma, Sunil K;
Kumar, Vikas;
Frese, Addison;
Goodall, Zachary;
McCleskey, Laura;
Sechrist, Rebecca;
Zeng, Lanying;
Savill, Nicholas J;
Rouskin, Silvi;
Schnaufer, Achim;
McDermott, Suzanne M;
Cruz-Reyes, Jorge

Publication type:

Article

Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 13, p. 6944, doi. 10.1093/nar/gkad453

By:

Meehan, Joshua;
McDermott, Suzanne M;
Ivens, Alasdair;
Goodall, Zachary;
Chen, Zihao;
Yu, Zihao;
Woo, Jia;
Rodshagen, Tyler;
McCleskey, Laura;
Sechrist, Rebecca;
Stuart, Kenneth;
Zeng, Lanying;
Rouskin, Silvi;
Savill, Nicholas J;
Schnaufer, Achim;
Zhang, Xiuren;
Cruz-Reyes, Jorge

Publication type:

Article

Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28603-2

By:

Lan, Tammy C. T.;
Allan, Matty F.;
Malsick, Lauren E.;
Woo, Jia Z.;
Zhu, Chi;
Zhang, Fengrui;
Khandwala, Stuti;
Nyeo, Sherry S. Y.;
Sun, Yu;
Guo, Junjie U.;
Bathe, Mark;
Näär, Anders;
Griffiths, Anthony;
Rouskin, Silvi

Publication type:

Article

Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity.

Published in:

Journal of Infectious Diseases, 2007, v. 196, n. 6, p. 817, doi. 10.1086/520816

By:

Kistler, Amy;
Avila, Pedro C.;
Rouskin, Silvi;
Wang, David;
Ward, Theresa;
Yagi, Shigeo;
Schnurr, David;
Ganem, Don;
DeRisi, Joseph L.;
Boushey, Homer A.

Publication type:

Article