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Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 7, p. 1, doi. 10.1093/g3journal/jkae091
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- Article
The evolution of the gliotoxin biosynthetic gene cluster in Penicillium fungi.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 5, p. 1, doi. 10.1093/g3journal/jkae063
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- Article
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon.
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- Molecular Biology & Evolution, 2024, v. 41, n. 4, p. 1, doi. 10.1093/molbev/msae045
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- Article
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher.
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- Current Protocols, 2024, v. 4, n. 1, p. 1, doi. 10.1002/cpz1.969
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- Article
Mitochondrial genome diversity across the subphylum Saccharomycotina.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1268944
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- Article
Know the enemy and know yourself: Addressing cryptic fungal pathogens of humans and beyond.
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- PLoS Pathogens, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.ppat.1011704
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- Article
A comprehensive map of hotspots of de novo telomere addition in Saccharomyces cerevisiae.
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- Genetics, 2023, v. 224, n. 2, p. 1, doi. 10.1093/genetics/iyad076
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- Article
Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts.
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- Molecular Biology & Evolution, 2023, v. 40, n. 6, p. 1, doi. 10.1093/molbev/msad111
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- Article
How has horizontal gene transfer shaped the evolution of insect genomes?
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- Environmental Microbiology, 2023, v. 25, n. 3, p. 642, doi. 10.1111/1462-2920.16311
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- Article
The dawn of relaxed phylogenetics.
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- PLoS Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1371/journal.pbio.3001998
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- Article
Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 1, p. 1, doi. 10.1093/g3journal/jkac285
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- Article
Mosaic patterns of selection in genomic regions associated with diverse human traits.
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- PLoS Genetics, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pgen.1010494
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- Article
OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees.
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- PLoS Biology, 2022, v. 20, n. 10, p. 1, doi. 10.1371/journal.pbio.3001827
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- Article
Dense phenotyping from electronic health records enables machine learning-based prediction of preterm birth.
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- BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02522-x
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- Article
BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data.
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- Genetics, 2022, v. 221, n. 3, p. 1, doi. 10.1093/genetics/iyac079
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- Article
Regulation of gliotoxin biosynthesis and protection in Aspergillus species.
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- PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009965
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- Article
Heterogeneity in the transcriptional response of the human pathogen Aspergillus fumigatus to the antifungal agent caspofungin.
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- Genetics, 2022, v. 220, n. 1, p. 1, doi. 10.1093/genetics/iyab183
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- Article
Examination of Gene Loss in the DNA Mismatch Repair Pathway and Its Mutational Consequences in a Fungal Phylum.
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- Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab219
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- Article
Rooting the Animal Tree of Life.
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- Molecular Biology & Evolution, 2021, v. 38, n. 10, p. 4322, doi. 10.1093/molbev/msab170
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- Article
Correction: Variation and selection on codon usage bias across an entire subphylum.
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- 2021
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- Correction Notice
Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data.
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- Systematic Biology, 2021, v. 70, n. 5, p. 997, doi. 10.1093/sysbio/syab011
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- Article
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2325, doi. 10.1093/bioinformatics/btab096
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- Article
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.
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- PLoS Biology, 2021, v. 19, n. 8, p. 1, doi. 10.1371/journal.pbio.3001365
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- Article
An evolutionary genomic approach reveals both conserved and species-specific genetic elements related to human disease in closely related Aspergillus fungi.
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- Genetics, 2021, v. 218, n. 2, p. 1, doi. 10.1093/genetics/iyab066
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- Article
Signatures of optimal codon usage in metabolic genes inform budding yeast ecology.
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- PLoS Biology, 2021, v. 19, n. 4, p. 1, doi. 10.1371/journal.pbio.3001185
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- Article
Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo's law of irreversible loss.
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- Genetics, 2021, v. 217, n. 2, p. 1, doi. 10.1093/genetics/iyaa012
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Developing a theoretical evolutionary framework to solve the mystery of parturition initiation.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.58343
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ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference.
