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Development of a Taxon-Specific Real-Time Polymerase Chain Reaction Method to Detect Trichoderma reesei Contaminations in Fermentation Products.
- Published in:
- Fermentation (Basel), 2023, v. 9, n. 11, p. 926, doi. 10.3390/fermentation9110926
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- Publication type:
- Article
Development of a Taxon-Specific Real-Time PCR Method Targeting the Bacillus subtilis Group to Strengthen the Control of Genetically Modified Bacteria in Fermentation Products.
- Published in:
- Fermentation (Basel), 2022, v. 8, n. 6, p. 78, doi. 10.3390/fermentation8020078
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- Publication type:
- Article
Development of a Taxon-Specific Real-Time PCR Method Targeting the Bacillus subtilis Group to Strengthen the Control of Genetically Modified Bacteria in Fermentation Products.
- Published in:
- Fermentation (Basel), 2022, v. 8, n. 2, p. 78, doi. 10.3390/fermentation8020078
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- Publication type:
- Article
Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation-PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array.
- Published in:
- BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/790170
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- Publication type:
- Article
Population Analysis of O26 Shiga Toxin-Producing Escherichia coli Causing Hemolytic Uremic Syndrome in Italy, 1989–2020, Through Whole Genome Sequencing.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fcimb.2022.842508
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- Publication type:
- Article
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-.
- Published in:
- PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192504
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- Publication type:
- Article
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.
- Published in:
- Antibiotics (2079-6382), 2020, v. 9, n. 8, p. 503, doi. 10.3390/antibiotics9080503
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- Publication type:
- Article
Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020.
- Published in:
- PLoS ONE, 2021, v. 16, n. 8, p. 1, doi. 10.1371/journal.pone.0256820
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- Publication type:
- Article
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 16, p. 5688, doi. 10.3390/ijms21165688
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- Publication type:
- Article
Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 15, p. 5585, doi. 10.3390/ijms21155585
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- Publication type:
- Article
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
- Published in:
- Annals of Clinical Microbiology & Antimicrobials, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12941-020-00411-w
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- Publication type:
- Article
Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms.
- Published in:
- Foods, 2023, v. 12, n. 3, p. 455, doi. 10.3390/foods12030455
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- Publication type:
- Article
Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study.
- Published in:
- Foods, 2022, v. 11, n. 21, p. 3348, doi. 10.3390/foods11213348
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- Publication type:
- Article
Characterization of Genetically Modified Microorganisms Using Short- and Long-Read Whole-Genome Sequencing Reveals Contaminations of Related Origin in Multiple Commercial Food Enzyme Products.
- Published in:
- Foods, 2021, v. 10, n. 11, p. 2637, doi. 10.3390/foods10112637
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- Publication type:
- Article
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
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- Foods, 2020, v. 9, n. 8, p. 1030, doi. 10.3390/foods9081030
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- Publication type:
- Article
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.809887
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- Publication type:
- Article
Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants.
- Published in:
- Genes, 2021, v. 12, n. 4, p. 565, doi. 10.3390/genes12040565
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- Publication type:
- Article
Correction to: FEDA (Food Enzyme Database): a web application gathering information about food enzyme preparations available on the European market.
- Published in:
- 2022
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- Publication type:
- Correction Notice
The use of comparative genome analysis and syntenic relationships allows extrapolating the position of Zn tolerance QTL regions from Arabidopsis halleri into Arabidopsis thaliana.
- Published in:
- Plant & Soil, 2008, v. 306, n. 1/2, p. 105, doi. 10.1007/s11104-007-9383-5
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- Publication type:
- Article
Status and potential of bacterial genomics for public health practice: a scoping review.
- Published in:
- 2019
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- Publication type:
- journal article
Assessment of the Feasibility of a Future Integrated Larger-Scale Epidemiological Study to Evaluate Health Risks of Air Pollution Episodes in Children.
- Published in:
- International Journal of Environmental Research & Public Health, 2022, v. 19, n. 14, p. 8531, doi. 10.3390/ijerph19148531
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- Publication type:
- Article
Shifting national surveillance of Shigella infections toward geno‐serotyping by the development of a tailored Luminex assay and NGS workflow.
