Works by Roeder, Ingo

Results: 56

Data integration between clinical research and patient care: A framework for context-depending data sharing and in silico predictions.

Published in:

PLoS Digital Health, 2023, v. 1, n. 5, p. 1, doi. 10.1371/journal.pdig.0000140

By:

Hoffmann, Katja;
Pelz, Anne;
Karg, Elena;
Gottschalk, Andrea;
Zerjatke, Thomas;
Schuster, Silvio;
Böhme, Heiko;
Glauche, Ingmar;
Roeder, Ingo

Publication type:

Article

Cellular aging leads to functional heterogeneity of hematopoietic stem cells: a modeling perspective.

Published in:

Aging Cell, 2011, v. 10, n. 3, p. 457, doi. 10.1111/j.1474-9726.2011.00692.x

By:

Glauche, Ingmar;
Thielecke, Lars;
Roeder, Ingo

Publication type:

Article

Comparative Gene Expression Analysis Reveals Similarities and Differences of Chronic Myeloid Leukemia Phases.

Published in:

Cancers, 2022, v. 14, n. 1, p. 256, doi. 10.3390/cancers14010256

By:

Schwarz, Annemarie;
Roeder, Ingo;
Seifert, Michael

Publication type:

Article

Identifying Genetic Lesions in Ocular Adnexal Extranodal Marginal Zone Lymphomas of the MALT Subtype by Whole Genome, Whole Exome and Targeted Sequencing.

Published in:

Cancers, 2020, v. 12, n. 4, p. 986, doi. 10.3390/cancers12040986

By:

Johansson, Patricia;
Klein-Hitpass, Ludger;
Budeus, Bettina;
Kuhn, Matthias;
Lauber, Chris;
Seifert, Michael;
Roeder, Ingo;
Pförtner, Roman;
Stuschke, Martin;
Dührsen, Ulrich;
Eckstein, Anja;
Dürig, Jan;
Küppers, Ralf

Publication type:

Article

MAGPIE: Simplifying access and execution of computational models in the life sciences.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005898

By:

Baldow, Christoph;
Salentin, Sebastian;
Schroeder, Michael;
Roeder, Ingo;
Glauche, Ingmar

Publication type:

Article

Finding small somatic structural variants in exome sequencing data: a machine learning approach.

Published in:

Computational Statistics, 2018, v. 33, n. 3, p. 1145, doi. 10.1007/s00180-016-0674-2

By:

Kuhn, Matthias;
Stange, Thoralf;
Herold, Sylvia;
Thiede, Christian;
Roeder, Ingo

Publication type:

Article

Survival differences and associated molecular signatures of DNMT3A-mutant acute myeloid leukemia patients.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-69691-8

By:

Lauber, Chris;
Correia, Nádia;
Trumpp, Andreas;
Rieger, Michael A.;
Dolnik, Anna;
Bullinger, Lars;
Roeder, Ingo;
Seifert, Michael

Publication type:

Article

Domain-specific cues improve robustness of deep learning-based segmentation of CT volumes.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67544-y

By:

Kloenne, Marie;
Niehaus, Sebastian;
Lampe, Leonie;
Merola, Alberto;
Reinelt, Janis;
Roeder, Ingo;
Scherf, Nico

Publication type:

Article

Concepts in mature T-cell lymphomas – highlights from an international joint symposium on T-cell immunology and oncology.

Published in:

Leukemia & Lymphoma, 2017, v. 58, n. 4, p. 788, doi. 10.1080/10428194.2016.1222381

By:

Herling, Marco;
Rengstl, Benjamin;
Scholtysik, René;
Hartmann, Sylvia;
Küppers, Ralf;
Hansmann, Martin-Leo;
Diebner, Hans H.;
Roeder, Ingo;
Abken, Hinrich;
Newrzela, Sebastian;
Kirberg, Jörg

Publication type:

Article

Merging concepts - coupling an agent-based model of hematopoietic stem cells with an ODE model of granulopoiesis.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-117

By:

Krinner, Axel;
Roeder, Ingo;
Loeffler, Markus;
Scholz, Markus

Publication type:

Article

Stem Cell Proliferation and Quiescence-Two Sides of the Same Coin.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000447

By:

Glauche, Ingmar;
Moore, Kateri;
Thielecke, Lars;
Horn, Katrin;
Loeffler, Markus;
Roeder, Ingo

Publication type:

Article

Functional improvement in children and adolescents with primary headache after an interdisciplinary multimodal therapy program: the DreKiP study.

