Works by Rost, Burkhard

Results: 189

Letter to the Editor: 1H, 13C and 15N assignments for the Archaeglobus fulgidis protein AF2095.

Published in:

Journal of Biomolecular NMR, 2004, v. 30, n. 1, p. 107, doi. 10.1023/B:JNMR.0000042947.19593.80

By:

Powers, Robert;
Acton, Thomas B.;
Yiwen Chiang;
Rajan, P.K.;
Cort, John R.;
Kennedy, Michael A.;
Jinfeng Liu;
LiChung Ma;
Rost, Burkhard;
Montelione, Gaetano T.

Publication type:

Article

A platform for integrating threading results with protein family analyses.

Published in:

Bioinformatics, 1999, v. 15, n. 12, p. 1062, doi. 10.1093/bioinformatics/15.12.1062

By:

Pazos, Florencio;
Rost, Burkhard;
Valencia, Alfonso

Publication type:

Article

The importance of planning CT-based imaging features for machine learning-based prediction of pain response.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43768-6

By:

Llorián-Salvador, Óscar;
Akhgar, Joachim;
Pigorsch, Steffi;
Borm, Kai;
Münch, Stefan;
Bernhardt, Denise;
Rost, Burkhard;
Andrade-Navarro, Miguel A.;
Combs, Stephanie E.;
Peeken, Jan C.

Publication type:

Article

The importance of planning CT-based imaging features for machine learning-based prediction of pain response.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43768-6

By:

Llorián-Salvador, Óscar;
Akhgar, Joachim;
Pigorsch, Steffi;
Borm, Kai;
Münch, Stefan;
Bernhardt, Denise;
Rost, Burkhard;
Andrade-Navarro, Miguel A.;
Combs, Stephanie E.;
Peeken, Jan C.

Publication type:

Article

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W523, doi. 10.1093/nar/gkq528

By:

Wainreb, Gilad;
Ashkenazy, Haim;
Bromberg, Yana;
Starovolsky-Shitrit, Alina;
Haliloglu, Turkan;
Ruppin, Eytan;
Avraham, Karen B.;
Rost, Burkhard;
Ben-Tal, Nir

Publication type:

Article

SNAP: predict effect of non-synonymous polymorphisms on function.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 11, p. 3823, doi. 10.1093/nar/gkm238

By:

Bromberg, Yana;
Rost, Burkhard

Publication type:

Article

Consensus sequences improve PSI-BLAST through mimicking profile–profile alignments.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2238, doi. 10.1093/nar/gkm107

By:

Przybylski, Dariusz;
Rost, Burkhard

Publication type:

Article

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w186, doi. 10.1093/nar/gkl262

By:

Bigelow, Henry;
Rost, Burkhard

Publication type:

Article

Epitome: database of structure-inferred antigenic epitopes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d777, doi. 10.1093/nar/gkj053

By:

Schlessinger, Avner;
Ofran, Yanay;
Yachdav, Guy;
Rost, Burkhard

Publication type:

Article

EVAcon: a protein contact prediction evaluation service.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w347, doi. 10.1093/nar/gki411

By:

Graña, Osvaldo;
Eyrich, Volker A.;
Pazos, Florencio;
Rost, Burkhard;
Valencia, Alfonso

Publication type:

Article

NMPdb: Database of Nuclear Matrix Proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d160

By:

Mika, Sven;
Rost, Burkhard

Publication type:

Article

CHOP: parsing proteins into structural domains.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w569, doi. 10.1093/nar/gkh481

By:

Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

The PredictProtein server.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w321, doi. 10.1093/nar/gkh377

By:

Rost, Burkhard;
Yachdav, Guy;
Liu, Jinfeng

Publication type:

Article

NLProt: extracting protein names and sequences from papers.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w634, doi. 10.1093/nar/gkh427

By:

Mika, Sven;
Rost, Burkhard

Publication type:

Article

LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w517, doi. 10.1093/nar/gkh441

By:

Nair, Rajesh;
Rost, Burkhard

Publication type:

Article

Sequence-based prediction of protein domains.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 12, p. 3522, doi. 10.1093/nar/gkh684

By:

Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

Predicting transmembrane beta‐barrels in proteomes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2566, doi. 10.1093/nar/gkh580

By:

Bigelow, Henry R.;
Petrey, Donald S.;
Liu, Jinfeng;
Przybylski, Dariusz;
Rost, Burkhard

Publication type:

Article

DSSPcont: continuous secondary structure assignments for proteins.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3293, doi. 10.1093/nar/gkg626

By:

Carter, Phil;
Andersen, Claus A. F.;
Rost, Burkhard

Publication type:

Article

UniqueProt: creating representative protein sequence sets.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3789, doi. 10.1093/nar/gkg620

By:

Mika, Sven;
Rost, Burkhard

Publication type:

Article

EVA: evaluation of protein structure prediction servers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3311, doi. 10.1093/nar/gkg619

By:

Koh, Ingrid Y. Y.;
Eyrich, Volker A.;
Marti-Renom, Marc A.;
Przybylski, Dariusz;
Madhusudhan, Mallur S.;
Eswar, Narayanan;
Graña, Osvaldo;
Pazos, Florencio;
Valencia, Alfonso;
Sali, Andrej;
Rost, Burkhard