- Published in:
- MicrobiologyOpen, 2019, v. 8, n. 8, p. N.PAG, doi. 10.1002/mbo3.807
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- Publication type:
- Article
Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63987-5
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- Publication type:
- Article
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61158-0
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- Publication type:
- Article
Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept.
- Published in:
- Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02897
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- Publication type:
- Article
MLVA as a Tool for Public Health Surveillance of Human <i>Salmonella</i> Typhimurium: Prospective Study in Belgium and Evaluation of MLVA Loci Stability.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0084055
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- Publication type:
- Article
A novel genotoxin-specific qPCR array based on the metabolically competent human HepaRG<sup>™</sup> cell line as a rapid and reliable tool for improved in vitro hazard assessment.
- Published in:
- Archives of Toxicology, 2018, v. 92, n. 4, p. 1593, doi. 10.1007/s00204-018-2172-5
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- Publication type:
- Article
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities.
- Published in:
- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03672-8
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- Publication type:
- Article
Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin.
- Published in:
- Microorganisms, 2023, v. 11, n. 8, p. 1954, doi. 10.3390/microorganisms11081954
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- Publication type:
- Article
Development of a Droplet Digital PCR to Monitor SARS-CoV-2 Omicron Variant BA.2 in Wastewater Samples.
- Published in:
- Microorganisms, 2023, v. 11, n. 3, p. 729, doi. 10.3390/microorganisms11030729
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- Publication type:
- Article
Non-Invasive versus Invasive Samples for Zika Virus Surveillance: A Comparative Study in New Caledonia and French Guiana in 2015–2016.
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- Microorganisms, 2021, v. 9, n. 6, p. 1312, doi. 10.3390/microorganisms9061312
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- Publication type:
- Article
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.
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- Microorganisms, 2021, v. 9, n. 4, p. 767, doi. 10.3390/microorganisms9040767
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- Publication type:
- Article
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
- Published in:
- Microorganisms, 2020, v. 8, n. 8, p. 1191, doi. 10.3390/microorganisms8081191
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- Publication type:
- Article
Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.752883
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- Publication type:
- Article
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.738284
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- Publication type:
- Article
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.750278
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- Publication type:
- Article
Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing.
- Published in:
- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.747458
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- Publication type:
- Article
Development of a multiplex mass spectrometry method for simultaneous quantification of urinary proteins related to respiratory health.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89068-9
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- Publication type:
- Article
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-71207-3
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- Publication type:
- Article
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.
- Published in:
- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00362
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- Publication type:
- Article
How to Deal with the Upcoming Challenges in GMO Detection in Food and Feed.
- Published in:
- 2012
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- Publication type:
- Journal Article
How to Deal with the Upcoming Challenges in GMO Detection in Food and Feed.
- Published in:
- Journal of Biomedicine & Biotechnology, 2012, v. 2012, p. 1, doi. 10.1155/2012/402418
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- Publication type:
- Article
Selection of a Noninvasive Source of Human DNA Envisaging Genotyping Assays in Epidemiological Studies: Urine or Saliva?
- Published in:
- Journal of Biomolecular Techniques, 2020, v. 31, n. 1, p. 27, doi. 10.7171/jbt.20-3101-004
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- Publication type:
- Article
Comparative Study of Seven Commercial Kits for Human DNA Extraction from Urine Samples Suitable for DNA Biomarker-Based Public Health Studies.
- Published in:
- Journal of Biomolecular Techniques, 2014, v. 25, n. 4, p. 96, doi. 10.7171/jbt.14-2504-002
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- Publication type:
- Article
Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products.
- Published in:
- Life (2075-1729), 2022, v. 12, n. 12, p. 1971, doi. 10.3390/life12121971
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- Publication type:
- Article
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.
- Published in:
- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1336532
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- Publication type:
- Article
Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
- Published in:
- Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1330814
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- Publication type:
- Article
Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices.
- Published in:
- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1204630
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- Publication type:
- Article
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B<sub>2</sub> products sold on the Belgian market using whole-genome sequencing.
- Published in:
- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1173594
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- Publication type:
- Article
A systematic review and meta-analysis of host genetic factors associated with influenza severity.
- Published in:
- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08240-7
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- Publication type:
- Article