Published in:

Journal of Headache & Pain, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s10194-022-01481-1

By:

Sobe, Hanna;
Richter, Matthias;
Berner, Reinhard;
von der Hagen, Maja;
Hähner, Antje;
Röder, Ingo;
Koch, Thea;
Sabatowski, Rainer;
Klimova, Anna;
Gossrau, Gudrun

Publication type:

Article

An "Age"-Structured Model of Hematopoietic Stem Cell Organization with Application to Chronic Myeloid Leukemia.

Published in:

Bulletin of Mathematical Biology, 2009, v. 71, n. 3, p. 602, doi. 10.1007/s11538-008-9373-7

By:

Roeder, Ingo;
Herberg, Maria;
Horn, Matthias

Publication type:

Article

No Evidence of Clonal Dominance in Primates up to 4 Years Following Transplantation of Multidrug Resistance 1 Retrovirally Transduced Long-Term Repopulating Cells.

Published in:

Stem Cells, 2007, v. 25, n. 10, p. 2610, doi. 10.1634/stemcells.2007-0017

By:

Bozorgmehr, Farastuk;
Laufs, Stefanie;
Sellers, Stephanie E.;
Roeder, Ingo;
Werner J.Zeller;
Dunbar, Cynthia E.;
Fruehauf, Stefan

Publication type:

Article

Lineage Specification of Hematopoietic Stem Cells: Mathematical Modeling and Biological Implications.

Published in:

Stem Cells, 2007, v. 25, n. 7, p. 1791, doi. 10.1634/stemcells.2007-0025

By:

Glauche, Ingmar;
Cross, Michael;
Loeffler, Markus;
Roeder, Ingo

Publication type:

Article

Stratifying esophago-gastric cancer treatment using a patient-derived organoid-based threshold.

Published in:

Molecular Cancer, 2024, v. 23, n. 1, p. 1, doi. 10.1186/s12943-023-01919-3

By:

Schmäche, Tim;
Fohgrub, Juliane;
Klimova, Anna;
Laaber, Karin;
Drukewitz, Stephan;
Merboth, Felix;
Hennig, Alexander;
Seidlitz, Therese;
Herbst, Friederike;
Baenke, Franziska;
Ada, Anne-Marlen;
Groß, Thomas;
Wenzel, Carina;
Ball, Claudia R.;
Praetorius, Christian;
Schmidt, Thomas;
Ringelband-Schilling, Barbara;
Koschny, Ronald;
Stenzinger, Albrecht;
Roeder, Ingo

Publication type:

Article

Stratifying esophago-gastric cancer treatment using a patient-derived organoid-based threshold.

Published in:

Molecular Cancer, 2024, v. 23, n. 1, p. 1, doi. 10.1186/s12943-023-01919-3

By:

Schmäche, Tim;
Fohgrub, Juliane;
Klimova, Anna;
Laaber, Karin;
Drukewitz, Stephan;
Merboth, Felix;
Hennig, Alexander;
Seidlitz, Therese;
Herbst, Friederike;
Baenke, Franziska;
Ada, Anne-Marlen;
Groß, Thomas;
Wenzel, Carina;
Ball, Claudia R.;
Praetorius, Christian;
Schmidt, Thomas;
Ringelband-Schilling, Barbara;
Koschny, Ronald;
Stenzinger, Albrecht;
Roeder, Ingo

Publication type:

Article

Stem Cell Fate Analysis Revisited: Interpretation of Individual Clone Dynamics in the Light of a New Paradigm of Stem Cell Organization.

Published in:

Journal of Biomedicine & Biotechnology, 2007, p. 1, doi. 10.1155/2007/84656

By:

Roeder, Ingo;
Braesel, Katrin;
Lorenz, Ronny;
Loeffler, Markus

Publication type:

Article

Pathogenesis, treatment effects, and resistance dynamics in chronic myeloid leukemia - insights from mathematical model analyses.