Publication type:

Article

The PredictProtein server.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3300, doi. 10.1093/nar/gkg508

By:

Rost, Burkhard;
Liu, Jinfeng

Publication type:

Article

LOC3D: annotate sub-cellular localization for protein structures.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3337, doi. 10.1093/nar/gkg514

By:

Nair, Rajesh;
Rost, Burkhard

Publication type:

Article

NORSp: predictions of long regions without regular secondary structure.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3833, doi. 10.1093/nar/gkg515

By:

Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

Static benchmarking of membrane helix predictions.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3642, doi. 10.1093/nar/gkg532

By:

Kernytsky, Andrew;
Rost, Burkhard

Publication type:

Article

META-PP: single interface to crucial prediction servers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3308, doi. 10.1093/nar/gkg572

By:

Eyrich, Volker A.;
Rost, Burkhard

Publication type:

Article

NLSdb: database of nuclear localization signals.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 397, doi. 10.1093/nar/gkg001

By:

Nair, Rajesh;
Carter, Phil;
Rost, Burkhard

Publication type:

Article

PEP: Predictions for Entire Proteomes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 410, doi. 10.1093/nar/gkg102

By:

Carter, Phil;
Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

Domain loss enabled evolution of novel functions in the snake three-finger toxin gene superfamily.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40550-0

By:

Koludarov, Ivan;
Senoner, Tobias;
Jackson, Timothy N. W.;
Dashevsky, Daniel;
Heinzinger, Michael;
Aird, Steven D.;
Rost, Burkhard

Publication type:

Article

Development and Evaluation of MR-Based Radiogenomic Models to Differentiate Atypical Lipomatous Tumors from Lipomas.

Published in:

Cancers, 2023, v. 15, n. 7, p. 2150, doi. 10.3390/cancers15072150

By:

Foreman, Sarah C.;
Llorián-Salvador, Oscar;
David, Diana E.;
Rösner, Verena K. N.;
Rischewski, Jon F.;
Feuerriegel, Georg C.;
Kramp, Daniel W.;
Luiken, Ina;
Lohse, Ann-Kathrin;
Kiefer, Jurij;
Mogler, Carolin;
Knebel, Carolin;
Jung, Matthias;
Andrade-Navarro, Miguel A.;
Rost, Burkhard;
Combs, Stephanie E.;
Makowski, Marcus R.;
Woertler, Klaus;
Peeken, Jan C.;
Gersing, Alexandra S.

Publication type:

Article

Comparison of a molecular dynamics model with the X-ray structure of the N370S acid-β-glucosidase mutant that causes Gaucher disease.

Published in:

PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 10, p. 773, doi. 10.1093/protein/gzr032

By:

Offman, Marc N.;
Krol, Marcin;
Rost, Burkhard;
Silman, Israel;
Sussman,, Joel L.;
Futerman, Anthony H.

Publication type:

Article

LambdaPP: Fast and accessible protein‐specific phenotype predictions.

Published in:

Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 1, p. 1, doi. 10.1002/pro.4524

By:

Olenyi, Tobias;
Marquet, Céline;
Heinzinger, Michael;
Kröger, Benjamin;
Nikolova, Tiha;
Bernhofer, Michael;
Sändig, Philip;
Schütze, Konstantin;
Littmann, Maria;
Mirdita, Milot;
Steinegger, Martin;
Dallago, Christian;
Rost, Burkhard

Publication type:

Article

Prevalent bee venom genes evolved before the aculeate stinger and eusociality.

Published in:

BMC Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12915-023-01656-5

By:

Koludarov, Ivan;
Velasque, Mariana;
Senoner, Tobias;
Timm, Thomas;
Greve, Carola;
Hamadou, Alexander Ben;
Gupta, Deepak Kumar;
Lochnit, Günter;
Heinzinger, Michael;
Vilcinskas, Andreas;
Gloag, Rosalyn;
Harpur, Brock A.;
Podsiadlowski, Lars;
Rost, Burkhard;
Jackson, Timothy N. W.;
Dutertre, Sebastien;
Stolle, Eckart;
von Reumont, Björn M.

Publication type:

Article

Protein–protein and protein-nucleic acid binding residues important for common and rare sequence variants in human.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03759-0

By:

Qiu, Jiajun;
Nechaev, Dmitrii;
Rost, Burkhard

Publication type:

Article

Variant effect predictions capture some aspects of deep mutational scanning experiments.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3439-4

By:

Reeb, Jonas;
Wirth, Theresa;
Rost, Burkhard

Publication type:

Article

Correction to: Detailed prediction of protein sub-nuclear localization.

Published in:

2019

By:

Littmann, Maria;
Goldberg, Tatyana;
Seitz, Sebastian;
Bodén, Mikael;
Rost, Burkhard

Publication type:

Correction Notice

Modeling aspects of the language of life through transfer-learning protein sequences.