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- PLoS Biology, 2020, v. 18, n. 12, p. 1, doi. 10.1371/journal.pbio.3001007
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- Article
An investigation of irreproducibility in maximum likelihood phylogenetic inference.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-20005-6
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- Article
Variation Among Biosynthetic Gene Clusters, Secondary Metabolite Profiles, and Cards of Virulence Across Aspergillus Species.
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- Genetics, 2020, v. 216, n. 2, p. 481, doi. 10.1534/genetics.120.303549
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- Article
Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17258-6
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- Article
Recurrent Loss of abaA, a Master Regulator of Asexual Development in Filamentous Fungi, Correlates with Changes in Genomic and Morphological Traits.
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- Genome Biology & Evolution, 2020, v. 12, n. 7, p. 1119, doi. 10.1093/gbe/evaa107
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- Article
Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus , Aspergillus lentulus , and Aspergillus fumigatiaffinis.
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- Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00459
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- Article
Quartet-Based Computations of Internode Certainty Provide Robust Measures of Phylogenetic Incongruence.
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- Systematic Biology, 2020, v. 69, n. 2, p. 308, doi. 10.1093/sysbio/syz058
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- Article
Evolving moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity.
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- PLoS Pathogens, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.ppat.1008315
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- Article
Genomic features and evolution of the conditionally dispensable chromosome in the tangerine pathotype of Alternaria alternata.
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- Molecular Plant Pathology, 2019, v. 20, n. 10, p. 1425, doi. 10.1111/mpp.12848
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- Article
Immune Regulation in Eutherian Pregnancy: Live Birth Coevolved with Novel Immune Genes and Gene Regulation.
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- BioEssays, 2019, v. 41, n. 9, p. N.PAG, doi. 10.1002/bies.201900072
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- Article
The Impact of Natural Selection on the Evolution and Function of Placentally Expressed Galectins.
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- Genome Biology & Evolution, 2019, v. 11, n. 9, p. 2574, doi. 10.1093/gbe/evz183
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- Article
Treehouse: a user-friendly application to obtain subtrees from large phylogenies.
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- BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4577-5
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- Article
Signatures of Recent Positive Selection in Enhancers Across 41 Human Tissues.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 8, p. 2761, doi. 10.1534/g3.119.400186
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- Article
Variation and selection on codon usage bias across an entire subphylum.
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- PLoS Genetics, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pgen.1008304
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- Publication type:
- Article
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.
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- PLoS Biology, 2019, v. 17, n. 5, p. 1, doi. 10.1371/journal.pbio.3000255
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- Article
Nutritional Heterogeneity Among Aspergillus fumigatus Strains Has Consequences for Virulence in a Strain- and Host-Dependent Manner.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00854
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- Article
Gene Selection and Evolutionary Modeling Affect Phylogenomic Inference of Neuropterida Based on Transcriptome Data.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 5, p. 1072, doi. 10.3390/ijms20051072
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- Article
Mapping the Fungal Battlefield: Using in situ Chemistry and Deletion Mutants to Monitor Interspecific Chemical Interactions Between Fungi.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00285
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- Article
Genome-wide association analysis uncovers variants for reproductive variation across dog breeds and links to domestication.
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- Evolution, Medicine & Public Health, 2019, v. 2019, n. 1, p. 93, doi. 10.1093/emph/eoz015
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- Article
integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth.
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- BMC Medical Genomics, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s12920-018-0426-y
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- Article
Structural Biology of the HEAT‐Like Repeat Family of DNA Glycosylases.
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- BioEssays, 2018, v. 40, n. 11, p. N.PAG, doi. 10.1002/bies.201800133
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- Article
Correction: Whole exome sequencing reveals HSPA1L as a genetic risk factor for spontaneous preterm birth.
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- 2018
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- Correction Notice
Whole exome sequencing reveals HSPA1L as a genetic risk factor for spontaneous preterm birth.
- Published in:
- PLoS Genetics, 2018, v. 14, n. 7, p. 1, doi. 10.1371/journal.pgen.1007394
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- Article