Published in:

Journal of Molecular Medicine, 2008, v. 86, n. 1, p. 17, doi. 10.1007/s00109-007-0241-y

By:

Roeder, Ingo;
Glauche, Ingmar

Publication type:

Article

To Cure or Not to Cure: Consequences of Immunological Interactions in CML Treatment.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 7, p. 2345, doi. 10.1007/s11538-019-00608-x

By:

César Fassoni, Artur;
Roeder, Ingo;
Glauche, Ingmar

Publication type:

Article

Process-based approach to modeling recurrent-event data explicated on the basis of occurrences of tooth losses in two different prosthetic treatment concepts.

Published in:

2016

By:

Diebner, Hans H.;
Marré, Birgit;
Roeder, Ingo;
Walter, Michael H.

Publication type:

journal article

Dynamic modeling of imatinib-treated chronic myeloid leukemia: functional insights and clinical implications.

Published in:

2006

By:

Roeder, Ingo;
Horn, Matthias;
Glauche, Ingmar;
Hochhaus, Andreas;
Mueller, Martin C.;
Loeffler, Markus

Publication type:

Letter

Mice in an enriched environment learn more flexibly because of adult hippocampal neurogenesis.

Published in:

Hippocampus, 2016, v. 26, n. 2, p. 261, doi. 10.1002/hipo.22520

By:

Garthe, Alexander;
Roeder, Ingo;
Kempermann, Gerd

Publication type:

Article

Mathematical Modeling of Genesis and Treatment of Chronic Myeloid Leukemia.

Published in:

Cells Tissues Organs, 2008, v. 188, n. 1/2, p. 236, doi. 10.1159/000118786

By:

Horn, Matthias;
Loeffler, Markus;
Roeder, Ingo

Publication type:

Article

Tissue Stem Cells: Definition, Plasticity, Heterogeneity, Self-Organization and Models – A Conceptual Approach.

Published in:

Cells Tissues Organs, 2002, v. 171, n. 1, p. 8, doi. 10.1159/000057688

By:

Loeffler, Markus;
Roeder, Ingo

Publication type:

Article

Micro Array Based Gene Expression Analysis using Parametric Multivariate Tests per Gene – A Generalized Application of Multiple Procedures with Data-driven Order of Hypotheses.

Published in:

Biometrical Journal, 2004, v. 46, n. 6, p. 687

By:

Siegfried Kropf;
Ingo Roeder

Publication type:

Article

P2.65: Multivariate, parametric testing of differential gene expression for Affymetrix GeneChip Data.

Published in:

Biometrical Journal, 2004, v. 46, p. 153, doi. 10.1002/bimj.200490215

By:

Schuster, Ernst;
Röder, Ingo

Publication type:

Article

Online Calculation of Efficient Designs for Multi-Factor Models.

Published in:

Biometrical Journal, 2000, v. 42, n. 3, p. 349, doi. 10.1002/1521-4036(200007)42:3<349::AID-BIMJ349>3.0.CO;2-N

By:

Dette, Holger;
Roeder, Ingo

Publication type:

Article

Automated detection of the HER2 gene amplification status in Fluorescence in situ hybridization images for the diagnostics of cancer tissues.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-44643-z

By:

Zakrzewski, Falk;
de Back, Walter;
Weigert, Martin;
Wenke, Torsten;
Zeugner, Silke;
Mantey, Robert;
Sperling, Christian;
Friedrich, Katrin;
Roeder, Ingo;
Aust, Daniela;
Baretton, Gustavo;
Hönscheid, Pia

Publication type:

Article

Mathematical modeling of oncogenesis control in mature T-cell populations.

Published in:

Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00380

By:

Gerdes, Sebastian;
Newrzela, Sebastian;
Glauche, Ingmar;
Laer, Dorothee von;
Hansmann, Martin-Leo;
Roeder, Ingo

Publication type:

Article

Heparin modification of a biomimetic bone matrix for controlled release of VEGF.

Published in:

Journal of Biomedical Materials Research, Part A, 2014, v. 102, n. 10, p. 3500, doi. 10.1002/jbm.a.35020

By:

Knaack, Sven;
Lode, Anja;
Hoyer, Birgit;
Rösen‐Wolff, Angela;
Gabrielyan, Anastasia;
Roeder, Ingo;
Gelinsky, Michael

Publication type:

Article

The prevalence of headache in German pupils of different ages and school types.