Published in:

BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3220-8

By:

Heinzinger, Michael;
Elnaggar, Ahmed;
Wang, Yu;
Dallago, Christian;
Nechaev, Dmitrii;
Matthes, Florian;
Rost, Burkhard

Publication type:

Article

FunFam protein families improve residue level molecular function prediction.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-2988-x

By:

Scheibenreif, Linus;
Littmann, Maria;
Orengo, Christine;
Rost, Burkhard

Publication type:

Article

SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 9, p. 1, doi. 10.15252/msb.202010079

By:

O'Donoghue, Seán I;
Schafferhans, Andrea;
Sikta, Neblina;
Stolte, Christian;
Kaur, Sandeep;
Ho, Bosco K;
Anderson, Stuart;
Procter, James B;
Dallago, Christian;
Bordin, Nicola;
Adcock, Matt;
Rost, Burkhard

Publication type:

Article

Coordinating the impact of structural genomics on the human ?-helical transmembrane proteome.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 2, p. 135, doi. 10.1038/nsmb.2508

By:

Pieper, Ursula;
Schlessinger, Avner;
Kloppmann, Edda;
Chang, Geoffrey A;
Chou, James J;
Dumont, Mark E;
Fox, Brian G;
Fromme, Petra;
Hendrickson, Wayne A;
Malkowski, Michael G;
Rees, Douglas C;
Stokes, David L;
Stowell, Michael H B;
Wiener, Michael C;
Rost, Burkhard;
Stroud, Robert M;
Stevens, Raymond C;
Sali, Andrej

Publication type:

Article

Spectrum of Protein Location in Proteomes Captures Evolutionary Relationship Between Species.

Published in:

Journal of Molecular Evolution, 2021, v. 89, n. 8, p. 544, doi. 10.1007/s00239-021-10022-4

By:

Marot-Lassauzaie, Valérie;
Goldberg, Tatyana;
Armenteros, Jose Juan Almagro;
Nielsen, Henrik;
Rost, Burkhard

Publication type:

Article

Bilingual language model for protein sequence and structure.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 4, p. 1, doi. 10.1093/nargab/lqae150

By:

Heinzinger, Michael;
Weissenow, Konstantin;
Sanchez, Joaquin Gomez;
Henkel, Adrian;
Mirdita, Milot;
Steinegger, Martin;
Rost, Burkhard

Publication type:

Article

Contrastive learning on protein embeddings enlightens midnight zone.

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 2, p. 1, doi. 10.1093/nargab/lqac043

By:

Heinzinger, Michael;
Littmann, Maria;
Sillitoe, Ian;
Bordin, Nicola;
Orengo, Christine;
Rost, Burkhard

Publication type:

Article

Embeddings from deep learning transfer GO annotations beyond homology.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80786-0

By:

Littmann, Maria;
Heinzinger, Michael;
Dallago, Christian;
Olenyi, Tobias;
Rost, Burkhard

Publication type:

Article

Alignment-based Protein Mutational Landscape Prediction: Doing More with Less.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 11, p. 1, doi. 10.1093/gbe/evad201

By:

Abakarova, Marina;
Marquet, Céline;
Rera, Michael;
Rost, Burkhard;
Laine, Elodie

Publication type:

Article

CAFASP-1: Critical assessment of fully automated structure prediction methods.

Published in:

Proteins, 1999, v. 37, n. S3, p. 209, doi. 10.1002/(SICI)1097-0134(1999)37:3+<209::AID-PROT27>3.0.CO;2-Y

By:

Fischer, Daniel;
Barret, Christian;
Bryson, Kevin;
Elofsson, Arne;
Godzik, Adam;
Jones, David;
Karplus, Kevin J.;
Kelley, Lawrence A.;
MacCallum, Robert M.;
Pawowski, Krzysztof;
Rost, Burkhard;
Rychlewski, Leszek;
Sternberg, Michael

Publication type:

Article

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

Published in:

Proteins, 1999, v. 34, n. 2, p. 220, doi. 10.1002/(SICI)1097-0134(19990201)34:2<220::AID-PROT7>3.0.CO;2-K

By:

Zemla, Adam;
Venclovas, Česlovas;
Fidelis, Krzysztof;
Rost, Burkhard

Publication type:

Article

Better 1D predictions by experts with machines.

Published in:

Proteins, 1997, v. 29, n. S1, p. 192, doi. 10.1002/(SICI)1097-0134(1997)1+<192::AID-PROT25>3.0.CO;2-I

By:

Rost, Burkhard

Publication type:

Article

Progress of 1D protein structure prediction at last.

Published in:

Proteins, 1995, v. 23, n. 3, p. 295, doi. 10.1002/prot.340230304

By:

Rost, Burkhard;
Sander, Chris

Publication type:

Article

Conservation and prediction of solvent accessibility in protein families.

Published in:

Proteins, 1994, v. 20, n. 3, p. 216, doi. 10.1002/prot.340200303

By:

Rost, Burkhard;
Sander, Chris

Publication type:

Article

Combining evolutionary information and neural networks to predict protein secondary structure.

Published in:

Proteins, 1994, v. 19, n. 1, p. 55, doi. 10.1002/prot.340190108

By:

Rost, Burkhard;
Sander, Chris

Publication type:

Article