Published in:

2019

By:

Nieswand, Vera;
Richter, Matthias;
Berner, Reinhard;
von der Hagen, Maja;
Klimova, Anna;
Roeder, Ingo;
Koch, Thea;
Sabatowski, Rainer;
Gossrau, Gudrun

Publication type:

journal article

Computational gene expression analysis reveals distinct molecular subgroups of T-cell prolymphocytic leukemia.

Published in:

PLoS ONE, 2022, v. 17, n. 9, p. 1, doi. 10.1371/journal.pone.0274463

By:

Mikhaylenko, Nathan;
Wahnschaffe, Linus;
Herling, Marco;
Roeder, Ingo;
Seifert, Michael

Publication type:

Article

Urinary MicroRNAs as Potential Markers for Non-Invasive Diagnosis of Bladder Cancer.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 11, p. 3814, doi. 10.3390/ijms21113814

By:

Erdmann, Kati;
Salomo, Karsten;
Klimova, Anna;
Heberling, Ulrike;
Lohse-Fischer, Andrea;
Fuehrer, Romy;
Thomas, Christian;
Roeder, Ingo;
Froehner, Michael;
Wirth, Manfred P.;
Fuessel, Susanne

Publication type:

Article

Integration of mathematical model predictions into routine workflows to support clinical decision making in haematology.

Published in:

2020

By:

Hoffmann, Katja;
Cazemier, Katja;
Baldow, Christoph;
Schuster, Silvio;
Kheifetz, Yuri;
Schirm, Sibylle;
Horn, Matthias;
Ernst, Thomas;
Volgmann, Constanze;
Thiede, Christian;
Hochhaus, Andreas;
Bornhäuser, Martin;
Suttorp, Meinolf;
Scholz, Markus;
Glauche, Ingmar;
Loeffler, Markus;
Roeder, Ingo

Publication type:

journal article

Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions.

Published in:

Bioinformatics, 2015, v. 31, n. 11, p. 1816, doi. 10.1093/bioinformatics/btv040

By:

Niederberger, Theresa;
Failmezger, Henrik;
Uskat, Diana;
Poron, Don;
Glauche, Ingmar;
Scherf, Nico;
Roeder, Ingo;
Schroeder, Timm;
Tresch, Achim

Publication type:

Article

Quantitative prediction of long-term molecular response in TKI-treated CML – Lessons from an imatinib versus dasatinib comparison.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29923-4

By:

Glauche, Ingmar;
Kuhn, Matthias;
Baldow, Christoph;
Schulze, Philipp;
Rothe, Tino;
Liebscher, Hendrik;
Roy, Amit;
Wang, Xiaoning;
Roeder, Ingo

Publication type:

Article

Neurotrophin Receptor p75NTR Regulates Immune Function of Plasmacytoid Dendritic Cells.

Published in:

Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00981

By:

Bandoła, Joanna;
Richter, Cornelia;
Ryser, Martin;
Jamal, Arshad;
Ashton, Michelle P.;
von Bonin, Malte;
Kuhn, Matthias;
Dorschner, Benjamin;
Alexopoulou, Dimitra;
Navratiel, Katrin;
Roeder, Ingo;
Dahl, Andreas;
Hedrich, Christian M.;
Bonifaci, Ezio;
Brenner, Sebastian;
Thieme, Sebastian

Publication type:

Article

Multiplexing clonality: combining RGB marking and genetic barcoding.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e56, doi. 10.1093/nar/gku081

By:

Cornils, Kerstin;
Thielecke, Lars;
Hüser, Svenja;
Forgber, Michael;
Thomaschewski, Michael;
Kleist, Nadja;
Hussein, Kais;
Riecken, Kristoffer;
Volz, Tassilo;
Gerdes, Sebastian;
Glauche, Ingmar;
Dahl, Andreas;
Dandri, Maura;
Roeder, Ingo;
Fehse, Boris

Publication type:

Article

High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics.

Published in:

Nature Communications, 2013, v. 4, n. 7, p. 2207, doi. 10.1038/ncomms3207

By:

Schmid, Benjamin;
Shah, Gopi;
Scherf, Nico;
Weber, Michael;
Thierbach, Konstantin;
Campos, Citlali Pérez;
Roeder, Ingo;
Aanstad, Pia;
Huisken, Jan

Publication type:

Article

How to predict relapse in leukemia using time series data: A comparative in silico study.

Published in:

PLoS ONE, 2021, v. 16, n. 11, p. 1, doi. 10.1371/journal.pone.0256585

By:

Hoffmann, Helene;
Baldow, Christoph;
Zerjatke, Thomas;
Gottschalk, Andrea;
Wagner, Sebastian;
Karg, Elena;
Niehaus, Sebastian;
Roeder, Ingo;
Glauche, Ingmar;
Scherf, Nico

Publication type:

Article

In Vitro, Clinical, and Microbiological Evaluation of a Linear Oscillating Device for Scaling and Root Planing.

Published in:

Journal of Periodontology, 2005, v. 76, n. 11, p. 1942, doi. 10.1902/jop.2005.76.11.1942

By:

Rupf, Stefan;
Brader, Iris;
Vonderlind, Doris;
Kannengiesser, Sabine;
Eschrich, Klaus;
Roeder, Ingo;
Merte, Knut

Publication type:

Article

linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009503

By:

Waschke, Johannes;
Hlawitschka, Mario;
Anlas, Kerim;
Trivedi, Vikas;
Roeder, Ingo;
Huisken, Jan;
Scherf, Nico

Publication type:

Article

Limitations and challenges of genetic barcode quantification.

Published in:

Scientific Reports, 2017, p. 43249, doi. 10.1038/srep43249

By:

Thielecke, Lars;
Aranyossy, Tim;
Dahl, Andreas;
Tiwari, Rajiv;
Roeder, Ingo;
Geiger, Hartmut;
Fehse, Boris;
Glauche, Ingmar;
Cornils, Kerstin

Publication type:

Article

Proline-rich protein PRR19 functions with cyclin-like CNTD1 to promote meiotic crossing over in mouse.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16885-3

By:

Bondarieva, Anastasiia;
Raveendran, Kavya;
Telychko, Vladyslav;
Rao, H. B. D. Prasada;
Ravindranathan, Ramya;
Zorzompokou, Chrysoula;
Finsterbusch, Friederike;
Dereli, Ihsan;
Papanikos, Frantzeskos;
Tränkner, Daniel;
Schleiffer, Alexander;
Fei, Ji-Feng;
Klimova, Anna;
Ito, Masaru;
Kulkarni, Dhananjaya S.;
Roeder, Ingo;
Hunter, Neil;
Tóth, Attila

Publication type:

Article

Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13625-0

By:

Shah, Gopi;
Thierbach, Konstantin;
Schmid, Benjamin;
Waschke, Johannes;
Reade, Anna;
Hlawitschka, Mario;
Roeder, Ingo;
Scherf, Nico;
Huisken, Jan

Publication type:

Article

A Model-Based Analysis of Culture-Dependent Phenotypes of mESCs.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092496

By:

Herberg, Maria;
Kalkan, Tüzer;
Glauche, Ingmar;
Smith, Austin;
Roeder, Ingo

Publication type:

Article

Nanog Variability and Pluripotency Regulation of Embryonic Stem Cells - Insights from a Mathematical Model Analysis.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011238

By:

Glauche, Ingmar;
Herberg, Maria;
Roeder, Ingo

Publication type:

Article

Clonal competition in BcrAbl-driven leukemia: how transplantations can accelerate clonal conversion.

Published in:

Molecular Cancer, 2017, v. 16, p. 1, doi. 10.1186/s12943-017-0668-x

By:

Cornils, Kerstin;
Thielecke, Lars;
Winkelmann, Doreen;
Aranyossy, Tim;
Lesche, Mathias;
Dahl, Andreas;
Roeder, Ingo;
Fehse, Boris;
Glauche, Ingmar

Publication type:

Article

RNAi-Mediated Screen of Primary AML Cells Nominates MDM4 as a Therapeutic Target in NK-AML with DNMT3A Mutations.

Published in:

Cells (2073-4409), 2022, v. 11, n. 5, p. 854, doi. 10.3390/cells11050854

By:

Sidorova, Olga Alexandra;
Sayed, Shady;
Paszkowski-Rogacz, Maciej;
Seifert, Michael;
Camgöz, Aylin;
Roeder, Ingo;
Bornhäuser, Martin;
Thiede, Christian;
Buchholz, Frank

Publication type:

Article